Wall clock time and date at job start Mon Mar 30 2020 02:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47209 * 270.00481 * 3 2 1 5 5 H 1.48501 * 109.47358 * 29.99973 * 3 2 1 6 6 H 1.48496 * 109.47341 * 150.00585 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 C 1.53004 * 109.47211 * 180.27574 * 9 7 2 11 11 O 1.42902 * 109.47177 * 180.02562 * 10 9 7 12 12 C 1.42898 * 113.99935 * 180.02562 * 11 10 9 13 13 H 1.09004 * 109.54373 * 29.82147 * 12 11 10 14 14 C 1.53179 * 109.54351 * 269.55842 * 12 11 10 15 15 C 1.53092 * 109.16394 * 183.15350 * 14 12 11 16 16 O 1.42908 * 109.41552 * 57.60509 * 15 14 12 17 17 C 1.42896 * 114.09722 * 298.84086 * 16 15 14 18 18 C 1.53095 * 109.41482 * 61.16026 * 17 16 15 19 19 H 1.08999 * 109.57649 * 62.32688 * 18 17 16 20 20 N 1.46899 * 109.52400 * 182.48338 * 18 17 16 21 21 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 22 22 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 23 23 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 24 24 H 1.09000 * 109.47211 * 300.00973 * 10 9 7 25 25 H 1.09007 * 109.46376 * 60.00431 * 10 9 7 26 26 H 1.09000 * 109.52186 * 303.05606 * 14 12 11 27 27 H 1.09003 * 109.52458 * 63.24412 * 14 12 11 28 28 H 1.09002 * 109.47931 * 297.62432 * 15 14 12 29 29 H 1.09000 * 109.48938 * 177.59169 * 15 14 12 30 30 H 1.08998 * 109.48264 * 301.17798 * 17 16 15 31 31 H 1.09000 * 109.48146 * 181.13832 * 17 16 15 32 32 H 1.00900 * 111.00001 * 299.68709 * 20 18 17 33 33 H 1.00905 * 111.00166 * 63.63786 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.6999 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 6 2.2454 -3.6620 0.0104 11 8 1.5310 -4.8996 0.0154 12 6 2.3710 -6.0556 0.0210 13 1 3.3060 -5.8245 0.5314 14 6 2.6640 -6.4830 -1.4205 15 6 3.4984 -7.7664 -1.4044 16 8 2.7938 -8.7821 -0.6873 17 6 2.5336 -8.4575 0.6797 18 6 1.6605 -7.2018 0.7473 19 1 0.7013 -7.3977 0.2681 20 7 1.4408 -6.8316 2.1519 21 1 -0.4850 0.8400 0.0004 22 1 0.6245 -2.5529 0.8956 23 1 0.6244 -2.5609 -0.8844 24 1 2.8721 -3.6081 -0.8798 25 1 2.8721 -3.6002 0.9002 26 1 1.7257 -6.6652 -1.9443 27 1 3.2187 -5.6942 -1.9287 28 1 4.4535 -7.5729 -0.9161 29 1 3.6739 -8.0990 -2.4274 30 1 3.4761 -8.2730 1.1952 31 1 2.0139 -9.2878 1.1580 32 1 0.9731 -7.5726 2.6522 33 1 2.3100 -6.5847 2.6009 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724845147.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:43 Heat of formation + Delta-G solvation = -106.090587 kcal Electronic energy + Delta-G solvation = -14725.135223 eV Core-core repulsion = 12171.358629 eV Total energy + Delta-G solvation = -2553.776594 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.72574 -37.03177 -34.59439 -33.17262 -31.81429 -29.69423 -28.21785 -25.04470 -23.84851 -22.89154 -20.90514 -20.24113 -17.03839 -16.29406 -16.12623 -15.92038 -15.34712 -15.18455 -14.50817 -14.44093 -13.79614 -13.16994 -12.90703 -12.82891 -12.19636 -11.87975 -11.46799 -11.32052 -10.94609 -10.88187 -10.49582 -10.32239 -10.20834 -10.02308 -9.44581 -9.16236 -8.79254 -8.54450 -8.32113 -5.99967 -4.03626 3.32205 3.37985 3.41107 3.65331 4.12828 4.47796 4.50852 4.72347 4.82559 4.99650 5.06527 5.14647 5.35841 5.37006 5.47385 5.51765 5.73633 5.77183 6.04909 6.20535 6.33332 6.37801 6.91497 6.94393 7.17175 7.43546 7.60893 7.85267 7.87166 8.17448 8.40033 9.03188 9.59776 11.11697 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.056120 B = 0.005722 C = 0.005458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 498.811193 B = 4892.495910 C = 5129.261532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.059 3.941 3 Si 0.896 3.104 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.523 4.523 8 H 0.055 0.945 9 C 0.027 3.973 10 C 0.070 3.930 11 O -0.366 6.366 12 C 0.097 3.903 13 H 0.052 0.948 14 C -0.180 4.180 15 C 0.063 3.937 16 O -0.382 6.382 17 C 0.032 3.968 18 C 0.062 3.938 19 H 0.096 0.904 20 N -0.825 5.825 21 H 0.262 0.738 22 H 0.026 0.974 23 H 0.023 0.977 24 H 0.030 0.970 25 H 0.033 0.967 26 H 0.082 0.918 27 H 0.080 0.920 28 H 0.049 0.951 29 H 0.097 0.903 30 H 0.047 0.953 31 H 0.093 0.907 32 H 0.339 0.661 33 H 0.338 0.662 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.792 -15.713 0.731 17.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.143 4.143 3 Si 0.723 3.277 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.562 4.562 8 H 0.073 0.927 9 C -0.011 4.011 10 C -0.005 4.005 11 O -0.285 6.285 12 C 0.037 3.963 13 H 0.070 0.930 14 C -0.218 4.218 15 C -0.014 4.014 16 O -0.299 6.299 17 C -0.048 4.048 18 C -0.051 4.051 19 H 0.114 0.886 20 N -0.355 5.355 21 H 0.071 0.929 22 H 0.044 0.956 23 H 0.041 0.959 24 H 0.048 0.952 25 H 0.051 0.949 26 H 0.100 0.900 27 H 0.098 0.902 28 H 0.067 0.933 29 H 0.115 0.885 30 H 0.065 0.935 31 H 0.111 0.889 32 H 0.152 0.848 33 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 5.924 -15.173 0.352 16.293 hybrid contribution 1.472 0.446 0.315 1.570 sum 7.396 -14.727 0.667 16.493 Atomic orbital electron populations 1.69984 1.06060 1.26708 1.50183 1.24990 0.94859 0.99237 0.95181 0.86542 0.79752 0.83265 0.78109 1.20608 1.21111 1.19878 1.21058 0.92926 0.90661 1.51534 0.92681 1.19046 0.94222 0.89327 0.98466 1.22886 0.96359 0.83592 0.97688 1.88045 1.32892 1.12997 1.94557 1.21906 0.93357 0.87484 0.93517 0.93030 1.22781 1.02151 0.98032 0.98884 1.22610 0.93814 0.87839 0.97122 1.87907 1.77238 1.42183 1.22591 1.23589 0.98825 0.98465 0.83873 1.22249 1.00019 0.92382 0.90422 0.88557 1.58645 1.28978 1.45932 1.01906 0.92869 0.95572 0.95887 0.95174 0.94892 0.89966 0.90176 0.93263 0.88515 0.93454 0.88858 0.84775 0.84908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.37 13.29 55.43 0.74 -26.63 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 3 Si 0.90 21.80 29.54 -169.99 -5.02 16.78 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.52 -15.18 9.11 -34.44 -0.31 -15.49 16 8 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.03 0.73 5.34 -27.88 -0.15 0.58 16 10 C 0.07 1.58 5.69 37.16 0.21 1.80 16 11 O -0.37 -7.63 9.92 -35.23 -0.35 -7.98 16 12 C 0.10 1.51 2.27 -26.55 -0.06 1.45 16 13 H 0.05 0.77 7.79 -51.93 -0.40 0.37 16 14 C -0.18 -2.46 5.76 -26.59 -0.15 -2.61 16 15 C 0.06 0.70 6.84 37.20 0.25 0.96 16 16 O -0.38 -4.76 10.77 -35.23 -0.38 -5.14 16 17 C 0.03 0.34 6.42 37.21 0.24 0.58 16 18 C 0.06 0.82 3.13 -67.57 -0.21 0.61 16 19 H 0.10 1.43 8.14 -51.93 -0.42 1.00 16 20 N -0.82 -10.49 9.18 -4.55 -0.04 -10.53 16 21 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 22 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 23 H 0.02 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.03 0.64 7.99 -51.93 -0.42 0.23 16 25 H 0.03 0.72 8.09 -51.93 -0.42 0.30 16 26 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 27 H 0.08 1.09 7.99 -51.93 -0.42 0.67 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.34 3.36 9.04 -39.29 -0.36 3.00 16 33 H 0.34 3.87 8.98 -39.29 -0.35 3.52 16 LS Contribution 275.11 15.07 4.15 4.15 Total: -1.00 -32.43 275.11 -6.48 -38.91 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: -5.29 Total: 0.94 kcal Atomic # 6 Polarization: -10.21 SS G_CDS: -0.28 Total: -10.49 kcal Atomic # 7 Polarization: -37.86 SS G_CDS: 0.69 Total: -37.17 kcal Atomic # 8 Polarization: -12.38 SS G_CDS: -0.73 Total: -13.11 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -32.43 -6.48 -38.91 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724845147.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.185 kcal (2) G-P(sol) polarization free energy of solvation -32.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds