Wall clock time and date at job start Mon Mar 30 2020 02:20:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47240 * 2 1 4 4 C 1.50696 * 109.47215 * 239.99994 * 2 1 3 5 5 H 1.08005 * 119.99990 * 240.00459 * 4 2 1 6 6 C 1.37881 * 120.00144 * 59.99947 * 4 2 1 7 7 N 1.31509 * 119.99894 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 120.00087 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47005 * 60.00040 * 8 6 4 10 10 H 1.48491 * 109.46949 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.46859 * 299.99921 * 8 6 4 12 12 N 1.46906 * 109.47005 * 119.99870 * 2 1 3 13 13 C 1.46901 * 110.99793 * 58.95599 * 12 2 1 14 14 C 1.46898 * 110.99820 * 294.99916 * 12 2 1 15 15 C 1.53004 * 109.46619 * 189.99887 * 14 12 2 16 16 C 1.53044 * 113.15340 * 275.54552 * 15 14 12 17 17 S 1.81497 * 89.86287 * 211.87110 * 16 15 14 18 18 C 1.53049 * 113.14689 * 175.11884 * 15 14 12 19 19 H 1.08997 * 109.47240 * 180.02562 * 1 2 3 20 20 H 1.08998 * 109.47262 * 300.00203 * 1 2 3 21 21 H 1.09001 * 109.47097 * 60.00065 * 1 2 3 22 22 H 0.97000 * 120.00037 * 179.97438 * 7 6 4 23 23 H 1.09002 * 109.47401 * 59.99808 * 13 12 2 24 24 H 1.09001 * 109.46874 * 299.99821 * 13 12 2 25 25 H 1.09004 * 109.46970 * 179.97438 * 13 12 2 26 26 H 1.08994 * 109.47410 * 309.99936 * 14 12 2 27 27 H 1.08999 * 109.47216 * 70.00266 * 14 12 2 28 28 H 1.08999 * 112.49396 * 45.33704 * 15 14 12 29 29 H 1.08996 * 113.14925 * 327.11608 * 16 15 14 30 30 H 1.09002 * 113.14529 * 96.59548 * 16 15 14 31 31 H 1.08993 * 113.14726 * 263.40293 * 18 15 14 32 32 H 1.08998 * 113.15006 * 32.85529 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3214 -1.1204 -4.0079 9 1 1.8258 -2.5203 -4.0077 10 1 1.8270 -0.4199 -5.2204 11 1 3.8064 -1.1209 -4.0081 12 7 2.0197 -0.6925 1.1995 13 6 1.5283 -2.0761 1.2460 14 6 1.6487 0.0392 2.4181 15 6 2.3789 -0.5662 3.6186 16 6 1.6572 -1.7777 4.2135 17 16 2.2830 -1.3369 5.8591 18 6 2.1452 0.2080 4.9179 19 1 -0.3633 -1.0276 0.0005 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 0.7087 1.1612 -3.4844 23 1 1.8762 -2.6151 0.3647 24 1 0.4384 -2.0742 1.2639 25 1 1.9060 -2.5658 2.1436 26 1 1.9297 1.0870 2.3125 27 1 0.5722 -0.0345 2.5726 28 1 3.4332 -0.7530 3.4146 29 1 0.5721 -1.7108 4.1357 30 1 2.0441 -2.7289 3.8480 31 1 2.9406 0.9187 5.1421 32 1 1.1545 0.6588 4.9759 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000718164754.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:32 Heat of formation + Delta-G solvation = 26.229545 kcal Electronic energy + Delta-G solvation = -12995.545538 eV Core-core repulsion = 10890.259646 eV Total energy + Delta-G solvation = -2105.285891 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.25098 -35.55127 -32.49694 -28.79166 -27.38372 -25.99894 -25.15041 -23.60971 -20.38266 -19.22119 -16.32761 -16.26823 -15.71533 -15.06888 -14.10437 -14.00306 -13.48416 -12.97480 -12.84377 -12.55306 -12.33505 -11.54906 -11.44411 -11.22529 -10.95090 -10.88225 -10.70689 -10.43698 -10.38513 -10.15406 -10.02062 -9.54403 -8.88847 -8.40207 -7.77861 -7.18318 -6.02526 -4.06366 1.85149 2.00000 3.31748 3.36214 3.39050 4.35553 4.46453 4.77377 5.01769 5.29224 5.33329 5.36790 5.46354 5.58735 5.63989 5.93484 6.12689 6.18527 6.38974 6.45795 6.64649 6.79383 6.87660 7.09324 7.46066 7.69409 7.81033 8.09294 8.35337 8.57305 8.99260 9.58810 11.04587 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.068584 B = 0.006605 C = 0.006362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 408.160356 B = 4238.474639 C = 4400.391071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.210 3.790 3 H 0.039 0.961 4 C -0.501 4.501 5 H 0.062 0.938 6 C 0.058 3.942 7 N -0.895 5.895 8 Si 0.896 3.104 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.277 1.277 12 N -0.533 5.533 13 C 0.027 3.973 14 C 0.065 3.935 15 C -0.083 4.083 16 C -0.069 4.069 17 S -0.329 6.329 18 C -0.071 4.071 19 H 0.030 0.970 20 H 0.007 0.993 21 H 0.088 0.912 22 H 0.261 0.739 23 H 0.071 0.929 24 H 0.018 0.982 25 H 0.048 0.952 26 H 0.074 0.926 27 H 0.031 0.969 28 H 0.116 0.884 29 H 0.100 0.900 30 H 0.099 0.901 31 H 0.095 0.905 32 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.091 -2.035 10.462 10.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.104 3.896 3 H 0.057 0.943 4 C -0.539 4.539 5 H 0.080 0.920 6 C -0.143 4.143 7 N -0.534 5.534 8 Si 0.725 3.275 9 H -0.204 1.204 10 H -0.214 1.214 11 H -0.202 1.202 12 N -0.256 5.256 13 C -0.122 4.122 14 C -0.066 4.066 15 C -0.103 4.103 16 C -0.217 4.217 17 S -0.103 6.103 18 C -0.220 4.220 19 H 0.049 0.951 20 H 0.026 0.974 21 H 0.106 0.894 22 H 0.071 0.929 23 H 0.090 0.910 24 H 0.036 0.964 25 H 0.066 0.934 26 H 0.092 0.908 27 H 0.049 0.951 28 H 0.134 0.866 29 H 0.118 0.882 30 H 0.117 0.883 31 H 0.114 0.886 32 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 0.910 -2.492 11.609 11.909 hybrid contribution -1.042 0.015 -1.748 2.036 sum -0.132 -2.478 9.861 10.168 Atomic orbital electron populations 1.22406 1.00907 0.99339 1.00515 1.19312 0.89713 0.94565 0.85987 0.94277 1.21084 1.30646 1.12524 0.89694 0.91975 1.24926 0.95215 0.95126 0.99008 1.69869 1.36985 1.23062 1.23521 0.86585 0.79247 0.79594 0.82123 1.20387 1.21404 1.20220 1.62354 1.59394 1.01951 1.01926 1.22436 0.97174 0.91387 1.01214 1.22020 0.96268 0.98371 0.89921 1.22575 1.02175 0.92054 0.93490 1.24683 1.03321 1.03625 0.90068 1.88859 1.86140 1.10913 1.24342 1.24344 1.05667 0.97383 0.94640 0.95090 0.97420 0.89367 0.92949 0.90984 0.96398 0.93371 0.90751 0.95088 0.86563 0.88177 0.88257 0.88635 0.88037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.02 8.28 37.16 0.31 -3.72 16 2 C 0.21 5.09 2.34 -68.86 -0.16 4.93 16 3 H 0.04 1.04 8.03 -51.93 -0.42 0.63 16 4 C -0.50 -13.35 7.94 -34.44 -0.27 -13.62 16 5 H 0.06 1.66 6.75 -52.48 -0.35 1.30 16 6 C 0.06 1.58 5.30 -17.82 -0.09 1.48 16 7 N -0.90 -25.05 11.32 55.43 0.63 -24.42 16 8 Si 0.90 21.02 29.54 -169.99 -5.02 16.00 16 9 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 10 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 12 N -0.53 -10.70 4.74 -236.28 -1.12 -11.82 16 13 C 0.03 0.49 8.39 60.07 0.50 0.99 16 14 C 0.07 1.06 4.28 -3.82 -0.02 1.05 16 15 C -0.08 -1.11 3.22 -90.57 -0.29 -1.41 16 16 C -0.07 -0.88 5.92 37.18 0.22 -0.66 16 17 S -0.33 -4.45 24.80 -107.50 -2.67 -7.12 16 18 C -0.07 -0.84 7.50 37.18 0.28 -0.56 16 19 H 0.03 0.70 6.38 -51.93 -0.33 0.37 16 20 H 0.01 0.15 6.75 -51.93 -0.35 -0.21 16 21 H 0.09 2.30 6.07 -51.93 -0.32 1.98 16 22 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 23 H 0.07 1.45 6.53 -51.93 -0.34 1.11 16 24 H 0.02 0.33 6.28 -51.93 -0.33 0.00 16 25 H 0.05 0.74 4.63 -51.93 -0.24 0.50 16 26 H 0.07 1.22 8.00 -51.93 -0.42 0.81 16 27 H 0.03 0.51 6.69 -51.93 -0.35 0.16 16 28 H 0.12 1.66 8.14 -51.93 -0.42 1.24 16 29 H 0.10 1.23 7.95 -51.93 -0.41 0.82 16 30 H 0.10 1.25 6.63 -51.93 -0.34 0.90 16 31 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.10 1.10 8.12 -51.93 -0.42 0.68 16 LS Contribution 258.28 15.07 3.89 3.89 Total: -1.00 -27.45 258.28 -8.41 -35.86 By element: Atomic # 1 Polarization: 3.73 SS G_CDS: -4.60 Total: -0.87 kcal Atomic # 6 Polarization: -12.00 SS G_CDS: 0.47 Total: -11.53 kcal Atomic # 7 Polarization: -35.74 SS G_CDS: -0.49 Total: -36.24 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Atomic # 16 Polarization: -4.45 SS G_CDS: -2.67 Total: -7.12 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -27.45 -8.41 -35.86 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718164754.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.092 kcal (2) G-P(sol) polarization free energy of solvation -27.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds