Wall clock time and date at job start Mon Mar 30 2020 02:40:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 119.99787 * 2 1 4 4 H 1.48503 * 109.46941 * 239.99456 * 3 2 1 5 5 H 1.48500 * 109.47359 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47295 * 119.99785 * 3 2 1 7 7 C 1.37875 * 119.99798 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99630 * 180.02562 * 7 2 1 9 9 C 1.50692 * 120.00476 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47452 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47290 * 179.97438 * 10 9 7 12 12 C 1.53006 * 109.47124 * 180.02562 * 11 10 9 13 13 O 1.42898 * 109.47207 * 180.02562 * 12 11 10 14 14 C 1.42893 * 114.00130 * 180.02562 * 13 12 11 15 15 H 1.08999 * 110.39768 * 329.01794 * 14 13 12 16 16 C 1.54303 * 110.55202 * 206.51047 * 14 13 12 17 17 N 1.48218 * 105.05954 * 240.42322 * 16 14 13 18 18 O 1.48079 * 105.42238 * 24.30881 * 17 16 14 19 19 C 1.44614 * 104.46009 * 319.59901 * 18 17 16 20 20 H 0.97001 * 120.00018 * 0.02562 * 1 2 3 21 21 H 1.08999 * 109.47120 * 59.99872 * 9 7 2 22 22 H 1.09000 * 109.47280 * 300.00033 * 9 7 2 23 23 H 1.09008 * 109.47255 * 60.00334 * 10 9 7 24 24 H 1.09000 * 109.47197 * 300.00442 * 10 9 7 25 25 H 1.08999 * 109.47009 * 60.00398 * 11 10 9 26 26 H 1.08996 * 109.47571 * 299.99962 * 11 10 9 27 27 H 1.08999 * 109.46874 * 60.00290 * 12 11 10 28 28 H 1.09000 * 109.47259 * 300.00614 * 12 11 10 29 29 H 1.08999 * 110.32862 * 359.31760 * 16 14 13 30 30 H 1.08999 * 110.32711 * 121.53351 * 16 14 13 31 31 H 1.00899 * 111.00427 * 264.05224 * 17 16 14 32 32 H 1.09002 * 110.53365 * 280.32759 * 19 18 17 33 33 H 1.09000 * 110.53150 * 157.69921 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4803 -4.9871 0.0012 12 6 2.4746 -6.1500 0.0018 13 8 1.7602 -7.3876 0.0018 14 6 2.6001 -8.5436 0.0030 15 1 3.5324 -8.3363 -0.5223 16 6 1.8730 -9.7421 -0.6420 17 7 1.8095 -10.7719 0.4221 18 8 1.8963 -10.0257 1.6981 19 6 2.8866 -9.0012 1.4506 20 1 -0.4850 0.8400 -0.0004 21 1 0.6248 -2.5571 -0.8897 22 1 0.6241 -2.5567 0.8903 23 1 2.8720 -3.6043 0.8906 24 1 2.8720 -3.6043 -0.8894 25 1 0.8534 -5.0451 -0.8886 26 1 0.8540 -5.0446 0.8913 27 1 3.1012 -6.0918 0.8918 28 1 3.1014 -6.0927 -0.8881 29 1 0.8681 -9.4540 -0.9504 30 1 2.4398 -10.1141 -1.4954 31 1 2.5702 -11.4291 0.3353 32 1 3.8921 -9.4145 1.5291 33 1 2.7601 -8.1713 2.1459 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000722481568.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:35 Heat of formation + Delta-G solvation = -59.502819 kcal Electronic energy + Delta-G solvation = -14055.572392 eV Core-core repulsion = 11503.815996 eV Total energy + Delta-G solvation = -2551.756397 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.55378 -37.18616 -34.61227 -32.53132 -32.03974 -29.80553 -28.38552 -25.01630 -24.33114 -21.78106 -21.64179 -20.05574 -17.62572 -17.08174 -16.24863 -15.91758 -15.68111 -15.33114 -14.47403 -14.10875 -13.62709 -13.27940 -12.77637 -12.42460 -12.28926 -12.03753 -11.63050 -11.35657 -11.14488 -10.81188 -10.59138 -10.57139 -10.43840 -9.73828 -9.67366 -9.52941 -9.33113 -9.06989 -8.34206 -5.99140 -4.02016 2.76209 3.33058 3.37522 3.39238 3.43920 3.92910 4.28722 4.45850 4.47411 4.82133 4.85880 5.09588 5.24733 5.35309 5.36480 5.38714 5.53788 5.66396 6.03709 6.04790 6.11379 6.41674 6.51700 6.73514 6.87438 7.04119 7.22093 7.68078 7.82907 8.00969 8.42785 9.05015 9.61890 11.12179 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.090732 B = 0.004047 C = 0.004011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 308.526729 B = 6917.710544 C = 6978.724739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.523 4.523 8 H 0.054 0.946 9 C 0.021 3.979 10 C -0.107 4.107 11 C -0.117 4.117 12 C 0.059 3.941 13 O -0.368 6.368 14 C 0.045 3.955 15 H 0.078 0.922 16 C 0.013 3.987 17 N -0.480 5.480 18 O -0.208 6.208 19 C -0.015 4.015 20 H 0.261 0.739 21 H 0.017 0.983 22 H 0.017 0.983 23 H 0.048 0.952 24 H 0.048 0.952 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.047 0.953 28 H 0.048 0.952 29 H 0.112 0.888 30 H 0.090 0.910 31 H 0.338 0.662 32 H 0.068 0.932 33 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.443 -18.182 -1.012 19.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.561 4.561 8 H 0.072 0.928 9 C -0.016 4.016 10 C -0.145 4.145 11 C -0.154 4.154 12 C -0.017 4.017 13 O -0.287 6.287 14 C -0.016 4.016 15 H 0.096 0.904 16 C -0.117 4.117 17 N -0.145 5.145 18 O -0.218 6.218 19 C -0.094 4.094 20 H 0.071 0.929 21 H 0.035 0.965 22 H 0.035 0.965 23 H 0.067 0.933 24 H 0.067 0.933 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.065 0.935 28 H 0.067 0.933 29 H 0.130 0.870 30 H 0.108 0.892 31 H 0.152 0.848 32 H 0.086 0.914 33 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 6.206 -18.231 -0.812 19.276 hybrid contribution 1.940 1.356 -0.196 2.375 sum 8.146 -16.875 -1.008 18.766 Atomic orbital electron populations 1.69958 1.06059 1.26723 1.50689 1.25033 0.94855 0.99256 0.95339 0.86653 0.79576 0.83154 0.78575 1.20269 1.21259 1.20255 1.21223 0.92962 0.91155 1.50789 0.92793 1.19086 0.93981 0.91132 0.97396 1.21582 0.99208 0.93429 1.00277 1.21652 0.98045 0.92724 1.03006 1.22846 0.95642 0.83454 0.99756 1.88053 1.32969 1.13057 1.94602 1.24083 0.94429 0.88565 0.94527 0.90379 1.23656 1.04106 0.90045 0.93883 1.69036 1.45153 1.08253 0.92045 1.92273 1.59671 1.45103 1.24785 1.24503 0.93043 0.93832 0.98009 0.92918 0.96505 0.96477 0.93334 0.93333 0.91537 0.91507 0.93492 0.93347 0.87021 0.89223 0.84764 0.91390 0.87300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.24 13.29 55.43 0.74 -26.50 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.52 -14.96 9.11 -34.45 -0.31 -15.28 16 8 H 0.05 1.48 7.74 -52.48 -0.41 1.08 16 9 C 0.02 0.55 4.97 -27.89 -0.14 0.41 16 10 C -0.11 -2.19 5.15 -26.73 -0.14 -2.33 16 11 C -0.12 -2.03 5.58 -26.73 -0.15 -2.18 16 12 C 0.06 0.83 5.80 37.16 0.22 1.05 16 13 O -0.37 -5.25 9.97 -35.23 -0.35 -5.60 16 14 C 0.04 0.47 3.55 -25.26 -0.09 0.38 16 15 H 0.08 0.65 7.85 -51.93 -0.41 0.25 16 16 C 0.01 0.12 7.64 -2.41 -0.02 0.10 16 17 N -0.48 -4.93 8.44 -8.95 -0.08 -5.01 16 18 O -0.21 -2.72 12.78 -14.95 -0.19 -2.91 16 19 C -0.01 -0.15 7.64 37.95 0.29 0.14 16 20 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 21 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 22 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 23 H 0.05 0.96 8.14 -51.92 -0.42 0.54 16 24 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 25 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 26 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.05 0.62 8.10 -51.93 -0.42 0.20 16 29 H 0.11 1.21 7.99 -51.93 -0.41 0.80 16 30 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.34 2.39 9.09 -39.29 -0.36 2.03 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.11 1.20 8.08 -51.93 -0.42 0.78 16 LS Contribution 280.69 15.07 4.23 4.23 Total: -1.00 -32.26 280.69 -6.48 -38.74 By element: Atomic # 1 Polarization: 1.86 SS G_CDS: -5.37 Total: -3.51 kcal Atomic # 6 Polarization: -15.72 SS G_CDS: -0.44 Total: -16.16 kcal Atomic # 7 Polarization: -32.17 SS G_CDS: 0.66 Total: -31.51 kcal Atomic # 8 Polarization: -7.97 SS G_CDS: -0.54 Total: -8.51 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -32.26 -6.48 -38.74 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722481568.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.762 kcal (2) G-P(sol) polarization free energy of solvation -32.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds