Wall clock time and date at job start Mon Mar 30 2020 02:40:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86798 * 120.00147 * 2 1 4 4 H 1.48497 * 109.47169 * 269.99982 * 3 2 1 5 5 H 1.48506 * 109.46932 * 29.99785 * 3 2 1 6 6 H 1.48502 * 109.47233 * 149.99565 * 3 2 1 7 7 C 1.38814 * 119.99933 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99891 * 189.10077 * 7 2 1 9 9 N 1.36935 * 120.00014 * 9.09996 * 7 2 1 10 10 C 1.48143 * 127.83847 * 15.56846 * 9 7 2 11 11 C 1.54389 * 104.61330 * 140.41497 * 10 9 7 12 12 H 1.08996 * 110.34332 * 264.99485 * 11 10 9 13 13 C 1.53009 * 110.34001 * 142.74236 * 11 10 9 14 14 O 1.42894 * 109.47204 * 69.46204 * 13 11 10 15 15 C 1.54279 * 104.96296 * 23.87052 * 11 10 9 16 16 H 1.08993 * 110.34649 * 241.12688 * 15 11 10 17 17 C 1.53000 * 110.34180 * 118.97040 * 15 11 10 18 18 C 1.53003 * 109.47005 * 176.47626 * 17 15 11 19 19 O 1.42907 * 109.47263 * 180.02562 * 18 17 15 20 20 C 1.48143 * 127.83934 * 195.57733 * 9 7 2 21 21 H 0.96995 * 119.99883 * 0.02562 * 1 2 3 22 22 H 1.09002 * 110.40547 * 21.63887 * 10 9 7 23 23 H 1.08993 * 110.41553 * 259.20115 * 10 9 7 24 24 H 1.08999 * 109.46891 * 189.46585 * 13 11 10 25 25 H 1.09006 * 109.47124 * 309.46138 * 13 11 10 26 26 H 0.96698 * 114.00082 * 179.97438 * 14 13 11 27 27 H 1.08994 * 109.47462 * 296.47331 * 17 15 11 28 28 H 1.09002 * 109.47296 * 56.48331 * 17 15 11 29 29 H 1.09002 * 109.47392 * 300.00169 * 18 17 15 30 30 H 1.08997 * 109.47394 * 60.00326 * 18 17 15 31 31 H 0.96695 * 113.99983 * 180.02562 * 19 18 17 32 32 H 1.08998 * 110.40944 * 100.79371 * 20 9 7 33 33 H 1.09006 * 110.40290 * 338.37053 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4401 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0800 -1.2080 0.1485 9 7 1.3385 -2.3807 -0.1865 10 6 -0.0342 -2.5711 -0.7101 11 6 0.0639 -3.8173 -1.6160 12 1 0.2219 -3.5206 -2.6529 13 6 -1.2031 -4.6662 -1.4918 14 8 -2.3008 -3.9739 -2.0898 15 6 1.2861 -4.5976 -1.0892 16 1 2.0445 -4.6842 -1.8672 17 6 0.8623 -5.9854 -0.6040 18 6 2.0995 -6.7732 -0.1684 19 8 1.7038 -8.0696 0.2842 20 6 1.8195 -3.7545 0.0890 21 1 -0.4850 0.8400 -0.0004 22 1 -0.3432 -1.7022 -1.2912 23 1 -0.7317 -2.7499 0.1081 24 1 -1.0536 -5.6186 -2.0004 25 1 -1.4177 -4.8466 -0.4384 26 1 -3.1388 -4.4547 -2.0480 27 1 0.1811 -5.8827 0.2406 28 1 0.3604 -6.5157 -1.4134 29 1 2.7809 -6.8759 -1.0130 30 1 2.6015 -6.2430 0.6409 31 1 2.4390 -8.6253 0.5769 32 1 1.4115 -4.1181 1.0321 33 1 2.9091 -3.7784 0.1109 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001176965546.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:10 Heat of formation + Delta-G solvation = -110.208533 kcal Electronic energy + Delta-G solvation = -15120.583519 eV Core-core repulsion = 12566.628357 eV Total energy + Delta-G solvation = -2553.955161 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.25090 -37.70953 -37.20403 -35.08986 -32.73477 -31.36982 -28.35148 -27.13519 -25.10630 -23.58204 -22.17349 -19.82718 -19.00794 -18.22044 -17.96221 -16.88125 -16.72251 -15.95906 -15.54778 -15.52198 -14.70610 -14.58296 -14.07393 -13.81517 -13.29672 -12.88510 -12.74043 -12.71059 -12.59750 -12.28666 -11.92111 -11.78827 -11.55705 -11.44264 -11.17245 -10.88154 -10.73954 -10.52996 -8.90765 -7.89711 -5.27925 1.44410 1.47561 1.56118 2.48004 3.27557 3.31535 3.39117 3.74703 3.87612 4.03348 4.17030 4.27151 4.42181 4.50337 4.57766 4.67932 4.70735 4.73118 4.91443 4.95369 5.04981 5.17519 5.30234 5.45704 5.48124 5.59773 5.73020 6.19856 6.96539 6.99599 7.03895 7.69557 8.48588 9.23264 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.032298 B = 0.008768 C = 0.007146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.712317 B = 3192.517117 C = 3917.369127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.068 4.068 3 Si 0.982 3.018 4 H -0.285 1.285 5 H -0.295 1.295 6 H -0.264 1.264 7 C -0.243 4.243 8 H 0.084 0.916 9 N -0.626 5.626 10 C 0.179 3.821 11 C -0.105 4.105 12 H 0.061 0.939 13 C 0.094 3.906 14 O -0.595 6.595 15 C -0.077 4.077 16 H 0.085 0.915 17 C -0.107 4.107 18 C 0.078 3.922 19 O -0.593 6.593 20 C 0.127 3.873 21 H 0.248 0.752 22 H 0.040 0.960 23 H -0.008 1.008 24 H 0.075 0.925 25 H 0.044 0.956 26 H 0.393 0.607 27 H 0.060 0.940 28 H 0.084 0.916 29 H 0.061 0.939 30 H 0.047 0.953 31 H 0.397 0.603 32 H 0.021 0.979 33 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.248 -14.387 -2.267 14.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.261 4.261 3 Si 0.809 3.191 4 H -0.212 1.212 5 H -0.221 1.221 6 H -0.188 1.188 7 C -0.371 4.371 8 H 0.101 0.899 9 N -0.350 5.350 10 C 0.053 3.947 11 C -0.125 4.125 12 H 0.080 0.920 13 C 0.016 3.984 14 O -0.403 6.403 15 C -0.097 4.097 16 H 0.104 0.896 17 C -0.144 4.144 18 C 0.000 4.000 19 O -0.402 6.402 20 C 0.002 3.998 21 H 0.057 0.943 22 H 0.059 0.941 23 H 0.010 0.990 24 H 0.093 0.907 25 H 0.062 0.938 26 H 0.242 0.758 27 H 0.078 0.922 28 H 0.102 0.898 29 H 0.079 0.921 30 H 0.065 0.935 31 H 0.246 0.754 32 H 0.038 0.962 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.128 -13.469 -2.481 13.860 hybrid contribution 0.212 0.677 0.450 0.840 sum 2.340 -12.792 -2.031 13.162 Atomic orbital electron populations 1.70150 1.06719 1.25604 1.57183 1.25828 0.96481 1.01565 1.02239 0.85038 0.77786 0.78708 0.77551 1.21225 1.22110 1.18841 1.19440 0.91403 0.83736 1.42557 0.89876 1.45332 1.14147 1.01439 1.74123 1.21233 0.85630 0.94758 0.93061 1.22188 0.94456 0.96385 0.99458 0.92013 1.22357 0.85463 0.94038 0.96508 1.86523 1.21133 1.50461 1.82192 1.21932 0.96377 0.93475 0.97951 0.89631 1.21587 0.98046 0.93267 1.01526 1.22177 0.96243 0.83158 0.98390 1.86401 1.39760 1.27241 1.86780 1.21942 0.97715 0.84813 0.95330 0.94296 0.94127 0.99005 0.90690 0.93816 0.75769 0.92154 0.89803 0.92075 0.93519 0.75380 0.96164 0.92526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.95 10.86 21.65 0.24 -59.72 16 2 C -0.07 -3.99 5.40 84.86 0.46 -3.53 16 3 Si 0.98 46.85 29.56 68.60 2.03 48.87 16 4 H -0.29 -13.38 7.11 99.48 0.71 -12.68 16 5 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 6 H -0.26 -11.74 7.11 99.48 0.71 -11.04 16 7 C -0.24 -14.05 10.35 84.03 0.87 -13.18 16 8 H 0.08 4.54 7.84 -2.91 -0.02 4.52 16 9 N -0.63 -33.63 3.38 -688.17 -2.33 -35.96 16 10 C 0.18 9.40 5.34 86.54 0.46 9.86 16 11 C -0.10 -4.14 3.33 -9.89 -0.03 -4.17 16 12 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 13 C 0.09 2.99 5.19 71.99 0.37 3.36 16 14 O -0.60 -19.92 13.55 -148.98 -2.02 -21.94 16 15 C -0.08 -2.58 3.08 -9.89 -0.03 -2.61 16 16 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 17 C -0.11 -2.83 3.79 30.60 0.12 -2.71 16 18 C 0.08 1.73 6.91 71.98 0.50 2.23 16 19 O -0.59 -12.66 13.66 -148.98 -2.04 -14.70 16 20 C 0.13 5.25 5.98 86.53 0.52 5.77 16 21 H 0.25 15.17 8.31 -92.71 -0.77 14.40 16 22 H 0.04 2.47 6.51 -2.39 -0.02 2.46 16 23 H -0.01 -0.45 7.75 -2.39 -0.02 -0.47 16 24 H 0.08 1.88 6.39 -2.39 -0.02 1.86 16 25 H 0.04 1.40 7.03 -2.38 -0.02 1.38 16 26 H 0.39 8.42 9.12 -74.06 -0.68 7.74 16 27 H 0.06 1.75 7.03 -2.39 -0.02 1.74 16 28 H 0.08 1.98 6.45 -2.39 -0.02 1.96 16 29 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.05 1.06 7.54 -2.39 -0.02 1.04 16 31 H 0.40 4.53 9.12 -74.06 -0.68 3.85 16 32 H 0.02 0.85 7.78 -2.39 -0.02 0.83 16 33 H 0.06 2.17 8.14 -2.38 -0.02 2.15 16 Total: -1.00 -74.70 265.17 -1.12 -75.82 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -0.24 Total: 12.60 kcal Atomic # 6 Polarization: -8.21 SS G_CDS: 3.23 Total: -4.98 kcal Atomic # 7 Polarization: -93.58 SS G_CDS: -2.09 Total: -95.67 kcal Atomic # 8 Polarization: -32.58 SS G_CDS: -4.05 Total: -36.64 kcal Atomic # 14 Polarization: 46.85 SS G_CDS: 2.03 Total: 48.87 kcal Total: -74.70 -1.12 -75.82 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176965546.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.388 kcal (2) G-P(sol) polarization free energy of solvation -74.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds