Wall clock time and date at job start Mon Mar 30 2020 02:40:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 119.99787 * 2 1 4 4 H 1.48503 * 109.46941 * 239.99456 * 3 2 1 5 5 H 1.48500 * 109.47359 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47295 * 119.99785 * 3 2 1 7 7 C 1.37875 * 119.99798 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99630 * 180.02562 * 7 2 1 9 9 C 1.50692 * 120.00476 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47452 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47290 * 179.97438 * 10 9 7 12 12 C 1.53006 * 109.47124 * 180.02562 * 11 10 9 13 13 O 1.42898 * 109.47207 * 180.02562 * 12 11 10 14 14 C 1.42893 * 114.00130 * 180.02562 * 13 12 11 15 15 H 1.08999 * 110.39768 * 329.01794 * 14 13 12 16 16 C 1.54303 * 110.55202 * 206.51047 * 14 13 12 17 17 N 1.48218 * 105.05954 * 240.42322 * 16 14 13 18 18 O 1.48079 * 105.42238 * 24.30881 * 17 16 14 19 19 C 1.44614 * 104.46009 * 319.59901 * 18 17 16 20 20 H 0.97001 * 120.00018 * 0.02562 * 1 2 3 21 21 H 1.08999 * 109.47120 * 59.99872 * 9 7 2 22 22 H 1.09000 * 109.47280 * 300.00033 * 9 7 2 23 23 H 1.09008 * 109.47255 * 60.00334 * 10 9 7 24 24 H 1.09000 * 109.47197 * 300.00442 * 10 9 7 25 25 H 1.08999 * 109.47009 * 60.00398 * 11 10 9 26 26 H 1.08996 * 109.47571 * 299.99962 * 11 10 9 27 27 H 1.08999 * 109.46874 * 60.00290 * 12 11 10 28 28 H 1.09000 * 109.47259 * 300.00614 * 12 11 10 29 29 H 1.08999 * 110.32862 * 359.31760 * 16 14 13 30 30 H 1.08999 * 110.32711 * 121.53351 * 16 14 13 31 31 H 1.00899 * 111.00427 * 264.05224 * 17 16 14 32 32 H 1.09002 * 110.53365 * 280.32759 * 19 18 17 33 33 H 1.09000 * 110.53150 * 157.69921 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4803 -4.9871 0.0012 12 6 2.4746 -6.1500 0.0018 13 8 1.7602 -7.3876 0.0018 14 6 2.6001 -8.5436 0.0030 15 1 3.5324 -8.3363 -0.5223 16 6 1.8730 -9.7421 -0.6420 17 7 1.8095 -10.7719 0.4221 18 8 1.8963 -10.0257 1.6981 19 6 2.8866 -9.0012 1.4506 20 1 -0.4850 0.8400 -0.0004 21 1 0.6248 -2.5571 -0.8897 22 1 0.6241 -2.5567 0.8903 23 1 2.8720 -3.6043 0.8906 24 1 2.8720 -3.6043 -0.8894 25 1 0.8534 -5.0451 -0.8886 26 1 0.8540 -5.0446 0.8913 27 1 3.1012 -6.0918 0.8918 28 1 3.1014 -6.0927 -0.8881 29 1 0.8681 -9.4540 -0.9504 30 1 2.4398 -10.1141 -1.4954 31 1 2.5702 -11.4291 0.3353 32 1 3.8921 -9.4145 1.5291 33 1 2.7601 -8.1713 2.1459 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000722481568.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:35 Heat of formation + Delta-G solvation = -82.737325 kcal Electronic energy + Delta-G solvation = -14056.579916 eV Core-core repulsion = 11503.815996 eV Total energy + Delta-G solvation = -2552.763920 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.40960 -38.21118 -36.34288 -34.36108 -33.00057 -30.99003 -29.81769 -26.66392 -25.29742 -23.40343 -22.49248 -21.69092 -18.48595 -18.38361 -17.98040 -16.95516 -16.62831 -16.53434 -16.24571 -15.33875 -14.87551 -14.38307 -14.21247 -13.74527 -13.56098 -13.36203 -12.93569 -12.83817 -12.65566 -12.36688 -12.35096 -12.07021 -11.56398 -11.40488 -11.33937 -11.10850 -10.60913 -10.55310 -10.33269 -8.20129 -6.32243 1.40137 1.43650 1.51660 1.96086 2.39700 2.51708 3.12799 3.22569 3.52222 3.73591 4.01291 4.04607 4.21469 4.23869 4.38976 4.43431 4.56276 4.59322 4.68116 4.78809 4.84557 5.13937 5.23416 5.27446 5.33612 5.52171 5.74122 5.84920 5.89076 6.21890 6.24074 6.85398 7.37405 8.91803 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.090732 B = 0.004047 C = 0.004011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 308.526729 B = 6917.710544 C = 6978.724739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.004 4.004 3 Si 0.968 3.032 4 H -0.265 1.265 5 H -0.284 1.284 6 H -0.266 1.266 7 C -0.546 4.546 8 H 0.064 0.936 9 C 0.020 3.980 10 C -0.093 4.093 11 C -0.112 4.112 12 C 0.069 3.931 13 O -0.395 6.395 14 C 0.039 3.961 15 H 0.109 0.891 16 C 0.014 3.986 17 N -0.485 5.485 18 O -0.247 6.247 19 C -0.016 4.016 20 H 0.264 0.736 21 H -0.010 1.010 22 H -0.012 1.012 23 H 0.057 0.943 24 H 0.060 0.940 25 H 0.056 0.944 26 H 0.051 0.949 27 H 0.060 0.940 28 H 0.068 0.932 29 H 0.090 0.910 30 H 0.129 0.871 31 H 0.357 0.643 32 H 0.099 0.901 33 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.789 -18.675 -1.573 21.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.201 4.201 3 Si 0.792 3.208 4 H -0.189 1.189 5 H -0.210 1.210 6 H -0.190 1.190 7 C -0.584 4.584 8 H 0.082 0.918 9 C -0.017 4.017 10 C -0.131 4.131 11 C -0.149 4.149 12 C -0.007 4.007 13 O -0.314 6.314 14 C -0.021 4.021 15 H 0.127 0.873 16 C -0.116 4.116 17 N -0.154 5.154 18 O -0.257 6.257 19 C -0.095 4.095 20 H 0.072 0.928 21 H 0.008 0.992 22 H 0.006 0.994 23 H 0.075 0.925 24 H 0.078 0.922 25 H 0.075 0.925 26 H 0.070 0.930 27 H 0.078 0.922 28 H 0.086 0.914 29 H 0.109 0.891 30 H 0.147 0.853 31 H 0.174 0.826 32 H 0.116 0.884 33 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 8.574 -18.745 -1.364 20.658 hybrid contribution 1.164 1.434 -0.038 1.847 sum 9.737 -17.312 -1.402 19.912 Atomic orbital electron populations 1.70108 1.07972 1.27887 1.51634 1.26052 0.95786 1.03615 0.94687 0.85455 0.78215 0.77811 0.79292 1.18949 1.20956 1.19046 1.21710 0.93695 0.92323 1.50643 0.91797 1.19034 0.94585 0.93373 0.94699 1.21349 0.97982 0.92594 1.01173 1.21472 0.98408 0.93172 1.01887 1.22625 0.94342 0.82388 1.01357 1.88006 1.34589 1.13952 1.94858 1.24374 0.95264 0.87388 0.95089 0.87330 1.23714 1.03576 0.89623 0.94671 1.68935 1.46733 1.08636 0.91109 1.92233 1.60777 1.46076 1.26597 1.24620 0.93970 0.93245 0.97670 0.92767 0.99173 0.99359 0.92463 0.92173 0.92474 0.92970 0.92157 0.91359 0.89123 0.85343 0.82649 0.88356 0.88525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.08 13.29 21.45 0.28 -57.79 16 2 C 0.00 -0.23 5.46 84.65 0.46 0.24 16 3 Si 0.97 44.35 29.54 68.60 2.03 46.38 16 4 H -0.26 -11.53 7.11 99.48 0.71 -10.83 16 5 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 6 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 7 C -0.55 -31.38 9.11 25.60 0.23 -31.15 16 8 H 0.06 3.46 7.74 -2.91 -0.02 3.43 16 9 C 0.02 1.09 4.97 29.84 0.15 1.24 16 10 C -0.09 -3.77 5.15 30.59 0.16 -3.61 16 11 C -0.11 -3.88 5.58 30.60 0.17 -3.71 16 12 C 0.07 1.81 5.80 71.98 0.42 2.22 16 13 O -0.39 -10.71 9.97 -148.98 -1.49 -12.20 16 14 C 0.04 0.72 3.55 31.55 0.11 0.83 16 15 H 0.11 1.36 7.85 -2.39 -0.02 1.34 16 16 C 0.01 0.23 7.64 86.49 0.66 0.89 16 17 N -0.49 -9.14 8.44 -182.22 -1.54 -10.68 16 18 O -0.25 -6.27 12.78 -54.94 -0.70 -6.97 16 19 C -0.02 -0.31 7.64 72.49 0.55 0.25 16 20 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 21 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 22 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 23 H 0.06 2.20 8.14 -2.38 -0.02 2.18 16 24 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 25 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 26 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 27 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.07 1.53 8.10 -2.39 -0.02 1.51 16 29 H 0.09 1.89 7.99 -2.39 -0.02 1.87 16 30 H 0.13 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.36 4.19 9.09 -89.69 -0.82 3.37 16 32 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.10 2.04 8.08 -2.39 -0.02 2.02 16 Total: -1.00 -70.75 280.69 1.76 -68.99 By element: Atomic # 1 Polarization: 4.82 SS G_CDS: 0.26 Total: 5.08 kcal Atomic # 6 Polarization: -35.72 SS G_CDS: 2.92 Total: -32.81 kcal Atomic # 7 Polarization: -67.22 SS G_CDS: -1.25 Total: -68.48 kcal Atomic # 8 Polarization: -16.98 SS G_CDS: -2.19 Total: -19.17 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -70.75 1.76 -68.99 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722481568.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.750 kcal (2) G-P(sol) polarization free energy of solvation -70.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds