Wall clock time and date at job start Mon Mar 30 2020 03:24:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 H 1.09000 * 109.46797 * 2 1 4 4 C 1.50703 * 109.46817 * 240.00271 * 2 1 3 5 5 H 1.07999 * 119.99583 * 274.99649 * 4 2 1 6 6 C 1.37875 * 119.99973 * 95.00002 * 4 2 1 7 7 N 1.31514 * 120.00237 * 184.91029 * 6 4 2 8 8 Si 1.86803 * 119.99971 * 4.90980 * 6 4 2 9 9 H 1.48506 * 109.46853 * 84.83242 * 8 6 4 10 10 H 1.48503 * 109.47230 * 204.82966 * 8 6 4 11 11 H 1.48499 * 109.47579 * 324.83492 * 8 6 4 12 12 N 1.46895 * 109.46833 * 120.00441 * 2 1 3 13 13 C 1.46901 * 110.99843 * 274.99769 * 12 2 1 14 14 H 1.09000 * 109.57328 * 34.84731 * 13 12 2 15 15 C 1.53099 * 109.52208 * 274.69033 * 13 12 2 16 16 O 1.42904 * 109.41402 * 182.48352 * 15 13 12 17 17 C 1.42908 * 114.09448 * 61.15906 * 16 15 13 18 18 C 1.53085 * 109.41613 * 298.83930 * 17 16 15 19 19 C 1.53171 * 109.52287 * 155.00598 * 13 12 2 20 20 H 1.09002 * 109.54799 * 57.02039 * 19 13 12 21 21 O 1.42904 * 109.61719 * 296.79356 * 19 13 12 22 22 H 1.08996 * 109.46998 * 55.04611 * 1 2 3 23 23 H 1.09003 * 109.46719 * 175.04319 * 1 2 3 24 24 H 1.08999 * 109.46789 * 295.04018 * 1 2 3 25 25 H 0.96995 * 120.00324 * 180.02562 * 7 6 4 26 26 H 1.00897 * 110.99765 * 151.04844 * 12 2 1 27 27 H 1.08994 * 109.48174 * 62.50477 * 15 13 12 28 28 H 1.09003 * 109.49003 * 302.46988 * 15 13 12 29 29 H 1.08998 * 109.47955 * 178.85883 * 17 16 15 30 30 H 1.09002 * 109.48336 * 58.82476 * 17 16 15 31 31 H 1.09003 * 109.52515 * 297.70385 * 18 17 16 32 32 H 1.09003 * 109.57733 * 177.54852 * 18 17 16 33 33 H 0.96703 * 114.00076 * 180.22048 * 21 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.1355 -1.7854 -1.2291 6 6 2.3602 0.0122 -2.3581 7 7 2.7060 -0.6130 -3.4623 8 14 2.3134 1.8792 -2.3174 9 1 3.5990 2.3950 -1.7821 10 1 2.1057 2.3992 -3.6928 11 1 1.1985 2.3276 -1.4450 12 7 2.0197 -0.6926 1.1994 13 6 2.0825 0.2225 2.3469 14 1 1.2599 0.9354 2.2908 15 6 3.4149 0.9762 2.3278 16 8 3.4982 1.8228 3.4761 17 6 3.4527 1.1231 4.7213 18 6 2.1219 0.3753 4.8365 19 6 1.9771 -0.5796 3.6475 20 1 2.7705 -1.3263 3.6809 21 8 0.7060 -1.2297 3.7086 22 1 -0.3633 0.5887 -0.8423 23 1 -0.3633 -1.0239 -0.0888 24 1 -0.3633 0.4350 0.9311 25 1 2.9370 -0.1047 -4.2554 26 1 2.9173 -1.1205 1.0286 27 1 3.4768 1.5824 1.4241 28 1 4.2375 0.2612 2.3430 29 1 3.5417 1.8350 5.5418 30 1 4.2756 0.4098 4.7679 31 1 1.3000 1.0913 4.8308 32 1 2.1022 -0.1943 5.7657 33 1 0.5703 -1.7538 4.5099 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710913087.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:51 Heat of formation + Delta-G solvation = -127.002500 kcal Electronic energy + Delta-G solvation = -15346.000632 eV Core-core repulsion = 12791.317229 eV Total energy + Delta-G solvation = -2554.683402 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.75936 -37.71330 -37.25512 -34.57050 -32.72176 -32.09068 -28.68357 -27.27823 -25.44574 -24.02643 -21.54692 -21.41465 -19.16395 -18.35048 -17.35297 -17.06625 -16.76671 -16.03831 -15.74933 -15.19127 -14.94193 -14.57918 -14.21112 -14.04312 -13.80592 -13.15897 -13.01522 -12.77049 -12.63656 -12.43035 -12.31196 -11.86476 -11.83063 -11.46641 -11.07417 -10.85237 -10.76023 -10.69138 -9.04028 -8.33480 -6.38968 1.29199 1.32669 1.42613 2.29293 2.77440 3.00206 3.27220 3.46628 3.79719 3.90296 4.03206 4.13341 4.18750 4.47090 4.55652 4.59203 4.69366 4.75798 4.81533 4.87550 4.96090 5.04492 5.06764 5.25293 5.47963 5.65562 5.95778 6.15605 6.50942 6.65638 6.81319 7.06605 7.30445 8.83064 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.037601 B = 0.009502 C = 0.008409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.481297 B = 2946.095672 C = 3328.818107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.185 3.815 3 H 0.004 0.996 4 C -0.520 4.520 5 H 0.039 0.961 6 C 0.020 3.980 7 N -0.941 5.941 8 Si 0.935 3.065 9 H -0.264 1.264 10 H -0.284 1.284 11 H -0.253 1.253 12 N -0.667 5.667 13 C 0.057 3.943 14 H 0.065 0.935 15 C 0.042 3.958 16 O -0.400 6.400 17 C 0.054 3.946 18 C -0.179 4.179 19 C 0.120 3.880 20 H 0.061 0.939 21 O -0.569 6.569 22 H 0.036 0.964 23 H 0.040 0.960 24 H 0.039 0.961 25 H 0.267 0.733 26 H 0.337 0.663 27 H 0.078 0.922 28 H 0.066 0.934 29 H 0.118 0.882 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.109 0.891 33 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.042 3.826 18.223 18.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.077 3.923 3 H 0.021 0.979 4 C -0.558 4.558 5 H 0.057 0.943 6 C -0.178 4.178 7 N -0.581 5.581 8 Si 0.759 3.241 9 H -0.189 1.189 10 H -0.210 1.210 11 H -0.177 1.177 12 N -0.298 5.298 13 C -0.054 4.054 14 H 0.083 0.917 15 C -0.037 4.037 16 O -0.318 6.318 17 C -0.022 4.022 18 C -0.217 4.217 19 C 0.060 3.940 20 H 0.079 0.921 21 O -0.375 6.375 22 H 0.055 0.945 23 H 0.059 0.941 24 H 0.058 0.942 25 H 0.077 0.923 26 H 0.155 0.845 27 H 0.096 0.904 28 H 0.085 0.915 29 H 0.136 0.864 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.127 0.873 33 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 0.414 4.096 17.622 18.096 hybrid contribution 0.789 0.512 -0.425 1.032 sum 1.203 4.608 17.197 17.844 Atomic orbital electron populations 1.21718 0.97219 1.00171 0.98451 1.19434 0.93121 0.91919 0.87872 0.97862 1.21236 1.43363 0.94291 0.96955 0.94291 1.25822 0.94100 1.03128 0.94771 1.70033 1.47661 1.37865 1.02541 0.85924 0.79921 0.80549 0.77701 1.18913 1.20954 1.17681 1.60641 1.32518 1.32178 1.04505 1.22282 0.97069 0.93925 0.92098 0.91674 1.23300 0.96966 0.94454 0.88988 1.87905 1.94373 1.34869 1.14638 1.22838 0.96220 0.97268 0.85898 1.22938 0.99316 0.99903 0.99535 1.21746 0.86170 0.93208 0.92886 0.92111 1.86660 1.35510 1.68433 1.46944 0.94504 0.94069 0.94167 0.92341 0.84481 0.90414 0.91546 0.86363 0.91610 0.91363 0.87263 0.76443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.37 9.40 71.99 0.68 -4.70 16 2 C 0.19 8.88 2.08 44.17 0.09 8.97 16 3 H 0.00 0.18 4.31 -2.39 -0.01 0.17 16 4 C -0.52 -29.67 8.84 25.60 0.23 -29.44 16 5 H 0.04 2.49 8.06 -2.91 -0.02 2.46 16 6 C 0.02 1.18 5.47 84.65 0.46 1.64 16 7 N -0.94 -58.32 13.96 21.45 0.30 -58.02 16 8 Si 0.93 44.28 26.99 68.60 1.85 46.13 16 9 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 10 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16 11 H -0.25 -11.42 6.82 99.48 0.68 -10.74 16 12 N -0.67 -27.70 5.98 -472.83 -2.83 -30.53 16 13 C 0.06 1.97 2.14 45.01 0.10 2.07 16 14 H 0.06 2.49 7.11 -2.39 -0.02 2.47 16 15 C 0.04 1.32 6.09 72.02 0.44 1.76 16 16 O -0.40 -11.53 10.77 -148.98 -1.60 -13.13 16 17 C 0.05 1.06 6.84 72.01 0.49 1.55 16 18 C -0.18 -3.47 5.76 30.68 0.18 -3.30 16 19 C 0.12 3.18 3.19 30.71 0.10 3.27 16 20 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 21 O -0.57 -16.15 13.26 -148.98 -1.98 -18.13 16 22 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 23 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 24 H 0.04 1.67 7.38 -2.39 -0.02 1.65 16 25 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 26 H 0.34 13.98 8.06 -89.70 -0.72 13.26 16 27 H 0.08 2.76 7.49 -2.39 -0.02 2.74 16 28 H 0.07 1.91 8.09 -2.39 -0.02 1.89 16 29 H 0.12 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.39 6.70 9.09 -74.06 -0.67 6.03 16 Total: -1.00 -68.42 266.69 -1.81 -70.23 By element: Atomic # 1 Polarization: 21.94 SS G_CDS: -0.32 Total: 21.62 kcal Atomic # 6 Polarization: -20.93 SS G_CDS: 2.76 Total: -18.17 kcal Atomic # 7 Polarization: -86.02 SS G_CDS: -2.53 Total: -88.55 kcal Atomic # 8 Polarization: -27.68 SS G_CDS: -3.58 Total: -31.26 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 1.85 Total: 46.13 kcal Total: -68.42 -1.81 -70.23 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710913087.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.773 kcal (2) G-P(sol) polarization free energy of solvation -68.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds