Wall clock time and date at job start Mon Mar 30 2020 02:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00248 * 2 1 4 4 H 1.48496 * 109.46831 * 240.00026 * 3 2 1 5 5 H 1.48502 * 109.46854 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46875 * 120.00276 * 3 2 1 7 7 C 1.37879 * 119.99353 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99421 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00830 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.47748 * 180.02562 * 9 7 2 11 11 O 1.42901 * 109.47607 * 180.02562 * 10 9 7 12 12 C 1.42896 * 114.00256 * 179.97438 * 11 10 9 13 13 H 1.09002 * 109.54418 * 329.99751 * 12 11 10 14 14 C 1.53174 * 109.61504 * 90.22011 * 12 11 10 15 15 C 1.53095 * 109.16381 * 176.89191 * 14 12 11 16 16 O 1.42910 * 109.41337 * 302.39093 * 15 14 12 17 17 C 1.42902 * 114.09650 * 61.15575 * 16 15 14 18 18 C 1.53093 * 109.41910 * 298.84413 * 17 16 15 19 19 H 1.09003 * 109.51855 * 297.70418 * 18 17 16 20 20 N 1.46891 * 109.52392 * 177.51284 * 18 17 16 21 21 H 0.97005 * 119.99715 * 359.97438 * 1 2 3 22 22 H 1.09006 * 109.47059 * 59.99950 * 9 7 2 23 23 H 1.08997 * 109.47134 * 300.00919 * 9 7 2 24 24 H 1.08999 * 109.47545 * 59.99760 * 10 9 7 25 25 H 1.09003 * 109.46917 * 299.99873 * 10 9 7 26 26 H 1.09004 * 109.52433 * 296.79694 * 14 12 11 27 27 H 1.08999 * 109.52728 * 56.98629 * 14 12 11 28 28 H 1.08998 * 109.48473 * 182.41141 * 15 14 12 29 29 H 1.08998 * 109.49081 * 62.38034 * 15 14 12 30 30 H 1.08997 * 109.48292 * 178.85819 * 17 16 15 31 31 H 1.09005 * 109.48948 * 58.82779 * 17 16 15 32 32 H 1.00905 * 110.99972 * 60.31808 * 20 18 17 33 33 H 1.00904 * 111.00074 * 184.26256 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6962 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6962 1.2124 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2451 -3.6622 -0.0005 11 8 1.5306 -4.8997 -0.0011 12 6 2.3705 -6.0558 -0.0018 13 1 3.3045 -5.8277 -0.5153 14 6 2.6683 -6.4758 1.4408 15 6 3.5035 -7.7588 1.4285 16 8 2.7972 -8.7786 0.7188 17 6 2.5325 -8.4609 -0.6491 18 6 1.6584 -7.2061 -0.7202 19 1 0.7013 -7.4010 -0.2362 20 7 1.4341 -6.8431 -2.1258 21 1 -0.4850 0.8401 0.0004 22 1 0.6239 -2.5568 -0.8903 23 1 0.6246 -2.5571 0.8896 24 1 2.8718 -3.6045 0.8894 25 1 2.8717 -3.6044 -0.8906 26 1 3.2241 -5.6842 1.9434 27 1 1.7317 -6.6560 1.9686 28 1 3.6823 -8.0861 2.4527 29 1 4.4570 -7.5673 0.9364 30 1 2.0119 -9.2938 -1.1216 31 1 3.4732 -8.2784 -1.1687 32 1 0.9652 -7.5868 -2.6210 33 1 0.9180 -5.9790 -2.1982 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724845146.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:40 Heat of formation + Delta-G solvation = -109.430335 kcal Electronic energy + Delta-G solvation = -14731.677217 eV Core-core repulsion = 12177.755801 eV Total energy + Delta-G solvation = -2553.921416 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.65857 -37.11390 -34.45918 -33.19473 -31.80260 -29.75244 -28.35107 -25.07331 -23.85686 -22.81221 -20.94021 -20.04031 -16.94546 -16.45088 -16.14366 -15.64422 -15.48730 -15.09012 -14.54362 -14.29598 -13.88479 -13.54738 -12.90497 -12.53993 -12.22601 -12.06705 -11.46454 -11.33113 -10.95847 -10.84793 -10.51470 -10.32587 -10.25062 -9.85201 -9.42247 -9.23489 -8.92186 -8.64614 -8.37245 -6.04966 -4.08744 3.31145 3.35358 3.37517 3.70996 4.10567 4.44721 4.55690 4.76823 4.86724 5.10381 5.17275 5.22584 5.31139 5.45751 5.60623 5.61719 5.75449 5.87089 6.01202 6.18176 6.28723 6.34011 6.86246 6.95975 7.23054 7.49086 7.52471 7.76040 7.79962 8.07671 8.33864 8.97486 9.55094 11.06654 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.056145 B = 0.005734 C = 0.005459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 498.586052 B = 4882.167097 C = 5128.308992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.060 3.940 3 Si 0.897 3.103 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.525 4.525 8 H 0.055 0.945 9 C 0.027 3.973 10 C 0.071 3.929 11 O -0.384 6.384 12 C 0.093 3.907 13 H 0.063 0.937 14 C -0.179 4.179 15 C 0.063 3.937 16 O -0.384 6.384 17 C 0.070 3.930 18 C 0.061 3.939 19 H 0.050 0.950 20 N -0.842 5.842 21 H 0.263 0.737 22 H 0.024 0.976 23 H 0.023 0.977 24 H 0.033 0.967 25 H 0.037 0.963 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.096 0.904 29 H 0.052 0.948 30 H 0.093 0.907 31 H 0.060 0.940 32 H 0.337 0.663 33 H 0.359 0.641 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.121 -14.818 -0.240 15.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.142 4.142 3 Si 0.724 3.276 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.563 4.563 8 H 0.074 0.926 9 C -0.011 4.011 10 C -0.005 4.005 11 O -0.304 6.304 12 C 0.034 3.966 13 H 0.082 0.918 14 C -0.217 4.217 15 C -0.014 4.014 16 O -0.301 6.301 17 C -0.007 4.007 18 C -0.051 4.051 19 H 0.068 0.932 20 N -0.374 5.374 21 H 0.072 0.928 22 H 0.042 0.958 23 H 0.041 0.959 24 H 0.052 0.948 25 H 0.055 0.945 26 H 0.098 0.902 27 H 0.097 0.903 28 H 0.114 0.886 29 H 0.070 0.930 30 H 0.111 0.889 31 H 0.078 0.922 32 H 0.149 0.851 33 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 5.502 -14.829 -0.187 15.818 hybrid contribution -0.247 1.231 0.153 1.265 sum 5.254 -13.598 -0.034 14.578 Atomic orbital electron populations 1.69971 1.06090 1.26900 1.50061 1.24991 0.94876 0.99294 0.95066 0.86581 0.79521 0.82786 0.78667 1.20133 1.21158 1.20178 1.21012 0.92965 0.90580 1.51761 0.92629 1.19052 0.94209 0.89471 0.98321 1.22917 0.96354 0.83041 0.98188 1.87917 1.33979 1.13723 1.94744 1.22003 0.94210 0.86782 0.93617 0.91847 1.22759 1.02027 0.98230 0.98727 1.22593 0.93931 0.87613 0.97214 1.87912 1.77096 1.41969 1.23150 1.22540 0.98989 0.96247 0.82953 1.22034 0.98685 0.94635 0.89741 0.93226 1.58622 1.58240 1.09080 1.11494 0.92781 0.95794 0.95886 0.94844 0.94501 0.90199 0.90263 0.88598 0.93020 0.88851 0.92214 0.85116 0.82632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.96 13.29 55.43 0.74 -26.23 16 2 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 3 Si 0.90 21.59 29.54 -169.99 -5.02 16.57 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.52 -14.99 9.11 -34.44 -0.31 -15.30 16 8 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 9 C 0.03 0.71 5.34 -27.89 -0.15 0.56 16 10 C 0.07 1.55 5.69 37.15 0.21 1.76 16 11 O -0.38 -7.67 9.46 -35.23 -0.33 -8.00 16 12 C 0.09 1.47 2.33 -26.55 -0.06 1.41 16 13 H 0.06 1.02 7.79 -51.93 -0.40 0.61 16 14 C -0.18 -2.48 5.76 -26.59 -0.15 -2.63 16 15 C 0.06 0.73 6.84 37.21 0.25 0.98 16 16 O -0.38 -4.94 10.77 -35.23 -0.38 -5.32 16 17 C 0.07 0.83 6.42 37.21 0.24 1.06 16 18 C 0.06 0.84 3.16 -67.58 -0.21 0.63 16 19 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 20 N -0.84 -10.94 9.25 -4.55 -0.04 -10.98 16 21 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 22 H 0.02 0.68 8.14 -51.93 -0.42 0.25 16 23 H 0.02 0.66 8.14 -51.93 -0.42 0.23 16 24 H 0.03 0.70 7.98 -51.93 -0.41 0.29 16 25 H 0.04 0.79 8.09 -51.93 -0.42 0.37 16 26 H 0.08 1.10 7.98 -51.93 -0.41 0.68 16 27 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 28 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.34 3.44 9.04 -39.29 -0.36 3.09 16 33 H 0.36 5.23 8.50 -39.29 -0.33 4.89 16 LS Contribution 274.32 15.07 4.13 4.13 Total: -1.00 -30.81 274.32 -6.46 -37.26 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: -5.27 Total: 2.48 kcal Atomic # 6 Polarization: -9.63 SS G_CDS: -0.28 Total: -9.91 kcal Atomic # 7 Polarization: -37.91 SS G_CDS: 0.69 Total: -37.21 kcal Atomic # 8 Polarization: -12.61 SS G_CDS: -0.71 Total: -13.33 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -30.81 -6.46 -37.26 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724845146.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.168 kcal (2) G-P(sol) polarization free energy of solvation -30.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds