Wall clock time and date at job start Mon Mar 30 2020 02:40:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 119.99852 * 2 1 4 4 H 1.48498 * 109.47027 * 240.00365 * 3 2 1 5 5 H 1.48498 * 109.47261 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.47204 * 120.00542 * 3 2 1 7 7 C 1.38807 * 119.99815 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99628 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00468 * 359.97438 * 7 2 1 10 10 C 1.47426 * 125.64609 * 0.02562 * 9 7 2 11 11 C 1.54911 * 104.82928 * 155.83727 * 10 9 7 12 12 H 1.08999 * 111.00994 * 278.90372 * 11 10 9 13 13 C 1.53006 * 111.00335 * 155.08527 * 11 10 9 14 14 O 1.42906 * 109.46752 * 66.45432 * 13 11 10 15 15 C 1.55154 * 101.58178 * 37.01655 * 11 10 9 16 16 H 1.08997 * 110.72660 * 82.85524 * 15 11 10 17 17 C 1.53003 * 110.71976 * 206.13392 * 15 11 10 18 18 C 1.52999 * 109.46895 * 184.99810 * 17 15 11 19 19 O 1.42904 * 109.47223 * 179.97438 * 18 17 15 20 20 C 1.47022 * 125.65019 * 179.97438 * 9 7 2 21 21 H 0.96999 * 120.00012 * 359.97438 * 1 2 3 22 22 H 1.08999 * 110.36535 * 37.00278 * 10 9 7 23 23 H 1.08995 * 110.37139 * 274.68021 * 10 9 7 24 24 H 1.08993 * 109.46955 * 186.45850 * 13 11 10 25 25 H 1.09000 * 109.47050 * 306.45679 * 13 11 10 26 26 H 0.96698 * 113.99404 * 180.02562 * 14 13 11 27 27 H 1.09000 * 109.47164 * 304.99317 * 17 15 11 28 28 H 1.08994 * 109.47137 * 65.00035 * 17 15 11 29 29 H 1.09001 * 109.47334 * 299.99777 * 18 17 15 30 30 H 1.09000 * 109.47478 * 60.00277 * 18 17 15 31 31 H 0.96698 * 114.00136 * 180.02562 * 19 18 17 32 32 H 1.08999 * 109.88426 * 300.51125 * 20 9 7 33 33 H 1.09005 * 109.87915 * 61.52476 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1038 1.6964 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1415 -2.5332 -0.0005 11 6 -0.4016 -3.9319 -0.6135 12 1 -0.3526 -3.8968 -1.7018 13 6 -1.7454 -4.4944 -0.1458 14 8 -2.8061 -3.6971 -0.6764 15 6 0.7784 -4.7524 -0.0290 16 1 0.5460 -5.0987 0.9780 17 6 1.1232 -5.9306 -0.9422 18 6 2.2027 -6.7897 -0.2806 19 8 2.5243 -7.8905 -1.1332 20 6 1.9318 -3.7274 -0.0016 21 1 -0.4850 0.8400 0.0004 22 1 -0.5993 -1.7584 -0.6155 23 1 -0.5273 -2.4875 1.0178 24 1 -1.8516 -5.5207 -0.4968 25 1 -1.7874 -4.4767 0.9433 26 1 -3.6891 -3.9962 -0.4197 27 1 0.2309 -6.5338 -1.1096 28 1 1.4921 -5.5549 -1.8965 29 1 3.0950 -6.1865 -0.1132 30 1 1.8338 -7.1655 0.6737 31 1 3.2033 -8.4792 -0.7762 32 1 2.5581 -3.8502 -0.8852 33 1 2.5306 -3.8640 0.8990 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001176965544.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:07 Heat of formation + Delta-G solvation = -84.996122 kcal Electronic energy + Delta-G solvation = -15031.086279 eV Core-core repulsion = 12478.224410 eV Total energy + Delta-G solvation = -2552.861869 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.47782 -36.73416 -35.80822 -33.28933 -30.90697 -29.93097 -26.59917 -25.30244 -23.67466 -21.82098 -19.59308 -19.44076 -17.42133 -16.73330 -16.61175 -15.52174 -14.86680 -14.41141 -14.06086 -13.78845 -13.52535 -12.72829 -12.33010 -12.04176 -11.80875 -11.53076 -11.14712 -10.97239 -10.76386 -10.68819 -10.19133 -10.09751 -10.00635 -9.78450 -9.69252 -9.58761 -9.21886 -8.57947 -6.76354 -5.56642 -3.00028 3.44522 3.48178 3.50178 4.26311 4.53199 4.69382 5.11784 5.27554 5.39931 5.46724 5.54321 5.58564 5.66453 5.72585 5.83858 5.93750 6.13747 6.24883 6.38075 6.38833 6.55456 6.66831 6.79077 7.01285 7.60710 7.64582 7.69621 7.99873 8.07171 8.47854 9.29237 9.90169 10.55421 11.46002 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.028320 B = 0.009030 C = 0.007025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.459587 B = 3100.096647 C = 3984.818212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.011 4.011 3 Si 0.914 3.086 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.286 1.286 7 C -0.226 4.226 8 H 0.076 0.924 9 N -0.607 5.607 10 C 0.167 3.833 11 C -0.111 4.111 12 H 0.076 0.924 13 C 0.093 3.907 14 O -0.563 6.563 15 C -0.091 4.091 16 H 0.072 0.928 17 C -0.106 4.106 18 C 0.075 3.925 19 O -0.579 6.579 20 C 0.141 3.859 21 H 0.253 0.747 22 H 0.110 0.890 23 H 0.010 0.990 24 H 0.034 0.966 25 H 0.041 0.959 26 H 0.368 0.632 27 H 0.064 0.936 28 H 0.071 0.929 29 H 0.049 0.951 30 H 0.042 0.958 31 H 0.375 0.625 32 H 0.024 0.976 33 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.410 -12.587 0.865 12.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.207 4.207 3 Si 0.744 3.256 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.213 1.213 7 C -0.355 4.355 8 H 0.094 0.906 9 N -0.333 5.333 10 C 0.042 3.958 11 C -0.131 4.131 12 H 0.095 0.905 13 C 0.015 3.985 14 O -0.367 6.367 15 C -0.110 4.110 16 H 0.090 0.910 17 C -0.144 4.144 18 C -0.003 4.003 19 O -0.384 6.384 20 C 0.015 3.985 21 H 0.063 0.937 22 H 0.128 0.872 23 H 0.028 0.972 24 H 0.052 0.948 25 H 0.059 0.941 26 H 0.213 0.787 27 H 0.083 0.917 28 H 0.090 0.910 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.221 0.779 32 H 0.042 0.958 33 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -0.390 -11.717 0.234 11.726 hybrid contribution 0.477 0.191 0.794 0.946 sum 0.087 -11.526 1.028 11.572 Atomic orbital electron populations 1.69824 1.04793 1.24838 1.57168 1.24816 0.95725 0.97697 1.02438 0.86164 0.78385 0.83179 0.77823 1.21181 1.21551 1.21288 1.19020 0.90427 0.82517 1.43506 0.90603 1.44533 1.02137 0.99731 1.86866 1.21870 0.84061 0.91955 0.97878 1.22634 0.90472 0.99171 1.00813 0.90538 1.22091 0.87611 0.92305 0.96468 1.86629 1.16662 1.57143 1.76250 1.22091 0.96680 0.94007 0.98220 0.90981 1.21530 0.97744 0.95517 0.99618 1.22294 0.98222 0.87386 0.92376 1.86479 1.62341 1.40705 1.48830 1.21361 0.93518 0.85940 0.97726 0.93669 0.87229 0.97220 0.94815 0.94113 0.78688 0.91696 0.91020 0.93246 0.93941 0.77935 0.95796 0.96309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.85 10.09 55.49 0.56 -27.29 16 2 C -0.01 -0.32 5.49 -17.43 -0.10 -0.42 16 3 Si 0.91 22.64 29.55 -169.99 -5.02 17.62 16 4 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 7 C -0.23 -6.54 10.27 -15.06 -0.15 -6.69 16 8 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 9 N -0.61 -16.23 3.39 -170.07 -0.58 -16.81 16 10 C 0.17 4.28 5.22 -2.53 -0.01 4.27 16 11 C -0.11 -2.23 2.77 -88.47 -0.25 -2.48 16 12 H 0.08 1.62 8.05 -51.93 -0.42 1.20 16 13 C 0.09 1.55 6.49 37.16 0.24 1.79 16 14 O -0.56 -9.78 13.51 -35.23 -0.48 -10.26 16 15 C -0.09 -1.61 2.40 -88.78 -0.21 -1.82 16 16 H 0.07 1.19 8.04 -51.93 -0.42 0.77 16 17 C -0.11 -1.61 4.99 -26.73 -0.13 -1.74 16 18 C 0.07 0.97 6.94 37.16 0.26 1.23 16 19 O -0.58 -7.31 13.66 -35.23 -0.48 -7.80 16 20 C 0.14 3.02 6.23 -3.06 -0.02 3.00 16 21 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 22 H 0.11 3.24 5.87 -51.93 -0.30 2.93 16 23 H 0.01 0.27 8.00 -51.93 -0.42 -0.15 16 24 H 0.03 0.47 8.12 -51.93 -0.42 0.05 16 25 H 0.04 0.65 8.10 -51.93 -0.42 0.23 16 26 H 0.37 4.24 9.12 45.56 0.42 4.65 16 27 H 0.06 0.93 8.13 -51.93 -0.42 0.51 16 28 H 0.07 1.18 7.93 -51.93 -0.41 0.77 16 29 H 0.05 0.64 7.68 -51.93 -0.40 0.24 16 30 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.37 2.84 9.12 45.56 0.42 3.25 16 32 H 0.02 0.52 7.68 -51.93 -0.40 0.12 16 33 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 LS Contribution 270.59 15.07 4.08 4.08 Total: -1.00 -33.94 270.59 -5.89 -39.82 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -3.59 Total: 3.49 kcal Atomic # 6 Polarization: -2.49 SS G_CDS: -0.38 Total: -2.86 kcal Atomic # 7 Polarization: -44.08 SS G_CDS: -0.02 Total: -44.10 kcal Atomic # 8 Polarization: -17.10 SS G_CDS: -0.96 Total: -18.05 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.02 Total: 17.62 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -33.94 -5.89 -39.82 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176965544.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.172 kcal (2) G-P(sol) polarization free energy of solvation -33.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds