Wall clock time and date at job start Mon Mar 30 2020 02:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00019 * 2 1 4 4 H 1.48495 * 109.47393 * 269.99835 * 3 2 1 5 5 H 1.48499 * 109.46877 * 30.00154 * 3 2 1 6 6 H 1.48500 * 109.47241 * 149.99757 * 3 2 1 7 7 C 1.37882 * 120.00185 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00036 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99589 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47052 * 180.02562 * 9 7 2 11 11 N 1.46895 * 109.47194 * 179.97438 * 10 9 7 12 12 C 1.46900 * 111.00027 * 180.02562 * 11 10 9 13 13 H 1.08998 * 109.52259 * 324.87392 * 12 11 10 14 14 C 1.53093 * 109.52234 * 84.99817 * 12 11 10 15 15 O 1.42904 * 109.42351 * 177.50843 * 14 12 11 16 16 C 1.42902 * 114.09961 * 298.86177 * 15 14 12 17 17 C 1.53094 * 109.42545 * 61.14161 * 16 15 14 18 18 C 1.53176 * 109.52365 * 204.68469 * 12 11 10 19 19 H 1.09002 * 109.54544 * 302.98189 * 18 12 11 20 20 O 1.42902 * 109.54230 * 63.24551 * 18 12 11 21 21 H 0.96999 * 119.99914 * 0.02562 * 1 2 3 22 22 H 1.08996 * 109.47107 * 59.99813 * 9 7 2 23 23 H 1.09007 * 109.46873 * 300.00040 * 9 7 2 24 24 H 1.09005 * 109.46837 * 59.99981 * 10 9 7 25 25 H 1.08997 * 109.46961 * 300.00220 * 10 9 7 26 26 H 1.00906 * 110.99985 * 303.95006 * 11 10 9 27 27 H 1.09002 * 109.48198 * 297.49951 * 14 12 11 28 28 H 1.08999 * 109.48029 * 57.52565 * 14 12 11 29 29 H 1.09000 * 109.47314 * 301.15801 * 16 15 14 30 30 H 1.09001 * 109.49082 * 181.13246 * 16 15 14 31 31 H 1.08997 * 109.52488 * 182.49772 * 17 16 15 32 32 H 1.08995 * 109.52127 * 62.29758 * 17 16 15 33 33 H 0.96698 * 113.99849 * 179.97438 * 20 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 7 1.5107 -4.9343 -0.0020 12 6 2.4352 -6.0759 -0.0011 13 1 3.3179 -5.8303 -0.5915 14 6 2.8537 -6.3942 1.4367 15 8 3.7067 -7.5407 1.4405 16 6 3.0930 -8.7264 0.9310 17 6 2.6841 -8.5018 -0.5271 18 6 1.7384 -7.2993 -0.6045 19 1 0.8286 -7.5142 -0.0439 20 8 1.4095 -7.0369 -1.9702 21 1 -0.4850 0.8400 -0.0004 22 1 0.6247 -2.5563 -0.8919 23 1 0.6239 -2.5574 0.8881 24 1 2.8712 -3.6048 0.8891 25 1 2.8725 -3.6040 -0.8909 26 1 0.8739 -4.9845 0.7792 27 1 3.3880 -5.5421 1.8569 28 1 1.9669 -6.5990 2.0365 29 1 2.2094 -8.9618 1.5241 30 1 3.7996 -9.5545 0.9869 31 1 2.1761 -9.3895 -0.9039 32 1 3.5720 -8.3062 -1.1284 33 1 0.9651 -7.7711 -2.4158 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710911393.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:49 Heat of formation + Delta-G solvation = -134.176146 kcal Electronic energy + Delta-G solvation = -14693.249474 eV Core-core repulsion = 12138.254999 eV Total energy + Delta-G solvation = -2554.994475 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.77544 -37.64072 -37.12019 -35.05209 -32.74283 -32.08432 -29.26755 -26.12664 -25.45319 -23.76291 -22.58146 -21.27801 -18.55526 -18.41004 -17.37955 -17.17161 -16.54851 -16.30059 -15.94759 -15.46714 -15.01745 -14.50115 -14.26665 -14.02973 -13.76669 -13.31983 -13.11410 -12.85601 -12.52501 -12.40192 -12.13711 -11.90279 -11.74823 -11.37961 -11.17759 -10.88166 -10.73440 -10.56664 -9.23460 -8.21037 -6.32797 1.40129 1.42135 1.53056 2.40043 2.74829 3.12363 3.21098 3.30194 3.75423 3.85712 3.97072 4.08732 4.16586 4.42243 4.50908 4.54005 4.59855 4.68891 4.76884 4.81182 4.99513 5.03301 5.19386 5.42387 5.64569 5.75298 6.00293 6.16815 6.26121 6.49914 6.83909 7.01176 7.36487 8.91276 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.054141 B = 0.005717 C = 0.005417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 517.046665 B = 4896.102429 C = 5168.113054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.002 3.998 3 Si 0.968 3.032 4 H -0.273 1.273 5 H -0.279 1.279 6 H -0.263 1.263 7 C -0.547 4.547 8 H 0.059 0.941 9 C 0.033 3.967 10 C 0.086 3.914 11 N -0.678 5.678 12 C 0.058 3.942 13 H 0.066 0.934 14 C 0.043 3.957 15 O -0.398 6.398 16 C 0.055 3.945 17 C -0.179 4.179 18 C 0.116 3.884 19 H 0.064 0.936 20 O -0.573 6.573 21 H 0.264 0.736 22 H -0.009 1.009 23 H -0.004 1.004 24 H 0.024 0.976 25 H 0.049 0.951 26 H 0.340 0.660 27 H 0.089 0.911 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.118 0.882 31 H 0.108 0.892 32 H 0.067 0.933 33 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.372 -18.543 1.703 19.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.792 3.208 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.187 1.187 7 C -0.585 4.585 8 H 0.077 0.923 9 C -0.004 4.004 10 C -0.043 4.043 11 N -0.310 5.310 12 C -0.053 4.053 13 H 0.084 0.916 14 C -0.035 4.035 15 O -0.316 6.316 16 C -0.021 4.021 17 C -0.217 4.217 18 C 0.057 3.943 19 H 0.082 0.918 20 O -0.380 6.380 21 H 0.073 0.927 22 H 0.010 0.990 23 H 0.014 0.986 24 H 0.042 0.958 25 H 0.067 0.933 26 H 0.159 0.841 27 H 0.107 0.893 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.135 0.865 31 H 0.126 0.874 32 H 0.086 0.914 33 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 4.620 -17.876 1.229 18.505 hybrid contribution -0.074 0.605 0.530 0.807 sum 4.546 -17.272 1.759 17.947 Atomic orbital electron populations 1.70105 1.07836 1.27862 1.51328 1.25978 0.95780 1.03383 0.94505 0.85403 0.78634 0.78219 0.78507 1.19835 1.20476 1.18703 1.21605 0.93506 0.92279 1.51123 0.92254 1.18905 0.94237 0.92180 0.95098 1.21800 0.95629 0.88351 0.98500 1.60495 1.19434 1.01196 1.49835 1.22282 0.95329 0.91452 0.96203 0.91553 1.23297 0.95462 0.89168 0.95606 1.87920 1.40588 1.18748 1.84344 1.22830 0.99560 0.87275 0.92483 1.22939 1.00781 0.99194 0.98828 1.21806 0.96454 0.92686 0.83391 0.91808 1.86666 1.81534 1.45308 1.24511 0.92674 0.99032 0.98604 0.95762 0.93268 0.84148 0.89272 0.91271 0.91426 0.86452 0.87393 0.91422 0.76288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.84 13.29 21.45 0.28 -57.56 16 2 C 0.00 0.09 5.46 84.66 0.46 0.55 16 3 Si 0.97 45.08 29.54 68.60 2.03 47.10 16 4 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 5 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 6 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 7 C -0.55 -32.13 9.11 25.60 0.23 -31.90 16 8 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 9 C 0.03 1.84 5.23 29.85 0.16 1.99 16 10 C 0.09 3.82 5.42 86.31 0.47 4.28 16 11 N -0.68 -25.32 6.18 -491.11 -3.04 -28.35 16 12 C 0.06 1.77 2.34 45.01 0.11 1.88 16 13 H 0.07 2.31 7.80 -2.39 -0.02 2.29 16 14 C 0.04 1.13 6.10 72.01 0.44 1.57 16 15 O -0.40 -9.92 10.77 -148.98 -1.60 -11.52 16 16 C 0.05 0.92 6.84 72.01 0.49 1.42 16 17 C -0.18 -3.12 5.77 30.69 0.18 -2.95 16 18 C 0.12 2.82 3.20 30.71 0.10 2.92 16 19 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 20 O -0.57 -15.83 13.25 -148.98 -1.97 -17.81 16 21 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 22 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 23 H 0.00 -0.25 8.14 -2.38 -0.02 -0.27 16 24 H 0.02 1.02 7.49 -2.38 -0.02 1.01 16 25 H 0.05 2.27 8.06 -2.39 -0.02 2.25 16 26 H 0.34 11.84 8.45 -89.69 -0.76 11.08 16 27 H 0.09 2.50 7.52 -2.39 -0.02 2.48 16 28 H 0.07 1.57 8.09 -2.39 -0.02 1.55 16 29 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.12 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.11 1.20 8.14 -2.39 -0.02 1.19 16 32 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.39 6.50 9.09 -74.06 -0.67 5.83 16 Total: -1.00 -70.98 273.36 -2.00 -72.98 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: -0.33 Total: 15.38 kcal Atomic # 6 Polarization: -22.86 SS G_CDS: 2.63 Total: -20.23 kcal Atomic # 7 Polarization: -83.16 SS G_CDS: -2.75 Total: -85.91 kcal Atomic # 8 Polarization: -25.75 SS G_CDS: -3.58 Total: -29.33 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.10 kcal Total: -70.98 -2.00 -72.98 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710911393.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.192 kcal (2) G-P(sol) polarization free energy of solvation -70.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds