Wall clock time and date at job start Mon Mar 30 2020 03:24:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08996 * 109.46882 * 2 1 4 4 C 1.50695 * 109.46929 * 240.00038 * 2 1 3 5 5 H 1.08001 * 120.00138 * 239.99730 * 4 2 1 6 6 C 1.37875 * 120.00073 * 60.00159 * 4 2 1 7 7 N 1.31510 * 120.00373 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00005 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47434 * 89.99976 * 8 6 4 10 10 H 1.48501 * 109.47283 * 210.00079 * 8 6 4 11 11 H 1.48498 * 109.47290 * 329.99933 * 8 6 4 12 12 N 1.46897 * 109.47030 * 119.99907 * 2 1 3 13 13 C 1.46900 * 110.99933 * 205.88759 * 12 2 1 14 14 H 1.09000 * 109.52476 * 327.87836 * 13 12 2 15 15 C 1.53093 * 109.52241 * 88.00906 * 13 12 2 16 16 O 1.42897 * 109.41554 * 177.51401 * 15 13 12 17 17 C 1.42908 * 114.10087 * 298.84055 * 16 15 13 18 18 C 1.53087 * 109.41291 * 61.15369 * 17 16 15 19 19 C 1.53182 * 109.22088 * 302.36401 * 18 17 16 20 20 H 1.08998 * 109.54052 * 297.14865 * 19 18 17 21 21 O 1.42897 * 109.54482 * 176.87795 * 19 18 17 22 22 H 1.08991 * 109.46945 * 179.46816 * 1 2 3 23 23 H 1.09000 * 109.46665 * 299.46989 * 1 2 3 24 24 H 1.09003 * 109.46738 * 59.46573 * 1 2 3 25 25 H 0.97000 * 120.00256 * 179.97438 * 7 6 4 26 26 H 1.00906 * 110.99940 * 81.93242 * 12 2 1 27 27 H 1.09001 * 109.48107 * 57.52712 * 15 13 12 28 28 H 1.09002 * 109.47731 * 297.49585 * 15 13 12 29 29 H 1.09005 * 109.47356 * 301.17964 * 17 16 15 30 30 H 1.08990 * 109.48274 * 181.14135 * 17 16 15 31 31 H 1.09001 * 109.52250 * 62.30218 * 18 17 16 32 32 H 1.08998 * 109.52760 * 182.42510 * 18 17 16 33 33 H 0.96700 * 113.99962 * 60.00303 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3225 -1.1195 -4.0079 9 1 1.3448 -2.1615 -4.4124 10 1 2.4873 -0.1402 -5.1120 11 1 3.6308 -1.7565 -3.7120 12 7 2.0197 -0.6925 1.1994 13 6 3.3584 -0.2164 1.5725 14 1 3.9090 0.0633 0.6743 15 6 3.2307 0.9995 2.4938 16 8 4.5324 1.4252 2.9018 17 6 5.2641 0.4421 3.6368 18 6 5.4735 -0.7962 2.7615 19 6 4.1109 -1.3305 2.3095 20 1 3.5354 -1.6446 3.1803 21 8 4.3004 -2.4430 1.4329 22 1 -0.3633 -1.0275 -0.0095 23 1 -0.3633 0.5056 0.8947 24 1 -0.3633 0.5221 -0.8852 25 1 0.7088 1.1613 -3.4844 26 1 2.0156 -1.6927 1.0665 27 1 2.6444 0.7299 3.3723 28 1 2.7341 1.8096 1.9598 29 1 4.7044 0.1653 4.5303 30 1 6.2323 0.8507 3.9262 31 1 6.0677 -0.5285 1.8878 32 1 5.9938 -1.5637 3.3345 33 1 4.7776 -3.1826 1.8336 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710913088.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:53 Heat of formation + Delta-G solvation = -103.127461 kcal Electronic energy + Delta-G solvation = -15345.131461 eV Core-core repulsion = 12791.483358 eV Total energy + Delta-G solvation = -2553.648103 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.38162 -36.44420 -35.42082 -32.53437 -31.45149 -29.91412 -26.82198 -24.97416 -24.20347 -22.57206 -19.94786 -19.79925 -17.22837 -16.64263 -15.81689 -15.69788 -14.83747 -14.71782 -14.14563 -13.81516 -13.03299 -12.77468 -12.72345 -12.31857 -11.98751 -11.36766 -11.32246 -10.95516 -10.86410 -10.69890 -10.33025 -10.19484 -9.96097 -9.71139 -9.62490 -9.36422 -9.01439 -8.34117 -7.29755 -5.93779 -4.04216 3.32302 3.38704 3.43648 4.07260 4.42294 4.47309 4.82594 4.99180 5.10769 5.32522 5.36052 5.39168 5.59883 5.69910 5.82995 5.89300 6.12012 6.23164 6.41885 6.70186 6.91590 7.16960 7.31760 7.39524 7.57949 7.82545 7.87999 8.12339 8.22699 8.35433 8.69967 9.07814 9.62979 11.08089 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.034411 B = 0.009181 C = 0.008348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.488626 B = 3049.177658 C = 3353.232046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.206 3.794 3 H 0.031 0.969 4 C -0.538 4.538 5 H 0.058 0.942 6 C 0.064 3.936 7 N -0.890 5.890 8 Si 0.890 3.110 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.275 1.275 12 N -0.683 5.683 13 C 0.068 3.932 14 H 0.065 0.935 15 C 0.075 3.925 16 O -0.386 6.386 17 C 0.065 3.935 18 C -0.187 4.187 19 C 0.101 3.899 20 H 0.057 0.943 21 O -0.554 6.554 22 H 0.024 0.976 23 H 0.012 0.988 24 H 0.082 0.918 25 H 0.260 0.740 26 H 0.340 0.660 27 H 0.053 0.947 28 H 0.100 0.900 29 H 0.048 0.952 30 H 0.090 0.910 31 H 0.079 0.921 32 H 0.070 0.930 33 H 0.369 0.631 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.768 -3.025 11.071 13.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.099 3.901 3 H 0.049 0.951 4 C -0.577 4.577 5 H 0.076 0.924 6 C -0.137 4.137 7 N -0.528 5.528 8 Si 0.718 3.282 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.200 1.200 12 N -0.315 5.315 13 C -0.044 4.044 14 H 0.083 0.917 15 C -0.003 4.003 16 O -0.303 6.303 17 C -0.012 4.012 18 C -0.226 4.226 19 C 0.041 3.959 20 H 0.075 0.925 21 O -0.358 6.358 22 H 0.043 0.957 23 H 0.031 0.969 24 H 0.100 0.900 25 H 0.070 0.930 26 H 0.158 0.842 27 H 0.071 0.929 28 H 0.118 0.882 29 H 0.066 0.934 30 H 0.109 0.891 31 H 0.098 0.902 32 H 0.089 0.911 33 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 6.104 -1.887 10.909 12.642 hybrid contribution 1.124 -1.587 -1.225 2.298 sum 7.228 -3.474 9.684 12.574 Atomic orbital electron populations 1.21688 0.97755 0.99077 0.99805 1.19209 0.92336 0.93935 0.84665 0.95111 1.21890 1.31358 1.12786 0.91694 0.92407 1.24936 0.94946 0.94897 0.98952 1.69884 1.36743 1.22877 1.23344 0.86631 0.79293 0.79443 0.82843 1.20724 1.21296 1.20031 1.60932 1.20066 1.10563 1.39950 1.21976 0.91823 0.92702 0.97852 0.91740 1.22665 0.82877 0.97425 0.97299 1.87932 1.29524 1.39132 1.73759 1.22449 0.96656 0.88871 0.93251 1.22976 0.99153 0.98940 1.01538 1.22081 0.94000 0.87390 0.92398 0.92550 1.86675 1.79751 1.27431 1.41933 0.95680 0.96874 0.89981 0.93003 0.84211 0.92894 0.88162 0.93370 0.89138 0.90217 0.91149 0.78506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.13 9.29 37.16 0.35 -2.78 16 2 C 0.21 5.31 2.40 -68.86 -0.16 5.15 16 3 H 0.03 0.86 7.37 -51.93 -0.38 0.48 16 4 C -0.54 -15.16 8.32 -34.44 -0.29 -15.45 16 5 H 0.06 1.67 7.73 -52.49 -0.41 1.26 16 6 C 0.06 1.83 5.30 -17.82 -0.09 1.74 16 7 N -0.89 -25.89 11.32 55.43 0.63 -25.26 16 8 Si 0.89 22.00 29.54 -169.99 -5.02 16.97 16 9 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 10 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 11 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 12 N -0.68 -14.93 6.07 -100.73 -0.61 -15.55 16 13 C 0.07 1.33 2.19 -67.50 -0.15 1.18 16 14 H 0.06 1.51 7.65 -51.93 -0.40 1.11 16 15 C 0.07 1.32 6.36 37.21 0.24 1.55 16 16 O -0.39 -6.42 10.77 -35.23 -0.38 -6.80 16 17 C 0.06 0.82 6.84 37.20 0.25 1.08 16 18 C -0.19 -2.42 5.76 -26.59 -0.15 -2.58 16 19 C 0.10 1.58 3.04 -26.47 -0.08 1.50 16 20 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 21 O -0.55 -9.07 12.65 -35.23 -0.45 -9.51 16 22 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 23 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 24 H 0.08 2.23 6.08 -51.93 -0.32 1.92 16 25 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 26 H 0.34 7.61 7.43 -39.29 -0.29 7.31 16 27 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.10 1.89 7.70 -51.93 -0.40 1.49 16 29 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.37 4.01 9.08 45.56 0.41 4.43 16 LS Contribution 267.65 15.07 4.03 4.03 Total: -1.00 -30.64 267.65 -6.18 -36.82 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: -4.30 Total: 7.91 kcal Atomic # 6 Polarization: -8.53 SS G_CDS: -0.09 Total: -8.62 kcal Atomic # 7 Polarization: -40.82 SS G_CDS: 0.02 Total: -40.81 kcal Atomic # 8 Polarization: -15.49 SS G_CDS: -0.82 Total: -16.31 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -30.64 -6.18 -36.82 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710913088.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.306 kcal (2) G-P(sol) polarization free energy of solvation -30.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds