Wall clock time and date at job start Mon Mar 30 2020 02:20:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47240 * 2 1 4 4 C 1.50696 * 109.47215 * 239.99994 * 2 1 3 5 5 H 1.08005 * 119.99990 * 240.00459 * 4 2 1 6 6 C 1.37881 * 120.00144 * 59.99947 * 4 2 1 7 7 N 1.31509 * 119.99894 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 120.00087 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47005 * 60.00040 * 8 6 4 10 10 H 1.48491 * 109.46949 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.46859 * 299.99921 * 8 6 4 12 12 N 1.46906 * 109.47005 * 119.99870 * 2 1 3 13 13 C 1.46901 * 110.99793 * 58.95599 * 12 2 1 14 14 C 1.46898 * 110.99820 * 294.99916 * 12 2 1 15 15 C 1.53004 * 109.46619 * 189.99887 * 14 12 2 16 16 C 1.53044 * 113.15340 * 275.54552 * 15 14 12 17 17 S 1.81497 * 89.86287 * 211.87110 * 16 15 14 18 18 C 1.53049 * 113.14689 * 175.11884 * 15 14 12 19 19 H 1.08997 * 109.47240 * 180.02562 * 1 2 3 20 20 H 1.08998 * 109.47262 * 300.00203 * 1 2 3 21 21 H 1.09001 * 109.47097 * 60.00065 * 1 2 3 22 22 H 0.97000 * 120.00037 * 179.97438 * 7 6 4 23 23 H 1.09002 * 109.47401 * 59.99808 * 13 12 2 24 24 H 1.09001 * 109.46874 * 299.99821 * 13 12 2 25 25 H 1.09004 * 109.46970 * 179.97438 * 13 12 2 26 26 H 1.08994 * 109.47410 * 309.99936 * 14 12 2 27 27 H 1.08999 * 109.47216 * 70.00266 * 14 12 2 28 28 H 1.08999 * 112.49396 * 45.33704 * 15 14 12 29 29 H 1.08996 * 113.14925 * 327.11608 * 16 15 14 30 30 H 1.09002 * 113.14529 * 96.59548 * 16 15 14 31 31 H 1.08993 * 113.14726 * 263.40293 * 18 15 14 32 32 H 1.08998 * 113.15006 * 32.85529 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3214 -1.1204 -4.0079 9 1 1.8258 -2.5203 -4.0077 10 1 1.8270 -0.4199 -5.2204 11 1 3.8064 -1.1209 -4.0081 12 7 2.0197 -0.6925 1.1995 13 6 1.5283 -2.0761 1.2460 14 6 1.6487 0.0392 2.4181 15 6 2.3789 -0.5662 3.6186 16 6 1.6572 -1.7777 4.2135 17 16 2.2830 -1.3369 5.8591 18 6 2.1452 0.2080 4.9179 19 1 -0.3633 -1.0276 0.0005 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 0.7087 1.1612 -3.4844 23 1 1.8762 -2.6151 0.3647 24 1 0.4384 -2.0742 1.2639 25 1 1.9060 -2.5658 2.1436 26 1 1.9297 1.0870 2.3125 27 1 0.5722 -0.0345 2.5726 28 1 3.4332 -0.7530 3.4146 29 1 0.5721 -1.7108 4.1357 30 1 2.0441 -2.7289 3.8480 31 1 2.9406 0.9187 5.1421 32 1 1.1545 0.6588 4.9759 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000718164754.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:32 Heat of formation + Delta-G solvation = 9.694499 kcal Electronic energy + Delta-G solvation = -12996.262551 eV Core-core repulsion = 10890.259646 eV Total energy + Delta-G solvation = -2106.002905 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.65757 -36.99062 -34.40844 -30.59458 -28.73901 -27.32366 -26.87580 -25.20401 -21.74815 -20.80614 -18.18971 -17.39238 -17.08954 -16.78537 -15.75893 -15.40734 -15.04792 -14.37324 -14.04496 -13.89748 -13.82507 -13.27694 -12.94695 -12.65812 -12.59981 -12.55037 -12.40611 -12.03113 -11.98166 -11.86549 -11.42748 -10.99218 -10.69992 -10.45825 -8.89143 -8.72978 -8.07835 -6.18041 0.85768 0.97631 1.45269 1.46271 1.53648 2.45386 3.21633 3.25643 3.56162 3.91687 4.12358 4.34541 4.40252 4.47664 4.59349 4.68159 4.75392 4.78548 4.84420 4.93966 5.01208 5.19953 5.26490 5.29475 5.60171 5.75669 5.84555 6.24345 6.52318 6.80721 6.96224 7.51278 8.97939 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.068584 B = 0.006605 C = 0.006362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 408.160356 B = 4238.474639 C = 4400.391071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.214 3.786 3 H 0.008 0.992 4 C -0.515 4.515 5 H 0.057 0.943 6 C 0.011 3.989 7 N -0.921 5.921 8 Si 0.956 3.044 9 H -0.272 1.272 10 H -0.286 1.286 11 H -0.274 1.274 12 N -0.543 5.543 13 C 0.032 3.968 14 C 0.069 3.931 15 C -0.076 4.076 16 C -0.062 4.062 17 S -0.357 6.357 18 C -0.057 4.057 19 H 0.031 0.969 20 H 0.029 0.971 21 H 0.058 0.942 22 H 0.260 0.740 23 H 0.050 0.950 24 H 0.017 0.983 25 H 0.080 0.920 26 H 0.070 0.930 27 H 0.037 0.963 28 H 0.110 0.890 29 H 0.109 0.891 30 H 0.102 0.898 31 H 0.108 0.892 32 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.137 -2.624 11.268 11.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.107 3.893 3 H 0.026 0.974 4 C -0.553 4.553 5 H 0.075 0.925 6 C -0.187 4.187 7 N -0.561 5.561 8 Si 0.782 3.218 9 H -0.197 1.197 10 H -0.212 1.212 11 H -0.199 1.199 12 N -0.267 5.267 13 C -0.117 4.117 14 C -0.062 4.062 15 C -0.097 4.097 16 C -0.210 4.210 17 S -0.131 6.131 18 C -0.206 4.206 19 H 0.050 0.950 20 H 0.048 0.952 21 H 0.077 0.923 22 H 0.069 0.931 23 H 0.068 0.932 24 H 0.036 0.964 25 H 0.098 0.902 26 H 0.088 0.912 27 H 0.055 0.945 28 H 0.128 0.872 29 H 0.128 0.872 30 H 0.121 0.879 31 H 0.127 0.873 32 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 0.962 -3.091 12.438 12.852 hybrid contribution -1.046 0.213 -1.941 2.215 sum -0.084 -2.878 10.497 10.884 Atomic orbital electron populations 1.22201 1.00340 0.99166 1.00093 1.19060 0.89998 0.93012 0.87260 0.97426 1.21396 1.30480 1.12444 0.91017 0.92490 1.25659 0.95481 0.95818 1.01759 1.69998 1.37937 1.24215 1.23965 0.85648 0.78694 0.78693 0.78800 1.19737 1.21196 1.19911 1.62220 1.59755 1.02734 1.01962 1.22414 0.97125 0.90356 1.01758 1.22040 0.96941 0.98010 0.89193 1.22434 1.01461 0.92891 0.92892 1.24665 1.03761 1.03330 0.89235 1.89041 1.86346 1.12705 1.24960 1.24335 1.07052 0.96658 0.92520 0.94975 0.95241 0.92293 0.93067 0.93150 0.96418 0.90190 0.91171 0.94518 0.87221 0.87234 0.87932 0.87337 0.86567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.35 8.28 71.98 0.60 -6.76 16 2 C 0.21 10.38 2.34 44.17 0.10 10.48 16 3 H 0.01 0.42 8.03 -2.39 -0.02 0.40 16 4 C -0.51 -27.58 7.94 25.60 0.20 -27.37 16 5 H 0.06 3.04 6.75 -2.91 -0.02 3.03 16 6 C 0.01 0.61 5.30 84.66 0.45 1.06 16 7 N -0.92 -52.13 11.32 21.45 0.24 -51.89 16 8 Si 0.96 43.09 29.54 68.60 2.03 45.12 16 9 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 10 H -0.29 -12.73 7.11 99.48 0.71 -12.02 16 11 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 12 N -0.54 -21.29 4.74 -901.46 -4.27 -25.57 16 13 C 0.03 1.12 8.39 127.69 1.07 2.19 16 14 C 0.07 2.11 4.28 86.30 0.37 2.48 16 15 C -0.08 -1.88 3.22 -10.76 -0.03 -1.91 16 16 C -0.06 -1.42 5.92 72.00 0.43 -0.99 16 17 S -0.36 -8.85 24.80 -56.49 -1.40 -10.25 16 18 C -0.06 -1.19 7.50 72.00 0.54 -0.65 16 19 H 0.03 1.43 6.38 -2.39 -0.02 1.42 16 20 H 0.03 1.19 6.75 -2.39 -0.02 1.17 16 21 H 0.06 3.09 6.07 -2.39 -0.01 3.08 16 22 H 0.26 14.12 8.31 -92.71 -0.77 13.35 16 23 H 0.05 1.98 6.53 -2.39 -0.02 1.97 16 24 H 0.02 0.62 6.28 -2.39 -0.01 0.60 16 25 H 0.08 2.28 4.63 -2.38 -0.01 2.27 16 26 H 0.07 2.21 8.00 -2.39 -0.02 2.20 16 27 H 0.04 1.10 6.69 -2.39 -0.02 1.08 16 28 H 0.11 2.90 8.14 -2.39 -0.02 2.89 16 29 H 0.11 2.34 7.95 -2.39 -0.02 2.32 16 30 H 0.10 2.28 6.63 -2.39 -0.02 2.27 16 31 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.12 2.13 8.12 -2.39 -0.02 2.11 16 Total: -1.00 -57.99 258.28 1.41 -56.58 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: 1.10 Total: 7.48 kcal Atomic # 6 Polarization: -25.20 SS G_CDS: 3.72 Total: -21.47 kcal Atomic # 7 Polarization: -73.43 SS G_CDS: -4.03 Total: -77.46 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Atomic # 16 Polarization: -8.85 SS G_CDS: -1.40 Total: -10.25 kcal Total: -57.99 1.41 -56.58 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718164754.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.273 kcal (2) G-P(sol) polarization free energy of solvation -57.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.578 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds