Wall clock time and date at job start Mon Mar 30 2020 02:39:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99823 * 2 1 4 4 H 1.48504 * 109.47066 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47253 * 299.99369 * 3 2 1 6 6 H 1.48501 * 109.47281 * 59.99569 * 3 2 1 7 7 C 1.37875 * 120.00314 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00536 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99984 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47280 * 179.97438 * 9 7 2 11 11 N 1.46905 * 109.47049 * 179.97438 * 10 9 7 12 12 C 1.46903 * 110.99546 * 179.97438 * 11 10 9 13 13 C 1.53003 * 109.46626 * 180.02562 * 12 11 10 14 14 C 1.52996 * 113.56741 * 45.72768 * 13 12 11 15 15 O 1.42896 * 109.47417 * 184.60381 * 14 13 12 16 16 C 1.53367 * 114.56575 * 180.02562 * 13 12 11 17 17 O 1.43355 * 88.44795 * 86.60805 * 16 13 12 18 18 C 1.43354 * 88.31830 * 28.15101 * 17 16 13 19 19 H 0.96993 * 120.00273 * 0.02562 * 1 2 3 20 20 H 1.08996 * 109.47064 * 59.99915 * 9 7 2 21 21 H 1.09004 * 109.46987 * 300.00160 * 9 7 2 22 22 H 1.09004 * 109.46959 * 60.00223 * 10 9 7 23 23 H 1.09004 * 109.47253 * 300.00011 * 10 9 7 24 24 H 1.00892 * 110.99969 * 303.95040 * 11 10 9 25 25 H 1.09004 * 109.46885 * 60.00960 * 12 11 10 26 26 H 1.08999 * 109.47700 * 300.00166 * 12 11 10 27 27 H 1.08996 * 109.47251 * 304.61006 * 14 13 12 28 28 H 1.09003 * 109.47282 * 64.60513 * 14 13 12 29 29 H 0.96695 * 114.00285 * 179.97438 * 15 14 13 30 30 H 1.09006 * 113.39116 * 331.71487 * 16 13 12 31 31 H 1.09001 * 113.43377 * 201.51549 * 16 13 12 32 32 H 1.08998 * 113.38952 * 86.74569 * 18 17 16 33 33 H 1.09001 * 113.39148 * 216.94625 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6620 0.0005 11 7 1.5109 -4.9343 0.0012 12 6 2.4355 -6.0758 0.0006 13 6 1.6354 -7.3800 0.0006 14 6 0.4807 -7.3893 -1.0031 15 8 -0.2688 -8.5969 -0.8558 16 6 2.4909 -8.6529 0.0006 17 8 2.5396 -8.5733 1.4311 18 6 1.2719 -7.9051 1.3950 19 1 -0.4850 0.8400 -0.0004 20 1 0.6248 -2.5571 -0.8896 21 1 0.6241 -2.5567 0.8903 22 1 2.8720 -3.6043 0.8906 23 1 2.8721 -3.6043 -0.8895 24 1 0.8748 -4.9842 0.7827 25 1 3.0640 -6.0348 0.8902 26 1 3.0628 -6.0349 -0.8898 27 1 -0.1687 -6.5337 -0.8178 28 1 0.8791 -7.3303 -2.0160 29 1 -1.0187 -8.6709 -1.4618 30 1 3.4635 -8.5206 -0.4735 31 1 1.9605 -9.5317 -0.3662 32 1 0.4225 -8.5882 1.3923 33 1 1.1763 -7.1176 2.1426 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000717603398.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:01 Heat of formation + Delta-G solvation = -94.252543 kcal Electronic energy + Delta-G solvation = -14513.009480 eV Core-core repulsion = 11959.746223 eV Total energy + Delta-G solvation = -2553.263258 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.11470 -37.65696 -37.22231 -35.10414 -32.87032 -30.58361 -27.25282 -26.92831 -26.22799 -24.73625 -22.46113 -19.73046 -18.50938 -18.25425 -17.42782 -17.11853 -16.95694 -16.50451 -16.20490 -15.31871 -15.01030 -14.75248 -14.28252 -14.14752 -13.59893 -13.29325 -13.19596 -12.86311 -12.68256 -12.40762 -12.02047 -11.72709 -11.50351 -11.41956 -11.27353 -10.70237 -10.63216 -10.56784 -9.34770 -8.20763 -6.31836 1.40933 1.41198 1.54412 2.40360 2.83803 2.99120 3.13195 3.34263 3.44164 3.86751 4.18755 4.37451 4.44162 4.49081 4.52274 4.54794 4.66105 4.70778 4.81694 4.91455 5.00495 5.06698 5.07384 5.15684 5.44552 5.67285 5.77218 6.09473 6.23561 6.46105 6.85654 6.94579 7.37670 8.91563 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.056966 B = 0.005243 C = 0.005005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.406023 B = 5339.101472 C = 5593.420044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.002 3.998 3 Si 0.966 3.034 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.278 1.278 7 C -0.544 4.544 8 H 0.060 0.940 9 C 0.032 3.968 10 C 0.083 3.917 11 N -0.688 5.688 12 C 0.090 3.910 13 C -0.124 4.124 14 C 0.102 3.898 15 O -0.587 6.587 16 C 0.048 3.952 17 O -0.397 6.397 18 C 0.041 3.959 19 H 0.264 0.736 20 H -0.002 1.002 21 H -0.009 1.009 22 H 0.017 0.983 23 H 0.062 0.938 24 H 0.338 0.662 25 H 0.033 0.967 26 H 0.084 0.916 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.399 0.601 30 H 0.095 0.905 31 H 0.097 0.903 32 H 0.096 0.904 33 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.906 -15.667 -1.950 15.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.196 4.196 3 Si 0.790 3.210 4 H -0.187 1.187 5 H -0.203 1.203 6 H -0.204 1.204 7 C -0.583 4.583 8 H 0.078 0.922 9 C -0.006 4.006 10 C -0.046 4.046 11 N -0.318 5.318 12 C -0.039 4.039 13 C -0.125 4.125 14 C 0.025 3.975 15 O -0.396 6.396 16 C -0.029 4.029 17 O -0.317 6.317 18 C -0.035 4.035 19 H 0.073 0.927 20 H 0.017 0.983 21 H 0.010 0.990 22 H 0.035 0.965 23 H 0.081 0.919 24 H 0.155 0.845 25 H 0.052 0.948 26 H 0.102 0.898 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.249 0.751 30 H 0.113 0.887 31 H 0.115 0.885 32 H 0.114 0.886 33 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.324 -15.762 -1.967 16.054 hybrid contribution -0.052 1.229 0.472 1.317 sum 2.272 -14.533 -1.495 14.786 Atomic orbital electron populations 1.70101 1.07779 1.27749 1.51533 1.25947 0.95747 1.03302 0.94638 0.85388 0.79032 0.78745 0.77794 1.18651 1.20294 1.20419 1.21651 0.93545 0.92319 1.50776 0.92220 1.18921 0.94295 0.92136 0.95231 1.21796 0.95644 0.88200 0.98922 1.60533 1.19973 1.01522 1.49781 1.21556 0.93527 0.87518 1.01308 1.23141 0.96965 0.95547 0.96853 1.21599 0.92179 0.86533 0.97238 1.86302 1.47390 1.40791 1.65131 1.23802 1.00751 0.96761 0.81581 1.89809 1.36946 1.81009 1.23888 1.23769 0.87526 0.96045 0.96210 0.92730 0.98345 0.99031 0.96485 0.91946 0.84460 0.94841 0.89768 0.92488 0.92391 0.75074 0.88697 0.88500 0.88584 0.90400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.45 13.29 21.45 0.28 -56.17 16 2 C 0.00 0.09 5.46 84.65 0.46 0.56 16 3 Si 0.97 44.02 29.54 68.60 2.03 46.05 16 4 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 5 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 6 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 7 C -0.54 -30.87 9.11 25.60 0.23 -30.64 16 8 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 9 C 0.03 1.66 5.23 29.85 0.16 1.82 16 10 C 0.08 3.41 5.62 86.30 0.49 3.89 16 11 N -0.69 -23.00 5.44 -513.86 -2.80 -25.79 16 12 C 0.09 2.47 5.28 86.30 0.46 2.93 16 13 C -0.12 -2.94 1.32 -51.94 -0.07 -3.01 16 14 C 0.10 2.21 6.51 71.98 0.47 2.68 16 15 O -0.59 -10.91 11.62 -148.98 -1.73 -12.64 16 16 C 0.05 1.06 7.82 63.85 0.50 1.56 16 17 O -0.40 -11.06 12.60 -148.98 -1.88 -12.93 16 18 C 0.04 1.02 7.74 63.85 0.49 1.51 16 19 H 0.26 14.96 8.31 -92.71 -0.77 14.18 16 20 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 21 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 22 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 23 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 24 H 0.34 11.20 8.73 -89.70 -0.78 10.42 16 25 H 0.03 0.97 7.95 -2.38 -0.02 0.95 16 26 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 27 H 0.06 1.40 7.44 -2.39 -0.02 1.39 16 28 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.40 4.06 9.12 -74.06 -0.68 3.38 16 30 H 0.09 1.82 8.13 -2.38 -0.02 1.81 16 31 H 0.10 1.98 7.47 -2.39 -0.02 1.96 16 32 H 0.10 2.27 7.14 -2.39 -0.02 2.25 16 33 H 0.08 1.94 8.13 -2.39 -0.02 1.92 16 Total: -1.00 -65.53 276.89 -1.26 -66.80 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: -0.36 Total: 13.39 kcal Atomic # 6 Polarization: -21.89 SS G_CDS: 3.19 Total: -18.70 kcal Atomic # 7 Polarization: -79.45 SS G_CDS: -2.51 Total: -81.96 kcal Atomic # 8 Polarization: -21.96 SS G_CDS: -3.61 Total: -25.57 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Total: -65.53 -1.26 -66.80 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717603398.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.455 kcal (2) G-P(sol) polarization free energy of solvation -65.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds