Wall clock time and date at job start Mon Mar 30 2020 02:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86798 * 120.00147 * 2 1 4 4 H 1.48497 * 109.47169 * 269.99982 * 3 2 1 5 5 H 1.48506 * 109.46932 * 29.99785 * 3 2 1 6 6 H 1.48502 * 109.47233 * 149.99565 * 3 2 1 7 7 C 1.38814 * 119.99933 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99891 * 189.10077 * 7 2 1 9 9 N 1.36935 * 120.00014 * 9.09996 * 7 2 1 10 10 C 1.48143 * 127.83847 * 15.56846 * 9 7 2 11 11 C 1.54389 * 104.61330 * 140.41497 * 10 9 7 12 12 H 1.08996 * 110.34332 * 264.99485 * 11 10 9 13 13 C 1.53009 * 110.34001 * 142.74236 * 11 10 9 14 14 O 1.42894 * 109.47204 * 69.46204 * 13 11 10 15 15 C 1.54279 * 104.96296 * 23.87052 * 11 10 9 16 16 H 1.08993 * 110.34649 * 241.12688 * 15 11 10 17 17 C 1.53000 * 110.34180 * 118.97040 * 15 11 10 18 18 C 1.53003 * 109.47005 * 176.47626 * 17 15 11 19 19 O 1.42907 * 109.47263 * 180.02562 * 18 17 15 20 20 C 1.48143 * 127.83934 * 195.57733 * 9 7 2 21 21 H 0.96995 * 119.99883 * 0.02562 * 1 2 3 22 22 H 1.09002 * 110.40547 * 21.63887 * 10 9 7 23 23 H 1.08993 * 110.41553 * 259.20115 * 10 9 7 24 24 H 1.08999 * 109.46891 * 189.46585 * 13 11 10 25 25 H 1.09006 * 109.47124 * 309.46138 * 13 11 10 26 26 H 0.96698 * 114.00082 * 179.97438 * 14 13 11 27 27 H 1.08994 * 109.47462 * 296.47331 * 17 15 11 28 28 H 1.09002 * 109.47296 * 56.48331 * 17 15 11 29 29 H 1.09002 * 109.47392 * 300.00169 * 18 17 15 30 30 H 1.08997 * 109.47394 * 60.00326 * 18 17 15 31 31 H 0.96695 * 113.99983 * 180.02562 * 19 18 17 32 32 H 1.08998 * 110.40944 * 100.79371 * 20 9 7 33 33 H 1.09006 * 110.40290 * 338.37053 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4401 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0800 -1.2080 0.1485 9 7 1.3385 -2.3807 -0.1865 10 6 -0.0342 -2.5711 -0.7101 11 6 0.0639 -3.8173 -1.6160 12 1 0.2219 -3.5206 -2.6529 13 6 -1.2031 -4.6662 -1.4918 14 8 -2.3008 -3.9739 -2.0898 15 6 1.2861 -4.5976 -1.0892 16 1 2.0445 -4.6842 -1.8672 17 6 0.8623 -5.9854 -0.6040 18 6 2.0995 -6.7732 -0.1684 19 8 1.7038 -8.0696 0.2842 20 6 1.8195 -3.7545 0.0890 21 1 -0.4850 0.8400 -0.0004 22 1 -0.3432 -1.7022 -1.2912 23 1 -0.7317 -2.7499 0.1081 24 1 -1.0536 -5.6186 -2.0004 25 1 -1.4177 -4.8466 -0.4384 26 1 -3.1388 -4.4547 -2.0480 27 1 0.1811 -5.8827 0.2406 28 1 0.3604 -6.5157 -1.4134 29 1 2.7809 -6.8759 -1.0130 30 1 2.6015 -6.2430 0.6409 31 1 2.4390 -8.6253 0.5769 32 1 1.4115 -4.1181 1.0321 33 1 2.9091 -3.7784 0.1109 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001176965546.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:11 Heat of formation + Delta-G solvation = -81.791965 kcal Electronic energy + Delta-G solvation = -15119.351284 eV Core-core repulsion = 12566.628357 eV Total energy + Delta-G solvation = -2552.722927 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.70753 -36.68139 -35.74699 -33.28621 -30.93459 -29.76466 -26.65812 -25.37255 -23.49429 -22.23242 -20.33145 -18.40087 -17.35580 -16.92054 -16.49711 -15.47668 -14.94064 -14.50029 -14.05434 -13.73316 -13.50161 -13.00802 -12.53120 -12.05706 -11.54276 -11.45873 -11.26847 -10.87024 -10.80711 -10.71449 -10.14165 -10.06639 -9.93573 -9.83950 -9.64565 -9.56726 -9.20137 -8.58397 -6.79201 -5.71296 -3.06996 3.41924 3.46567 3.48909 4.29197 4.50822 4.69374 5.12449 5.27113 5.34906 5.42482 5.56328 5.64261 5.67031 5.80107 5.87680 6.00360 6.13347 6.22178 6.29163 6.39319 6.60785 6.66377 6.83412 7.01525 7.48814 7.64505 7.65383 7.84949 8.06200 8.30786 9.18136 9.81194 10.59282 11.41981 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.032298 B = 0.008768 C = 0.007146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.712317 B = 3192.517117 C = 3917.369127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C -0.006 4.006 3 Si 0.911 3.089 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.229 4.229 8 H 0.075 0.925 9 N -0.599 5.599 10 C 0.171 3.829 11 C -0.109 4.109 12 H 0.071 0.929 13 C 0.087 3.913 14 O -0.569 6.569 15 C -0.094 4.094 16 H 0.070 0.930 17 C -0.113 4.113 18 C 0.074 3.926 19 O -0.579 6.579 20 C 0.130 3.870 21 H 0.254 0.746 22 H 0.086 0.914 23 H 0.020 0.980 24 H 0.038 0.962 25 H 0.044 0.956 26 H 0.368 0.632 27 H 0.071 0.929 28 H 0.067 0.933 29 H 0.043 0.957 30 H 0.049 0.951 31 H 0.375 0.625 32 H 0.022 0.978 33 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.075 -12.623 -1.827 12.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.203 4.203 3 Si 0.741 3.259 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.357 4.357 8 H 0.093 0.907 9 N -0.323 5.323 10 C 0.045 3.955 11 C -0.130 4.130 12 H 0.089 0.911 13 C 0.009 3.991 14 O -0.373 6.373 15 C -0.114 4.114 16 H 0.088 0.912 17 C -0.151 4.151 18 C -0.003 4.003 19 O -0.384 6.384 20 C 0.004 3.996 21 H 0.064 0.936 22 H 0.105 0.895 23 H 0.038 0.962 24 H 0.056 0.944 25 H 0.062 0.938 26 H 0.214 0.786 27 H 0.089 0.911 28 H 0.085 0.915 29 H 0.061 0.939 30 H 0.068 0.932 31 H 0.221 0.779 32 H 0.040 0.960 33 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 0.936 -11.642 -2.049 11.858 hybrid contribution 0.588 0.186 0.283 0.679 sum 1.524 -11.457 -1.766 11.692 Atomic orbital electron populations 1.69926 1.05012 1.25299 1.55558 1.24916 0.95615 0.97929 1.01871 0.86138 0.78643 0.83457 0.77613 1.21525 1.21682 1.20617 1.18985 0.90707 0.82476 1.43561 0.90706 1.44992 1.13808 0.99894 1.73563 1.21493 0.86284 0.93978 0.93705 1.22299 0.91277 0.97882 1.01496 0.91081 1.22437 0.86985 0.93695 0.95954 1.86582 1.19578 1.48977 1.82160 1.22098 0.97403 0.92715 0.99223 0.91198 1.21702 0.97097 0.94863 1.01418 1.22304 0.97285 0.82999 0.97740 1.86468 1.38015 1.27320 1.86624 1.21743 0.96914 0.86993 0.93991 0.93607 0.89534 0.96249 0.94364 0.93781 0.78636 0.91051 0.91477 0.93920 0.93228 0.77938 0.95997 0.93748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.72 10.86 55.49 0.60 -27.12 16 2 C -0.01 -0.17 5.40 -17.43 -0.09 -0.27 16 3 Si 0.91 22.44 29.56 -169.99 -5.03 17.41 16 4 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.23 -6.55 10.35 -15.06 -0.16 -6.71 16 8 H 0.08 2.05 7.84 -52.49 -0.41 1.64 16 9 N -0.60 -15.83 3.38 -168.87 -0.57 -16.40 16 10 C 0.17 4.34 5.34 -2.41 -0.01 4.32 16 11 C -0.11 -2.19 3.33 -89.22 -0.30 -2.49 16 12 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 13 C 0.09 1.46 5.19 37.16 0.19 1.65 16 14 O -0.57 -9.79 13.55 -35.23 -0.48 -10.27 16 15 C -0.09 -1.66 3.08 -89.22 -0.27 -1.94 16 16 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 17 C -0.11 -1.68 3.79 -26.73 -0.10 -1.78 16 18 C 0.07 0.96 6.91 37.16 0.26 1.21 16 19 O -0.58 -7.20 13.66 -35.23 -0.48 -7.68 16 20 C 0.13 2.74 5.98 -2.41 -0.01 2.73 16 21 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 22 H 0.09 2.51 6.51 -51.93 -0.34 2.17 16 23 H 0.02 0.52 7.75 -51.93 -0.40 0.12 16 24 H 0.04 0.55 6.39 -51.93 -0.33 0.22 16 25 H 0.04 0.73 7.03 -51.93 -0.37 0.37 16 26 H 0.37 4.25 9.12 45.56 0.42 4.66 16 27 H 0.07 1.12 7.03 -51.93 -0.37 0.76 16 28 H 0.07 0.94 6.45 -51.93 -0.34 0.60 16 29 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.05 0.64 7.54 -51.93 -0.39 0.25 16 31 H 0.37 2.80 9.12 45.56 0.42 3.21 16 32 H 0.02 0.47 7.78 -51.93 -0.40 0.07 16 33 H 0.04 0.89 8.14 -51.93 -0.42 0.46 16 LS Contribution 265.17 15.07 4.00 4.00 Total: -1.00 -33.74 265.17 -5.80 -39.54 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -3.34 Total: 3.78 kcal Atomic # 6 Polarization: -2.76 SS G_CDS: -0.50 Total: -3.26 kcal Atomic # 7 Polarization: -43.55 SS G_CDS: 0.03 Total: -43.52 kcal Atomic # 8 Polarization: -16.99 SS G_CDS: -0.96 Total: -17.95 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.03 Total: 17.41 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -33.74 -5.80 -39.54 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176965546.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.252 kcal (2) G-P(sol) polarization free energy of solvation -33.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds