Wall clock time and date at job start Mon Mar 30 2020 03:17:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 110.28714 * 2 1 4 4 C 1.54380 * 110.32572 * 122.23402 * 2 1 3 5 5 N 1.48559 * 104.59665 * 142.74999 * 4 2 1 6 6 C 1.46897 * 110.99812 * 200.96279 * 5 4 2 7 7 C 1.53005 * 109.46748 * 170.00288 * 6 5 4 8 8 H 1.08994 * 109.47362 * 59.99857 * 7 6 5 9 9 O 1.42899 * 109.46796 * 299.99325 * 7 6 5 10 10 C 1.50701 * 109.46727 * 179.97438 * 7 6 5 11 11 H 1.08002 * 120.00512 * 359.97438 * 10 7 6 12 12 C 1.37880 * 119.99943 * 179.97438 * 10 7 6 13 13 N 1.31507 * 120.00373 * 179.97438 * 12 10 7 14 14 Si 1.86809 * 119.99840 * 0.02562 * 12 10 7 15 15 H 1.48497 * 109.47137 * 89.99602 * 14 12 10 16 16 H 1.48496 * 109.46644 * 210.00111 * 14 12 10 17 17 H 1.48500 * 109.46632 * 329.99700 * 14 12 10 18 18 C 1.48563 * 104.21883 * 320.51822 * 5 4 2 19 19 C 1.54259 * 110.32487 * 237.87281 * 2 1 3 20 20 H 1.08999 * 110.32743 * 122.10239 * 19 2 1 21 21 O 1.42905 * 110.32232 * 359.97438 * 19 2 1 22 22 H 1.08996 * 109.46910 * 182.12842 * 1 2 3 23 23 H 1.09001 * 109.46870 * 302.12682 * 1 2 3 24 24 H 1.08994 * 109.46908 * 62.12800 * 1 2 3 25 25 H 1.09007 * 110.40962 * 261.53093 * 4 2 1 26 26 H 1.08998 * 110.40978 * 23.84684 * 4 2 1 27 27 H 1.09000 * 109.46846 * 289.99427 * 6 5 4 28 28 H 1.08994 * 109.47306 * 50.00110 * 6 5 4 29 29 H 0.96701 * 113.99981 * 300.00308 * 9 7 6 30 30 H 0.96996 * 120.00309 * 180.02562 * 13 12 10 31 31 H 1.09005 * 110.41094 * 280.70033 * 18 5 4 32 32 H 1.09004 * 110.40946 * 158.26169 * 18 5 4 33 33 H 0.96705 * 113.99788 * 180.02562 * 21 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9080 1.0224 0.0000 4 6 2.0663 -0.7722 1.2246 5 7 3.2695 -1.4835 0.7211 6 6 3.6069 -2.6231 1.5844 7 6 4.6852 -3.4728 0.9089 8 1 5.5754 -2.8661 0.7437 9 8 4.1967 -3.9534 -0.3450 10 6 5.0317 -4.6416 1.7949 11 1 4.5332 -4.7658 2.7448 12 6 5.9854 -5.5526 1.3926 13 7 6.2883 -6.5723 2.1659 14 14 6.8483 -5.3375 -0.2502 15 1 8.0705 -4.5150 -0.0634 16 1 7.2251 -6.6689 -0.7893 17 1 5.9350 -4.6578 -1.2037 18 6 2.8807 -1.9415 -0.6376 19 6 2.0659 -0.7693 -1.2250 20 1 2.7067 -0.1245 -1.8264 21 8 0.9816 -1.2648 -2.0131 22 1 -0.3633 -1.0269 0.0382 23 1 -0.3633 0.5465 0.8703 24 1 -0.3633 0.4804 -0.9084 25 1 2.3394 -0.0797 2.0209 26 1 1.3222 -1.4847 1.5803 27 1 3.9795 -2.2565 2.5409 28 1 2.7166 -3.2299 1.7496 29 1 3.4037 -4.5023 -0.2740 30 1 6.9594 -7.2129 1.8831 31 1 2.2649 -2.8387 -0.5746 32 1 3.7671 -2.1296 -1.2434 33 1 1.2587 -1.7579 -2.7975 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333157648.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:17 Heat of formation + Delta-G solvation = -118.803903 kcal Electronic energy + Delta-G solvation = -15309.384674 eV Core-core repulsion = 12755.056789 eV Total energy + Delta-G solvation = -2554.327885 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.62222 -38.20486 -36.36310 -34.47418 -33.55467 -30.95012 -29.11399 -27.36184 -25.35201 -22.94424 -21.97775 -20.70973 -19.36300 -18.36544 -17.06870 -16.81151 -16.33669 -16.14530 -15.42934 -15.31053 -14.86777 -14.59306 -14.23632 -13.67186 -13.41950 -13.22033 -12.97697 -12.91814 -12.58461 -12.51730 -11.94747 -11.90521 -11.70183 -11.36520 -11.11581 -10.84736 -10.77179 -9.95536 -9.41568 -8.37038 -6.52508 1.40761 1.45266 1.74233 2.42822 2.98834 3.00892 3.53872 3.65336 3.79828 3.96202 4.09543 4.35473 4.37065 4.42575 4.55952 4.67565 4.76426 4.84919 4.95210 4.96549 5.13071 5.23888 5.28261 5.38417 5.47402 5.51001 5.93636 6.05964 6.10642 6.60031 6.92025 7.10751 7.29426 8.77223 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.052564 B = 0.008167 C = 0.007493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.559804 B = 3427.442686 C = 3735.751894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.089 4.089 3 H 0.096 0.904 4 C 0.032 3.968 5 N -0.517 5.517 6 C 0.043 3.957 7 C 0.208 3.792 8 H 0.055 0.945 9 O -0.573 6.573 10 C -0.568 4.568 11 H 0.034 0.966 12 C 0.028 3.972 13 N -0.940 5.940 14 Si 0.943 3.057 15 H -0.287 1.287 16 H -0.299 1.299 17 H -0.200 1.200 18 C 0.020 3.980 19 C 0.099 3.901 20 H 0.073 0.927 21 O -0.570 6.570 22 H 0.042 0.958 23 H 0.062 0.938 24 H 0.061 0.939 25 H 0.087 0.913 26 H 0.037 0.963 27 H 0.069 0.931 28 H 0.025 0.975 29 H 0.363 0.637 30 H 0.267 0.733 31 H 0.043 0.957 32 H 0.086 0.914 33 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.659 12.631 -8.211 17.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.108 4.108 3 H 0.114 0.886 4 C -0.096 4.096 5 N -0.242 5.242 6 C -0.085 4.085 7 C 0.150 3.850 8 H 0.073 0.927 9 O -0.380 6.380 10 C -0.606 4.606 11 H 0.052 0.948 12 C -0.172 4.172 13 N -0.579 5.579 14 Si 0.767 3.233 15 H -0.214 1.214 16 H -0.226 1.226 17 H -0.122 1.122 18 C -0.108 4.108 19 C 0.040 3.960 20 H 0.091 0.909 21 O -0.377 6.377 22 H 0.061 0.939 23 H 0.081 0.919 24 H 0.080 0.920 25 H 0.105 0.895 26 H 0.055 0.945 27 H 0.088 0.912 28 H 0.043 0.957 29 H 0.211 0.789 30 H 0.076 0.924 31 H 0.061 0.939 32 H 0.104 0.896 33 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -8.950 13.463 -7.954 18.017 hybrid contribution -0.016 -1.786 -0.013 1.786 sum -8.965 11.677 -7.967 16.739 Atomic orbital electron populations 1.21421 0.93208 1.01383 1.01747 1.21983 0.97186 0.99366 0.92283 0.88569 1.23315 0.90808 0.97384 0.98048 1.65385 1.33050 1.22911 1.02820 1.22626 0.97989 0.91185 0.96719 1.19473 0.92699 0.91037 0.81779 0.92747 1.86677 1.48158 1.70656 1.32482 1.21803 1.23049 1.10356 1.05376 0.94777 1.25896 0.96392 0.93822 1.01084 1.70082 1.33260 1.14768 1.39835 0.85929 0.78548 0.77175 0.81627 1.21393 1.22566 1.12175 1.23873 0.99457 0.96326 0.91131 1.22637 0.87248 0.93857 0.92308 0.90910 1.86485 1.33831 1.75490 1.41911 0.93916 0.91941 0.91968 0.89486 0.94484 0.91249 0.95715 0.78918 0.92407 0.93872 0.89599 0.75975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.55 8.16 71.98 0.59 -1.96 16 2 C -0.09 -2.08 3.65 -9.90 -0.04 -2.11 16 3 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 4 C 0.03 0.89 6.04 86.45 0.52 1.41 16 5 N -0.52 -17.20 5.49 -881.48 -4.84 -22.04 16 6 C 0.04 1.71 4.85 86.31 0.42 2.13 16 7 C 0.21 9.46 2.43 29.85 0.07 9.53 16 8 H 0.05 2.60 7.57 -2.39 -0.02 2.58 16 9 O -0.57 -23.59 6.47 -148.98 -0.96 -24.55 16 10 C -0.57 -31.82 9.34 25.60 0.24 -31.58 16 11 H 0.03 2.11 7.99 -2.91 -0.02 2.09 16 12 C 0.03 1.60 5.47 84.66 0.46 2.06 16 13 N -0.94 -58.50 13.96 21.45 0.30 -58.20 16 14 Si 0.94 44.80 26.99 68.60 1.85 46.65 16 15 H -0.29 -13.59 7.11 99.48 0.71 -12.89 16 16 H -0.30 -14.19 7.11 99.48 0.71 -13.49 16 17 H -0.20 -8.85 5.30 99.48 0.53 -8.32 16 18 C 0.02 0.62 4.38 86.45 0.38 0.99 16 19 C 0.10 2.41 4.40 31.49 0.14 2.54 16 20 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 21 O -0.57 -12.76 11.55 -148.98 -1.72 -14.48 16 22 H 0.04 1.03 7.85 -2.39 -0.02 1.01 16 23 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 24 H 0.06 1.27 7.90 -2.39 -0.02 1.26 16 25 H 0.09 2.19 8.14 -2.38 -0.02 2.17 16 26 H 0.04 1.06 7.51 -2.39 -0.02 1.05 16 27 H 0.07 2.79 8.14 -2.39 -0.02 2.77 16 28 H 0.02 0.99 7.88 -2.39 -0.02 0.97 16 29 H 0.36 13.67 8.34 -74.06 -0.62 13.05 16 30 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 31 H 0.04 1.37 6.81 -2.38 -0.02 1.36 16 32 H 0.09 2.84 6.79 -2.38 -0.02 2.82 16 33 H 0.39 5.95 9.12 -74.05 -0.68 5.28 16 Total: -1.00 -65.46 259.47 -2.96 -68.42 By element: Atomic # 1 Polarization: 21.57 SS G_CDS: -0.37 Total: 21.20 kcal Atomic # 6 Polarization: -19.77 SS G_CDS: 2.78 Total: -16.99 kcal Atomic # 7 Polarization: -75.70 SS G_CDS: -4.54 Total: -80.24 kcal Atomic # 8 Polarization: -36.35 SS G_CDS: -2.68 Total: -39.04 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 1.85 Total: 46.65 kcal Total: -65.46 -2.96 -68.42 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333157648.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.386 kcal (2) G-P(sol) polarization free energy of solvation -65.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds