Wall clock time and date at job start Mon Mar 30 2020 02:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00248 * 2 1 4 4 H 1.48496 * 109.46831 * 240.00026 * 3 2 1 5 5 H 1.48502 * 109.46854 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46875 * 120.00276 * 3 2 1 7 7 C 1.37879 * 119.99353 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99421 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00830 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.47748 * 180.02562 * 9 7 2 11 11 O 1.42901 * 109.47607 * 180.02562 * 10 9 7 12 12 C 1.42896 * 114.00256 * 179.97438 * 11 10 9 13 13 H 1.09002 * 109.54418 * 329.99751 * 12 11 10 14 14 C 1.53174 * 109.61504 * 90.22011 * 12 11 10 15 15 C 1.53095 * 109.16381 * 176.89191 * 14 12 11 16 16 O 1.42910 * 109.41337 * 302.39093 * 15 14 12 17 17 C 1.42902 * 114.09650 * 61.15575 * 16 15 14 18 18 C 1.53093 * 109.41910 * 298.84413 * 17 16 15 19 19 H 1.09003 * 109.51855 * 297.70418 * 18 17 16 20 20 N 1.46891 * 109.52392 * 177.51284 * 18 17 16 21 21 H 0.97005 * 119.99715 * 359.97438 * 1 2 3 22 22 H 1.09006 * 109.47059 * 59.99950 * 9 7 2 23 23 H 1.08997 * 109.47134 * 300.00919 * 9 7 2 24 24 H 1.08999 * 109.47545 * 59.99760 * 10 9 7 25 25 H 1.09003 * 109.46917 * 299.99873 * 10 9 7 26 26 H 1.09004 * 109.52433 * 296.79694 * 14 12 11 27 27 H 1.08999 * 109.52728 * 56.98629 * 14 12 11 28 28 H 1.08998 * 109.48473 * 182.41141 * 15 14 12 29 29 H 1.08998 * 109.49081 * 62.38034 * 15 14 12 30 30 H 1.08997 * 109.48292 * 178.85819 * 17 16 15 31 31 H 1.09005 * 109.48948 * 58.82779 * 17 16 15 32 32 H 1.00905 * 110.99972 * 60.31808 * 20 18 17 33 33 H 1.00904 * 111.00074 * 184.26256 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6962 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6962 1.2124 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2451 -3.6622 -0.0005 11 8 1.5306 -4.8997 -0.0011 12 6 2.3705 -6.0558 -0.0018 13 1 3.3045 -5.8277 -0.5153 14 6 2.6683 -6.4758 1.4408 15 6 3.5035 -7.7588 1.4285 16 8 2.7972 -8.7786 0.7188 17 6 2.5325 -8.4609 -0.6491 18 6 1.6584 -7.2061 -0.7202 19 1 0.7013 -7.4010 -0.2362 20 7 1.4341 -6.8431 -2.1258 21 1 -0.4850 0.8401 0.0004 22 1 0.6239 -2.5568 -0.8903 23 1 0.6246 -2.5571 0.8896 24 1 2.8718 -3.6045 0.8894 25 1 2.8717 -3.6044 -0.8906 26 1 3.2241 -5.6842 1.9434 27 1 1.7317 -6.6560 1.9686 28 1 3.6823 -8.0861 2.4527 29 1 4.4570 -7.5673 0.9364 30 1 2.0119 -9.2938 -1.1216 31 1 3.4732 -8.2784 -1.1687 32 1 0.9652 -7.5868 -2.6210 33 1 0.9180 -5.9790 -2.1982 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724845146.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:40 Heat of formation + Delta-G solvation = -132.904171 kcal Electronic energy + Delta-G solvation = -14732.695119 eV Core-core repulsion = 12177.755801 eV Total energy + Delta-G solvation = -2554.939318 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.77874 -38.51696 -35.77577 -35.11535 -33.07130 -31.66427 -29.39922 -26.89849 -25.20555 -23.89974 -22.86309 -21.21604 -18.78669 -17.64803 -17.49872 -17.01908 -16.66606 -16.47939 -16.32458 -15.55046 -15.19473 -14.94132 -14.28777 -14.10389 -13.64880 -13.53364 -13.11723 -12.83831 -12.54517 -12.51142 -12.11708 -11.91104 -11.63479 -11.40355 -11.33333 -10.73003 -10.65409 -10.38597 -9.73308 -8.24908 -6.38273 1.40520 1.44476 1.52539 2.36050 2.70797 2.85501 3.09070 3.48769 3.66932 3.82156 4.00897 4.12940 4.21105 4.34998 4.40201 4.44143 4.57982 4.68011 4.73634 4.86809 4.90764 4.99347 5.12474 5.35252 5.55851 5.70967 5.96704 6.09842 6.20102 6.38592 6.52025 6.77234 7.31713 8.87887 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.056145 B = 0.005734 C = 0.005459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 498.586052 B = 4882.167097 C = 5128.308992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.974 3.026 4 H -0.264 1.264 5 H -0.282 1.282 6 H -0.264 1.264 7 C -0.548 4.548 8 H 0.067 0.933 9 C 0.030 3.970 10 C 0.090 3.910 11 O -0.402 6.402 12 C 0.083 3.917 13 H 0.065 0.935 14 C -0.177 4.177 15 C 0.066 3.934 16 O -0.394 6.394 17 C 0.075 3.925 18 C 0.064 3.936 19 H 0.037 0.963 20 N -0.842 5.842 21 H 0.266 0.734 22 H -0.005 1.005 23 H -0.008 1.008 24 H 0.043 0.957 25 H 0.043 0.957 26 H 0.079 0.921 27 H 0.067 0.933 28 H 0.118 0.882 29 H 0.066 0.934 30 H 0.116 0.884 31 H 0.067 0.933 32 H 0.353 0.647 33 H 0.349 0.651 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.886 -15.278 -0.290 16.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.197 4.197 3 Si 0.797 3.203 4 H -0.189 1.189 5 H -0.207 1.207 6 H -0.189 1.189 7 C -0.585 4.585 8 H 0.085 0.915 9 C -0.007 4.007 10 C 0.014 3.986 11 O -0.322 6.322 12 C 0.025 3.975 13 H 0.083 0.917 14 C -0.215 4.215 15 C -0.010 4.010 16 O -0.311 6.311 17 C -0.002 4.002 18 C -0.049 4.049 19 H 0.055 0.945 20 N -0.375 5.375 21 H 0.075 0.925 22 H 0.013 0.987 23 H 0.010 0.990 24 H 0.061 0.939 25 H 0.061 0.939 26 H 0.098 0.902 27 H 0.085 0.915 28 H 0.136 0.864 29 H 0.084 0.916 30 H 0.133 0.867 31 H 0.085 0.915 32 H 0.167 0.833 33 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 7.279 -15.331 -0.242 16.973 hybrid contribution -0.848 1.302 0.158 1.562 sum 6.431 -14.029 -0.084 15.433 Atomic orbital electron populations 1.70118 1.08040 1.28167 1.50825 1.26033 0.95799 1.03629 0.94213 0.85370 0.78160 0.77345 0.79388 1.18877 1.20711 1.18905 1.21440 0.93695 0.91500 1.51913 0.91531 1.18906 0.94549 0.91819 0.95405 1.22462 0.94704 0.82597 0.98833 1.87877 1.35145 1.14177 1.95009 1.22328 0.93970 0.85771 0.95397 0.91718 1.22741 1.02026 0.99696 0.97061 1.22698 0.93654 0.86060 0.98639 1.87910 1.77290 1.42301 1.23637 1.22604 0.99053 0.95746 0.82842 1.22044 0.98383 0.94728 0.89696 0.94537 1.58630 1.58340 1.09255 1.11257 0.92527 0.98654 0.98971 0.93909 0.93883 0.90200 0.91453 0.86420 0.91570 0.86654 0.91492 0.83292 0.83823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.42 13.29 21.45 0.28 -57.14 16 2 C 0.00 0.09 5.46 84.66 0.46 0.55 16 3 Si 0.97 43.96 29.54 68.60 2.03 45.98 16 4 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 5 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 6 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 7 C -0.55 -31.53 9.11 25.60 0.23 -31.29 16 8 H 0.07 3.60 7.74 -2.91 -0.02 3.57 16 9 C 0.03 1.69 5.34 29.84 0.16 1.85 16 10 C 0.09 3.97 5.69 71.98 0.41 4.38 16 11 O -0.40 -16.25 9.46 -148.98 -1.41 -17.66 16 12 C 0.08 2.58 2.33 30.71 0.07 2.65 16 13 H 0.06 1.99 7.79 -2.39 -0.02 1.97 16 14 C -0.18 -4.71 5.76 30.68 0.18 -4.53 16 15 C 0.07 1.36 6.84 72.01 0.49 1.85 16 16 O -0.39 -9.18 10.77 -148.98 -1.60 -10.79 16 17 C 0.07 1.58 6.42 72.01 0.46 2.04 16 18 C 0.06 1.69 3.16 45.01 0.14 1.83 16 19 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 20 N -0.84 -21.11 9.25 -168.31 -1.56 -22.66 16 21 H 0.27 15.31 8.31 -92.70 -0.77 14.54 16 22 H 0.00 -0.30 8.14 -2.38 -0.02 -0.32 16 23 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 24 H 0.04 1.79 7.98 -2.39 -0.02 1.77 16 25 H 0.04 1.83 8.09 -2.39 -0.02 1.81 16 26 H 0.08 2.10 7.98 -2.39 -0.02 2.09 16 27 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 28 H 0.12 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.12 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 32 H 0.35 6.72 9.04 -89.69 -0.81 5.91 16 33 H 0.35 10.17 8.50 -89.69 -0.76 9.41 16 Total: -1.00 -66.29 274.32 -0.13 -66.42 By element: Atomic # 1 Polarization: 16.98 SS G_CDS: -0.48 Total: 16.50 kcal Atomic # 6 Polarization: -23.27 SS G_CDS: 2.61 Total: -20.66 kcal Atomic # 7 Polarization: -78.53 SS G_CDS: -1.27 Total: -79.80 kcal Atomic # 8 Polarization: -25.43 SS G_CDS: -3.01 Total: -28.45 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.98 kcal Total: -66.29 -0.13 -66.42 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724845146.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.483 kcal (2) G-P(sol) polarization free energy of solvation -66.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds