Wall clock time and date at job start Mon Mar 30 2020 03:24:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 H 1.09000 * 109.46797 * 2 1 4 4 C 1.50703 * 109.46817 * 240.00271 * 2 1 3 5 5 H 1.07999 * 119.99583 * 274.99649 * 4 2 1 6 6 C 1.37875 * 119.99973 * 95.00002 * 4 2 1 7 7 N 1.31514 * 120.00237 * 184.91029 * 6 4 2 8 8 Si 1.86803 * 119.99971 * 4.90980 * 6 4 2 9 9 H 1.48506 * 109.46853 * 84.83242 * 8 6 4 10 10 H 1.48503 * 109.47230 * 204.82966 * 8 6 4 11 11 H 1.48499 * 109.47579 * 324.83492 * 8 6 4 12 12 N 1.46895 * 109.46833 * 120.00441 * 2 1 3 13 13 C 1.46901 * 110.99843 * 274.99769 * 12 2 1 14 14 H 1.09000 * 109.57328 * 34.84731 * 13 12 2 15 15 C 1.53099 * 109.52208 * 274.69033 * 13 12 2 16 16 O 1.42904 * 109.41402 * 182.48352 * 15 13 12 17 17 C 1.42908 * 114.09448 * 61.15906 * 16 15 13 18 18 C 1.53085 * 109.41613 * 298.83930 * 17 16 15 19 19 C 1.53171 * 109.52287 * 155.00598 * 13 12 2 20 20 H 1.09002 * 109.54799 * 57.02039 * 19 13 12 21 21 O 1.42904 * 109.61719 * 296.79356 * 19 13 12 22 22 H 1.08996 * 109.46998 * 55.04611 * 1 2 3 23 23 H 1.09003 * 109.46719 * 175.04319 * 1 2 3 24 24 H 1.08999 * 109.46789 * 295.04018 * 1 2 3 25 25 H 0.96995 * 120.00324 * 180.02562 * 7 6 4 26 26 H 1.00897 * 110.99765 * 151.04844 * 12 2 1 27 27 H 1.08994 * 109.48174 * 62.50477 * 15 13 12 28 28 H 1.09003 * 109.49003 * 302.46988 * 15 13 12 29 29 H 1.08998 * 109.47955 * 178.85883 * 17 16 15 30 30 H 1.09002 * 109.48336 * 58.82476 * 17 16 15 31 31 H 1.09003 * 109.52515 * 297.70385 * 18 17 16 32 32 H 1.09003 * 109.57733 * 177.54852 * 18 17 16 33 33 H 0.96703 * 114.00076 * 180.22048 * 21 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.1355 -1.7854 -1.2291 6 6 2.3602 0.0122 -2.3581 7 7 2.7060 -0.6130 -3.4623 8 14 2.3134 1.8792 -2.3174 9 1 3.5990 2.3950 -1.7821 10 1 2.1057 2.3992 -3.6928 11 1 1.1985 2.3276 -1.4450 12 7 2.0197 -0.6926 1.1994 13 6 2.0825 0.2225 2.3469 14 1 1.2599 0.9354 2.2908 15 6 3.4149 0.9762 2.3278 16 8 3.4982 1.8228 3.4761 17 6 3.4527 1.1231 4.7213 18 6 2.1219 0.3753 4.8365 19 6 1.9771 -0.5796 3.6475 20 1 2.7705 -1.3263 3.6809 21 8 0.7060 -1.2297 3.7086 22 1 -0.3633 0.5887 -0.8423 23 1 -0.3633 -1.0239 -0.0888 24 1 -0.3633 0.4350 0.9311 25 1 2.9370 -0.1047 -4.2554 26 1 2.9173 -1.1205 1.0286 27 1 3.4768 1.5824 1.4241 28 1 4.2375 0.2612 2.3430 29 1 3.5417 1.8350 5.5418 30 1 4.2756 0.4098 4.7679 31 1 1.3000 1.0913 4.8308 32 1 2.1022 -0.1943 5.7657 33 1 0.5703 -1.7538 4.5099 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710913087.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:51 Heat of formation + Delta-G solvation = -100.139639 kcal Electronic energy + Delta-G solvation = -15344.835771 eV Core-core repulsion = 12791.317229 eV Total energy + Delta-G solvation = -2553.518541 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.56351 -36.41997 -35.71969 -32.57300 -31.56233 -30.47698 -27.14340 -25.19338 -24.28361 -22.81444 -20.18695 -19.66357 -17.30880 -17.02650 -16.10358 -15.79912 -15.16102 -14.72024 -14.21563 -13.66825 -13.52039 -12.96792 -12.84815 -12.47245 -12.17838 -11.83720 -11.30832 -11.09101 -11.01340 -10.93059 -10.61299 -10.36857 -10.19798 -9.79403 -9.71360 -9.53364 -9.00605 -8.60851 -7.38357 -6.12327 -4.13012 3.23940 3.33856 3.36792 3.89127 4.37098 4.37266 4.69186 4.86286 4.97647 5.12862 5.25115 5.35540 5.38779 5.54523 5.64314 5.73888 5.81331 6.00024 6.13679 6.34257 6.47273 6.75208 6.88037 6.92965 7.22010 7.44871 7.63811 7.89652 7.97530 8.38042 8.64699 8.97350 9.51751 11.00653 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.037601 B = 0.009502 C = 0.008409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.481297 B = 2946.095672 C = 3328.818107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.180 3.820 3 H 0.003 0.997 4 C -0.518 4.518 5 H 0.080 0.920 6 C 0.074 3.926 7 N -0.896 5.896 8 Si 0.872 3.128 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.264 1.264 12 N -0.662 5.662 13 C 0.060 3.940 14 H 0.085 0.915 15 C 0.034 3.966 16 O -0.384 6.384 17 C 0.063 3.937 18 C -0.190 4.190 19 C 0.118 3.882 20 H 0.052 0.948 21 O -0.543 6.543 22 H 0.038 0.962 23 H 0.051 0.949 24 H 0.022 0.978 25 H 0.265 0.735 26 H 0.338 0.662 27 H 0.099 0.901 28 H 0.054 0.946 29 H 0.092 0.908 30 H 0.049 0.951 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.364 0.636 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.870 2.655 15.843 16.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.072 3.928 3 H 0.021 0.979 4 C -0.557 4.557 5 H 0.098 0.902 6 C -0.129 4.129 7 N -0.533 5.533 8 Si 0.700 3.300 9 H -0.202 1.202 10 H -0.213 1.213 11 H -0.189 1.189 12 N -0.295 5.295 13 C -0.051 4.051 14 H 0.103 0.897 15 C -0.044 4.044 16 O -0.302 6.302 17 C -0.014 4.014 18 C -0.229 4.229 19 C 0.058 3.942 20 H 0.070 0.930 21 O -0.346 6.346 22 H 0.057 0.943 23 H 0.070 0.930 24 H 0.041 0.959 25 H 0.074 0.926 26 H 0.157 0.843 27 H 0.117 0.883 28 H 0.072 0.928 29 H 0.110 0.890 30 H 0.068 0.932 31 H 0.097 0.903 32 H 0.091 0.909 33 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 0.247 2.935 15.193 15.476 hybrid contribution 0.854 0.980 0.229 1.320 sum 1.101 3.915 15.422 15.949 Atomic orbital electron populations 1.21809 0.97871 1.00764 0.97668 1.19599 0.92694 0.92294 0.88165 0.97917 1.21078 1.43615 0.95926 0.95067 0.90202 1.25023 0.94401 0.98142 0.95329 1.69898 1.45994 1.35793 1.01643 0.86937 0.79087 0.86622 0.77398 1.20230 1.21323 1.18888 1.60722 1.32472 1.31499 1.04766 1.22195 0.97021 0.94136 0.91786 0.89672 1.23556 0.97372 0.94650 0.88854 1.87925 1.94310 1.34195 1.13731 1.22494 0.95642 0.96213 0.87045 1.23028 0.99803 1.00568 0.99488 1.21803 0.86077 0.92702 0.93656 0.93035 1.86729 1.35187 1.67719 1.44920 0.94268 0.92955 0.95898 0.92555 0.84325 0.88295 0.92806 0.88981 0.93234 0.90337 0.90907 0.79089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.84 9.40 37.16 0.35 -2.49 16 2 C 0.18 4.33 2.08 -68.86 -0.14 4.18 16 3 H 0.00 0.08 4.31 -51.93 -0.22 -0.15 16 4 C -0.52 -14.46 8.84 -34.44 -0.30 -14.76 16 5 H 0.08 2.44 8.06 -52.49 -0.42 2.02 16 6 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 7 N -0.90 -27.13 13.96 55.43 0.77 -26.35 16 8 Si 0.87 21.51 26.99 -169.99 -4.59 16.92 16 9 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 10 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 11 H -0.26 -6.35 6.82 56.52 0.39 -5.96 16 12 N -0.66 -13.86 5.98 -100.80 -0.60 -14.46 16 13 C 0.06 1.07 2.14 -67.57 -0.14 0.93 16 14 H 0.09 1.67 7.11 -51.93 -0.37 1.30 16 15 C 0.03 0.57 6.09 37.21 0.23 0.79 16 16 O -0.38 -6.00 10.77 -35.23 -0.38 -6.38 16 17 C 0.06 0.74 6.84 37.20 0.25 0.99 16 18 C -0.19 -2.20 5.76 -26.59 -0.15 -2.36 16 19 C 0.12 1.71 3.19 -26.55 -0.08 1.63 16 20 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 21 O -0.54 -8.32 13.26 -35.23 -0.47 -8.78 16 22 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 23 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 24 H 0.02 0.48 7.38 -51.93 -0.38 0.10 16 25 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 26 H 0.34 6.99 8.06 -39.29 -0.32 6.67 16 27 H 0.10 1.79 7.49 -51.93 -0.39 1.40 16 28 H 0.05 0.82 8.09 -51.93 -0.42 0.40 16 29 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.36 3.68 9.09 45.56 0.41 4.09 16 LS Contribution 266.69 15.07 4.02 4.02 Total: -1.00 -31.48 266.69 -5.56 -37.04 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -4.22 Total: 7.08 kcal Atomic # 6 Polarization: -8.98 SS G_CDS: -0.10 Total: -9.08 kcal Atomic # 7 Polarization: -40.99 SS G_CDS: 0.17 Total: -40.82 kcal Atomic # 8 Polarization: -14.31 SS G_CDS: -0.85 Total: -15.16 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.59 Total: 16.92 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -31.48 -5.56 -37.04 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710913087.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.101 kcal (2) G-P(sol) polarization free energy of solvation -31.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds