Wall clock time and date at job start Mon Mar 30 2020 03:17:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 110.28714 * 2 1 4 4 C 1.54380 * 110.32572 * 122.23402 * 2 1 3 5 5 N 1.48559 * 104.59665 * 142.74999 * 4 2 1 6 6 C 1.46897 * 110.99812 * 200.96279 * 5 4 2 7 7 C 1.53005 * 109.46748 * 170.00288 * 6 5 4 8 8 H 1.08994 * 109.47362 * 59.99857 * 7 6 5 9 9 O 1.42899 * 109.46796 * 299.99325 * 7 6 5 10 10 C 1.50701 * 109.46727 * 179.97438 * 7 6 5 11 11 H 1.08002 * 120.00512 * 359.97438 * 10 7 6 12 12 C 1.37880 * 119.99943 * 179.97438 * 10 7 6 13 13 N 1.31507 * 120.00373 * 179.97438 * 12 10 7 14 14 Si 1.86809 * 119.99840 * 0.02562 * 12 10 7 15 15 H 1.48497 * 109.47137 * 89.99602 * 14 12 10 16 16 H 1.48496 * 109.46644 * 210.00111 * 14 12 10 17 17 H 1.48500 * 109.46632 * 329.99700 * 14 12 10 18 18 C 1.48563 * 104.21883 * 320.51822 * 5 4 2 19 19 C 1.54259 * 110.32487 * 237.87281 * 2 1 3 20 20 H 1.08999 * 110.32743 * 122.10239 * 19 2 1 21 21 O 1.42905 * 110.32232 * 359.97438 * 19 2 1 22 22 H 1.08996 * 109.46910 * 182.12842 * 1 2 3 23 23 H 1.09001 * 109.46870 * 302.12682 * 1 2 3 24 24 H 1.08994 * 109.46908 * 62.12800 * 1 2 3 25 25 H 1.09007 * 110.40962 * 261.53093 * 4 2 1 26 26 H 1.08998 * 110.40978 * 23.84684 * 4 2 1 27 27 H 1.09000 * 109.46846 * 289.99427 * 6 5 4 28 28 H 1.08994 * 109.47306 * 50.00110 * 6 5 4 29 29 H 0.96701 * 113.99981 * 300.00308 * 9 7 6 30 30 H 0.96996 * 120.00309 * 180.02562 * 13 12 10 31 31 H 1.09005 * 110.41094 * 280.70033 * 18 5 4 32 32 H 1.09004 * 110.40946 * 158.26169 * 18 5 4 33 33 H 0.96705 * 113.99788 * 180.02562 * 21 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9080 1.0224 0.0000 4 6 2.0663 -0.7722 1.2246 5 7 3.2695 -1.4835 0.7211 6 6 3.6069 -2.6231 1.5844 7 6 4.6852 -3.4728 0.9089 8 1 5.5754 -2.8661 0.7437 9 8 4.1967 -3.9534 -0.3450 10 6 5.0317 -4.6416 1.7949 11 1 4.5332 -4.7658 2.7448 12 6 5.9854 -5.5526 1.3926 13 7 6.2883 -6.5723 2.1659 14 14 6.8483 -5.3375 -0.2502 15 1 8.0705 -4.5150 -0.0634 16 1 7.2251 -6.6689 -0.7893 17 1 5.9350 -4.6578 -1.2037 18 6 2.8807 -1.9415 -0.6376 19 6 2.0659 -0.7693 -1.2250 20 1 2.7067 -0.1245 -1.8264 21 8 0.9816 -1.2648 -2.0131 22 1 -0.3633 -1.0269 0.0382 23 1 -0.3633 0.5465 0.8703 24 1 -0.3633 0.4804 -0.9084 25 1 2.3394 -0.0797 2.0209 26 1 1.3222 -1.4847 1.5803 27 1 3.9795 -2.2565 2.5409 28 1 2.7166 -3.2299 1.7496 29 1 3.4037 -4.5023 -0.2740 30 1 6.9594 -7.2129 1.8831 31 1 2.2649 -2.8387 -0.5746 32 1 3.7671 -2.1296 -1.2434 33 1 1.2587 -1.7579 -2.7975 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333157648.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:17 Heat of formation + Delta-G solvation = -92.329198 kcal Electronic energy + Delta-G solvation = -15308.236645 eV Core-core repulsion = 12755.056789 eV Total energy + Delta-G solvation = -2553.179855 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.36790 -36.65964 -35.09171 -32.37783 -32.24735 -29.38239 -27.68259 -25.90540 -23.86740 -21.42523 -20.43418 -19.56039 -17.36012 -17.29013 -15.68861 -14.97435 -14.62462 -14.46673 -14.17328 -14.00207 -13.53043 -12.86375 -12.71368 -12.24548 -12.20812 -11.82910 -11.62000 -11.22033 -10.94573 -10.86520 -10.78248 -10.32845 -10.24865 -9.94418 -9.68568 -9.05877 -8.63685 -8.17904 -8.02497 -6.14784 -4.26278 3.38342 3.47232 3.71971 4.16898 4.51579 4.67302 4.75888 4.92615 5.12141 5.18894 5.49613 5.56757 5.68651 5.75899 5.79628 5.90116 6.02157 6.05228 6.11613 6.22843 6.30613 6.44621 6.51402 6.69864 7.19749 7.28290 7.45270 7.67811 7.75382 8.25249 8.79019 8.95443 9.49469 10.95872 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.052564 B = 0.008167 C = 0.007493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.559804 B = 3427.442686 C = 3735.751894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.091 4.091 3 H 0.080 0.920 4 C 0.033 3.967 5 N -0.509 5.509 6 C 0.030 3.970 7 C 0.197 3.803 8 H 0.063 0.937 9 O -0.579 6.579 10 C -0.565 4.565 11 H 0.071 0.929 12 C 0.083 3.917 13 N -0.893 5.893 14 Si 0.875 3.125 15 H -0.287 1.287 16 H -0.297 1.297 17 H -0.218 1.218 18 C 0.019 3.981 19 C 0.091 3.909 20 H 0.060 0.940 21 O -0.564 6.564 22 H 0.057 0.943 23 H 0.047 0.953 24 H 0.057 0.943 25 H 0.076 0.924 26 H 0.043 0.957 27 H 0.076 0.924 28 H 0.030 0.970 29 H 0.352 0.648 30 H 0.265 0.735 31 H 0.052 0.948 32 H 0.099 0.901 33 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.997 10.942 -6.498 15.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.110 4.110 3 H 0.098 0.902 4 C -0.095 4.095 5 N -0.234 5.234 6 C -0.098 4.098 7 C 0.139 3.861 8 H 0.080 0.920 9 O -0.385 6.385 10 C -0.602 4.602 11 H 0.089 0.911 12 C -0.121 4.121 13 N -0.530 5.530 14 Si 0.701 3.299 15 H -0.214 1.214 16 H -0.224 1.224 17 H -0.140 1.140 18 C -0.109 4.109 19 C 0.032 3.968 20 H 0.078 0.922 21 O -0.369 6.369 22 H 0.076 0.924 23 H 0.066 0.934 24 H 0.076 0.924 25 H 0.094 0.906 26 H 0.061 0.939 27 H 0.094 0.906 28 H 0.049 0.951 29 H 0.199 0.801 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.117 0.883 33 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -8.263 11.766 -6.227 15.668 hybrid contribution -0.154 -1.256 -0.597 1.399 sum -8.417 10.510 -6.824 15.096 Atomic orbital electron populations 1.21483 0.94101 1.02064 1.00785 1.21934 0.96495 0.98960 0.93564 0.90172 1.23234 0.92028 0.97451 0.96795 1.65437 1.31203 1.24244 1.02524 1.22947 0.99294 0.90677 0.96835 1.19780 0.91754 0.92543 0.82001 0.91969 1.86740 1.47496 1.70383 1.33927 1.21476 1.23786 1.08934 1.06040 0.91081 1.25005 0.95496 0.94166 0.97454 1.69954 1.31975 1.13420 1.37651 0.86975 0.79691 0.77418 0.85808 1.21405 1.22381 1.14011 1.23926 0.99746 0.95303 0.91939 1.22754 0.87213 0.94947 0.91889 0.92182 1.86506 1.34064 1.75215 1.41151 0.92409 0.93443 0.92428 0.90571 0.93919 0.90591 0.95147 0.80102 0.92560 0.92993 0.88255 0.77800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.53 8.16 37.16 0.30 -1.23 16 2 C -0.09 -1.19 3.65 -89.23 -0.33 -1.52 16 3 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 4 C 0.03 0.49 6.04 -2.18 -0.01 0.48 16 5 N -0.51 -8.90 5.49 -229.97 -1.26 -10.16 16 6 C 0.03 0.61 4.85 -3.82 -0.02 0.59 16 7 C 0.20 4.53 2.43 -27.88 -0.07 4.47 16 8 H 0.06 1.52 7.57 -51.93 -0.39 1.13 16 9 O -0.58 -12.42 6.47 -35.23 -0.23 -12.65 16 10 C -0.56 -15.59 9.34 -34.44 -0.32 -15.91 16 11 H 0.07 2.13 7.99 -52.49 -0.42 1.71 16 12 C 0.08 2.39 5.47 -17.82 -0.10 2.29 16 13 N -0.89 -27.23 13.96 55.43 0.77 -26.46 16 14 Si 0.87 21.71 26.99 -169.99 -4.59 17.12 16 15 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 16 H -0.30 -7.44 7.11 56.52 0.40 -7.03 16 17 H -0.22 -5.20 5.30 56.52 0.30 -4.90 16 18 C 0.02 0.31 4.38 -2.18 -0.01 0.30 16 19 C 0.09 1.24 4.40 -25.35 -0.11 1.13 16 20 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 21 O -0.56 -7.14 11.55 -35.23 -0.41 -7.54 16 22 H 0.06 0.76 7.85 -51.93 -0.41 0.36 16 23 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.06 0.68 7.90 -51.93 -0.41 0.27 16 25 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 26 H 0.04 0.65 7.51 -51.93 -0.39 0.26 16 27 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 28 H 0.03 0.61 7.88 -51.93 -0.41 0.20 16 29 H 0.35 6.90 8.34 45.56 0.38 7.28 16 30 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 31 H 0.05 0.87 6.81 -51.93 -0.35 0.52 16 32 H 0.10 1.75 6.79 -51.93 -0.35 1.40 16 33 H 0.38 3.40 9.12 45.56 0.42 3.82 16 LS Contribution 259.47 15.07 3.91 3.91 Total: -1.00 -30.85 259.47 -6.16 -37.00 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -3.69 Total: 8.19 kcal Atomic # 6 Polarization: -8.74 SS G_CDS: -0.66 Total: -9.40 kcal Atomic # 7 Polarization: -36.13 SS G_CDS: -0.49 Total: -36.62 kcal Atomic # 8 Polarization: -19.56 SS G_CDS: -0.63 Total: -20.20 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.59 Total: 17.12 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -30.85 -6.16 -37.00 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333157648.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.328 kcal (2) G-P(sol) polarization free energy of solvation -30.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds