Wall clock time and date at job start Mon Mar 30 2020 02:28:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46902 * 110.99587 * 2 1 4 4 C 1.50699 * 109.47430 * 293.95501 * 3 2 1 5 5 H 1.07997 * 119.99885 * 359.97438 * 4 3 2 6 6 C 1.37878 * 120.00109 * 180.02562 * 4 3 2 7 7 N 1.31514 * 119.99761 * 359.97438 * 6 4 3 8 8 Si 1.86793 * 120.00105 * 179.97438 * 6 4 3 9 9 H 1.48498 * 109.47183 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.47050 * 120.00052 * 8 6 4 11 11 H 1.48497 * 109.47404 * 239.99865 * 8 6 4 12 12 C 1.46901 * 111.00241 * 123.95311 * 2 1 3 13 13 C 1.53002 * 109.46906 * 66.05089 * 12 2 1 14 14 H 1.09008 * 110.91554 * 297.84836 * 13 12 2 15 15 C 1.55132 * 110.85699 * 174.23659 * 13 12 2 16 16 C 1.54015 * 106.98467 * 199.75740 * 15 13 12 17 17 C 1.54276 * 108.84323 * 47.10305 * 16 15 13 18 18 S 1.83098 * 104.75016 * 332.19840 * 17 16 15 19 19 H 1.08996 * 109.47391 * 296.04377 * 1 2 3 20 20 H 1.09001 * 109.46929 * 56.04732 * 1 2 3 21 21 H 1.09001 * 109.46845 * 176.04705 * 1 2 3 22 22 H 1.09006 * 109.47249 * 53.95864 * 3 2 1 23 23 H 1.09008 * 109.47040 * 173.95110 * 3 2 1 24 24 H 0.97002 * 120.00291 * 179.97438 * 7 6 4 25 25 H 1.08996 * 109.46875 * 306.05336 * 12 2 1 26 26 H 1.08992 * 109.47270 * 186.04651 * 12 2 1 27 27 H 1.08998 * 109.97438 * 319.06121 * 15 13 12 28 28 H 1.09002 * 109.97575 * 80.34158 * 15 13 12 29 29 H 1.09005 * 109.57728 * 287.25705 * 16 15 13 30 30 H 1.09009 * 109.72911 * 167.04397 * 16 15 13 31 31 H 1.09002 * 110.40402 * 213.34657 * 17 16 15 32 32 H 1.08998 * 110.39950 * 91.04553 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0472 -1.2984 5 1 1.0746 1.5113 -2.0487 6 6 2.0275 3.3493 -1.5288 7 7 2.7126 4.0016 -0.6152 8 14 1.5837 4.1866 -3.1385 9 1 0.8154 3.2444 -3.9912 10 1 0.7566 5.3882 -2.8598 11 1 2.8255 4.5933 -3.8438 12 6 1.9955 -0.7660 1.1376 13 6 1.6316 -2.2426 0.9703 14 1 0.5501 -2.3790 0.9674 15 6 2.2940 -3.1036 2.0777 16 6 2.3072 -4.5575 1.5697 17 6 2.8289 -4.5733 0.1179 18 16 2.3807 -2.9310 -0.5564 19 1 -0.3634 0.4512 0.9233 20 1 -0.3633 0.5740 -0.8525 21 1 -0.3633 -1.0252 -0.0708 22 1 1.5610 1.9274 0.8310 23 1 3.0797 1.3445 0.1083 24 1 2.9878 4.9176 -0.7774 25 1 1.5611 -0.3873 2.0627 26 1 3.0797 -0.6611 1.1756 27 1 3.3144 -2.7631 2.2537 28 1 1.7145 -3.0361 2.9985 29 1 1.2963 -4.9641 1.5996 30 1 2.9604 -5.1615 2.1997 31 1 2.3415 -5.3641 -0.4525 32 1 3.9105 -4.7074 0.1042 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000715800763.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:43 Heat of formation + Delta-G solvation = -27.394367 kcal Electronic energy + Delta-G solvation = -12618.417807 eV Core-core repulsion = 10510.806608 eV Total energy + Delta-G solvation = -2107.611199 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.79024 -36.65593 -34.69740 -31.73005 -29.11999 -27.73941 -26.14760 -23.90105 -21.87933 -21.56898 -18.54773 -17.63273 -16.80053 -16.51535 -16.06120 -15.76990 -15.12500 -14.75905 -14.44712 -13.89699 -13.59528 -13.34566 -12.93252 -12.76207 -12.66594 -12.43296 -12.34593 -12.17853 -12.12942 -11.74429 -11.62375 -11.23197 -10.64583 -10.56227 -9.00952 -8.51322 -8.21683 -6.31394 1.00595 1.39316 1.40564 1.54425 1.71275 2.39719 3.10552 3.23877 3.76307 3.80169 4.01302 4.10179 4.28379 4.38039 4.48363 4.56982 4.68042 4.71492 4.80876 4.92725 4.98827 5.01488 5.05443 5.15427 5.24435 5.29646 5.63770 6.04011 6.31827 6.61911 6.84549 7.38126 8.89785 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.055093 B = 0.006727 C = 0.006480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.112187 B = 4161.571914 C = 4319.876327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.545 5.545 3 C 0.210 3.790 4 C -0.522 4.522 5 H 0.059 0.941 6 C 0.001 3.999 7 N -0.935 5.935 8 Si 0.970 3.030 9 H -0.266 1.266 10 H -0.275 1.275 11 H -0.278 1.278 12 C 0.072 3.928 13 C -0.020 4.020 14 H 0.098 0.902 15 C -0.122 4.122 16 C -0.118 4.118 17 C -0.077 4.077 18 S -0.333 6.333 19 H 0.015 0.985 20 H 0.054 0.946 21 H 0.074 0.926 22 H -0.036 1.036 23 H 0.000 1.000 24 H 0.265 0.735 25 H 0.042 0.958 26 H 0.063 0.937 27 H 0.074 0.926 28 H 0.103 0.897 29 H 0.083 0.917 30 H 0.105 0.895 31 H 0.102 0.898 32 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.251 -16.530 5.902 17.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.269 5.269 3 C 0.084 3.916 4 C -0.560 4.560 5 H 0.077 0.923 6 C -0.197 4.197 7 N -0.576 5.576 8 Si 0.795 3.205 9 H -0.190 1.190 10 H -0.201 1.201 11 H -0.203 1.203 12 C -0.057 4.057 13 C -0.148 4.148 14 H 0.116 0.884 15 C -0.161 4.161 16 C -0.156 4.156 17 C -0.225 4.225 18 S -0.108 6.108 19 H 0.033 0.967 20 H 0.073 0.927 21 H 0.093 0.907 22 H -0.018 1.018 23 H 0.019 0.981 24 H 0.074 0.926 25 H 0.060 0.940 26 H 0.081 0.919 27 H 0.093 0.907 28 H 0.122 0.878 29 H 0.101 0.899 30 H 0.123 0.877 31 H 0.120 0.880 32 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -1.866 -16.141 4.408 16.835 hybrid contribution -0.379 0.906 1.029 1.422 sum -2.245 -15.235 5.437 16.331 Atomic orbital electron populations 1.22209 0.87692 1.00971 0.99782 1.62002 1.08073 1.15206 1.41603 1.19352 0.93488 0.83725 0.95044 1.21474 1.34745 0.97456 1.02320 0.92287 1.25913 0.94994 0.98013 1.00758 1.70088 1.39419 1.11920 1.36151 0.85321 0.78118 0.78176 0.78926 1.19001 1.20071 1.20325 1.21988 0.99868 0.91809 0.92038 1.24053 1.01969 0.95922 0.92890 0.88365 1.22712 1.01829 0.93711 0.97850 1.22282 1.03377 0.96312 0.93665 1.24130 1.04597 0.94932 0.98888 1.88543 1.79679 1.18309 1.24239 0.96693 0.92741 0.90727 1.01800 0.98142 0.92639 0.93966 0.91894 0.90703 0.87840 0.89859 0.87686 0.87956 0.88777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.68 9.15 127.69 1.17 2.84 16 2 N -0.54 -24.77 4.43 -927.04 -4.11 -28.87 16 3 C 0.21 11.72 4.72 85.56 0.40 12.12 16 4 C -0.52 -30.93 8.46 25.60 0.22 -30.72 16 5 H 0.06 3.49 7.12 -2.91 -0.02 3.47 16 6 C 0.00 0.06 5.46 84.65 0.46 0.52 16 7 N -0.94 -57.74 13.29 21.45 0.28 -57.46 16 8 Si 0.97 45.82 29.54 68.60 2.03 47.85 16 9 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 10 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 11 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 12 C 0.07 2.64 4.53 86.30 0.39 3.04 16 13 C -0.02 -0.56 3.00 31.33 0.09 -0.47 16 14 H 0.10 2.66 6.75 -2.38 -0.02 2.65 16 15 C -0.12 -2.41 5.89 31.67 0.19 -2.23 16 16 C -0.12 -1.85 6.40 31.37 0.20 -1.65 16 17 C -0.08 -1.58 7.33 72.41 0.53 -1.05 16 18 S -0.33 -10.85 22.43 -56.49 -1.27 -12.12 16 19 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 20 H 0.05 2.39 6.76 -2.39 -0.02 2.38 16 21 H 0.07 2.53 6.54 -2.39 -0.02 2.52 16 22 H -0.04 -2.12 8.12 -2.38 -0.02 -2.14 16 23 H 0.00 0.03 7.93 -2.38 -0.02 0.01 16 24 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 25 H 0.04 1.46 8.12 -2.39 -0.02 1.44 16 26 H 0.06 2.45 7.91 -2.39 -0.02 2.43 16 27 H 0.07 1.57 8.06 -2.39 -0.02 1.55 16 28 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 30 H 0.10 1.15 8.14 -2.38 -0.02 1.13 16 31 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -68.42 270.43 1.66 -66.76 By element: Atomic # 1 Polarization: 0.35 SS G_CDS: 1.07 Total: 1.42 kcal Atomic # 6 Polarization: -21.24 SS G_CDS: 3.65 Total: -17.58 kcal Atomic # 7 Polarization: -82.51 SS G_CDS: -3.82 Total: -86.33 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.85 kcal Atomic # 16 Polarization: -10.85 SS G_CDS: -1.27 Total: -12.12 kcal Total: -68.42 1.66 -66.76 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715800763.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.368 kcal (2) G-P(sol) polarization free energy of solvation -68.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds