Wall clock time and date at job start Mon Mar 30 2020 02:28:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36935 * 120.00327 * 2 1 4 4 H 1.07994 * 119.99803 * 157.70383 * 3 2 1 5 5 C 1.38812 * 119.99746 * 337.43502 * 3 2 1 6 6 N 1.31614 * 120.00185 * 348.27753 * 5 3 2 7 7 Si 1.86795 * 119.99907 * 168.29048 * 5 3 2 8 8 H 1.48499 * 109.47322 * 359.97438 * 7 5 3 9 9 H 1.48497 * 109.47553 * 119.99440 * 7 5 3 10 10 H 1.48503 * 109.46836 * 239.99698 * 7 5 3 11 11 C 1.46495 * 119.99426 * 179.97438 * 2 1 3 12 12 C 1.53000 * 109.47586 * 270.00325 * 11 2 1 13 13 H 1.08997 * 109.57590 * 300.25772 * 12 11 2 14 14 C 1.53095 * 109.57688 * 180.02562 * 12 11 2 15 15 C 1.52582 * 109.95588 * 177.16910 * 14 12 11 16 16 C 1.52574 * 110.72835 * 70.67474 * 15 14 12 17 17 C 1.53099 * 109.95510 * 289.32591 * 16 15 14 18 18 S 1.81747 * 108.84175 * 63.02640 * 17 16 15 19 19 H 1.09006 * 109.46858 * 84.81738 * 1 2 3 20 20 H 1.09001 * 109.47776 * 204.82140 * 1 2 3 21 21 H 1.08998 * 109.47226 * 324.82520 * 1 2 3 22 22 H 0.96998 * 120.00509 * 180.02562 * 6 5 3 23 23 H 1.09002 * 109.47386 * 30.00853 * 11 2 1 24 24 H 1.09003 * 109.47174 * 150.00264 * 11 2 1 25 25 H 1.09000 * 109.39054 * 297.31679 * 14 12 11 26 26 H 1.09005 * 109.39219 * 57.12073 * 14 12 11 27 27 H 1.09003 * 109.22579 * 191.00102 * 15 14 12 28 28 H 1.09004 * 109.22274 * 310.35058 * 15 14 12 29 29 H 1.09004 * 109.38893 * 49.47479 * 16 15 14 30 30 H 1.08997 * 109.39226 * 169.27484 * 16 15 14 31 31 H 1.08999 * 109.57281 * 182.82674 * 17 16 15 32 32 H 1.08997 * 109.57748 * 303.08827 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1691 1.2207 0.3548 5 6 1.5354 2.3420 -0.4613 6 7 0.3916 2.2663 -1.1080 7 14 2.3323 4.0052 -0.1646 8 1 3.6035 3.8192 0.5802 9 1 2.6130 4.6592 -1.4679 10 1 1.4137 4.8594 0.6303 11 6 2.1974 -1.2688 0.0006 12 6 2.4523 -1.7100 1.4432 13 1 3.0375 -0.9492 1.9598 14 6 3.2182 -3.0356 1.4465 15 6 3.5386 -3.4483 2.8801 16 6 2.2720 -3.8785 3.6140 17 6 1.3860 -2.6598 3.8856 18 16 0.8654 -1.9468 2.2970 19 1 -0.3633 0.0928 -1.0235 20 1 -0.3635 -0.9327 0.4314 21 1 -0.3633 0.8400 0.5920 22 1 -0.0375 3.0741 -1.4307 23 1 1.6083 -2.0286 -0.5131 24 1 3.1498 -1.1387 -0.5133 25 1 2.6088 -3.8068 0.9755 26 1 4.1476 -2.9180 0.8891 27 1 4.2445 -4.2788 2.8653 28 1 3.9884 -2.6051 3.4043 29 1 1.7244 -4.5947 3.0014 30 1 2.5432 -4.3452 4.5609 31 1 0.5077 -2.9663 4.4537 32 1 1.9483 -1.9189 4.4539 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000718326257.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:21 Heat of formation + Delta-G solvation = -11.229886 kcal Electronic energy + Delta-G solvation = -12988.764040 eV Core-core repulsion = 10881.853786 eV Total energy + Delta-G solvation = -2106.910254 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.35633 -37.07182 -33.98702 -32.04138 -29.12058 -27.87783 -26.10345 -23.67610 -22.09967 -21.46608 -18.81811 -17.57998 -16.91212 -15.93654 -15.90307 -15.47410 -14.97316 -14.67129 -14.31290 -14.16185 -13.58392 -13.23461 -12.95823 -12.79717 -12.55052 -12.38044 -12.19539 -12.09624 -11.87049 -11.76250 -11.72333 -11.18221 -10.62861 -10.31171 -8.77263 -8.43572 -7.80414 -5.30213 1.01103 1.44664 1.46164 1.56384 1.87918 2.50711 3.31513 3.59693 3.88275 3.93694 4.05821 4.24670 4.32765 4.42346 4.52320 4.74193 4.82995 4.84975 4.97756 4.99499 5.06892 5.14832 5.17217 5.20059 5.40699 5.43391 5.62304 5.71735 6.32982 7.15886 7.87362 8.32818 9.22495 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.046400 B = 0.008493 C = 0.008197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.308452 B = 3295.850960 C = 3415.041357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.191 3.809 2 N -0.612 5.612 3 C -0.258 4.258 4 H 0.070 0.930 5 C -0.056 4.056 6 N -0.941 5.941 7 Si 0.969 3.031 8 H -0.266 1.266 9 H -0.290 1.290 10 H -0.293 1.293 11 C 0.164 3.836 12 C -0.049 4.049 13 H 0.060 0.940 14 C -0.110 4.110 15 C -0.124 4.124 16 C -0.113 4.113 17 C -0.087 4.087 18 S -0.302 6.302 19 H -0.002 1.002 20 H 0.032 0.968 21 H 0.009 0.991 22 H 0.247 0.753 23 H 0.050 0.950 24 H 0.063 0.937 25 H 0.075 0.925 26 H 0.081 0.919 27 H 0.091 0.909 28 H 0.054 0.946 29 H 0.073 0.927 30 H 0.091 0.909 31 H 0.108 0.892 32 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.611 -12.595 8.789 16.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 N -0.334 5.334 3 C -0.388 4.388 4 H 0.088 0.912 5 C -0.251 4.251 6 N -0.588 5.588 7 Si 0.798 3.202 8 H -0.190 1.190 9 H -0.217 1.217 10 H -0.220 1.220 11 C 0.037 3.963 12 C -0.180 4.180 13 H 0.079 0.921 14 C -0.149 4.149 15 C -0.162 4.162 16 C -0.151 4.151 17 C -0.235 4.235 18 S -0.076 6.076 19 H 0.016 0.984 20 H 0.050 0.950 21 H 0.028 0.972 22 H 0.056 0.944 23 H 0.068 0.932 24 H 0.082 0.918 25 H 0.094 0.906 26 H 0.099 0.901 27 H 0.109 0.891 28 H 0.073 0.927 29 H 0.092 0.908 30 H 0.110 0.890 31 H 0.126 0.874 32 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 4.471 -12.226 8.372 15.477 hybrid contribution 1.122 1.144 0.339 1.638 sum 5.593 -11.081 8.711 15.165 Atomic orbital electron populations 1.20436 0.82794 0.95688 0.96492 1.44064 1.02046 1.01480 1.85858 1.19521 0.97926 0.86800 1.34560 0.91235 1.25806 0.98521 1.01931 0.98838 1.70257 1.19812 1.27348 1.41391 0.85167 0.77990 0.79997 0.77080 1.18998 1.21701 1.22047 1.20759 0.96374 0.87161 0.92010 1.24015 0.93973 0.99864 1.00173 0.92126 1.21733 1.00283 0.94542 0.98384 1.21511 0.98100 1.01905 0.94657 1.21674 0.95598 0.96058 1.01806 1.23563 1.03755 1.00280 0.95937 1.87405 1.17598 1.82935 1.19663 0.98390 0.94971 0.97186 0.94372 0.93178 0.91843 0.90584 0.90057 0.89087 0.92672 0.90839 0.89025 0.87375 0.90799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 10.26 8.29 127.77 1.06 11.32 16 2 N -0.61 -32.08 2.77 -726.94 -2.01 -34.09 16 3 C -0.26 -14.60 9.67 84.03 0.81 -13.79 16 4 H 0.07 3.80 7.86 -2.91 -0.02 3.78 16 5 C -0.06 -3.28 5.13 84.86 0.44 -2.84 16 6 N -0.94 -58.00 10.61 21.65 0.23 -57.77 16 7 Si 0.97 46.49 29.57 68.60 2.03 48.52 16 8 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 9 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 10 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 11 C 0.16 6.84 5.21 86.38 0.45 7.29 16 12 C -0.05 -1.70 2.80 30.63 0.09 -1.62 16 13 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 14 C -0.11 -2.77 5.04 30.49 0.15 -2.62 16 15 C -0.12 -2.53 5.61 30.31 0.17 -2.36 16 16 C -0.11 -2.21 5.75 30.49 0.18 -2.03 16 17 C -0.09 -2.20 6.45 72.02 0.46 -1.74 16 18 S -0.30 -10.79 18.85 -56.49 -1.07 -11.86 16 19 H 0.00 -0.13 7.35 -2.38 -0.02 -0.14 16 20 H 0.03 1.55 6.00 -2.39 -0.01 1.54 16 21 H 0.01 0.56 7.28 -2.39 -0.02 0.54 16 22 H 0.25 14.73 8.31 -92.71 -0.77 13.95 16 23 H 0.05 2.01 8.07 -2.39 -0.02 1.99 16 24 H 0.06 2.56 8.04 -2.39 -0.02 2.54 16 25 H 0.08 1.87 8.06 -2.39 -0.02 1.85 16 26 H 0.08 1.87 8.14 -2.38 -0.02 1.85 16 27 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.05 1.21 8.08 -2.38 -0.02 1.19 16 29 H 0.07 1.47 8.06 -2.39 -0.02 1.45 16 30 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.11 2.41 8.14 -2.39 -0.02 2.39 16 32 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 Total: -1.00 -65.60 263.04 4.05 -61.55 By element: Atomic # 1 Polarization: 0.99 SS G_CDS: 1.07 Total: 2.05 kcal Atomic # 6 Polarization: -12.21 SS G_CDS: 3.81 Total: -8.40 kcal Atomic # 7 Polarization: -90.08 SS G_CDS: -1.78 Total: -91.87 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 2.03 Total: 48.52 kcal Atomic # 16 Polarization: -10.79 SS G_CDS: -1.07 Total: -11.86 kcal Total: -65.60 4.05 -61.55 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718326257.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.319 kcal (2) G-P(sol) polarization free energy of solvation -65.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds