Wall clock time and date at job start Mon Mar 30 2020 02:45:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86806 * 119.99726 * 2 1 4 4 H 1.48502 * 109.46563 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46947 * 299.99561 * 3 2 1 6 6 H 1.48494 * 109.47178 * 60.00147 * 3 2 1 7 7 C 1.37875 * 119.99957 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99650 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00220 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.46753 * 299.99720 * 9 7 2 11 11 O 1.42899 * 109.46932 * 59.99451 * 9 7 2 12 12 C 1.52992 * 109.47482 * 179.97438 * 9 7 2 13 13 C 1.52997 * 109.47482 * 174.99860 * 12 9 7 14 14 N 1.46899 * 109.47254 * 179.97438 * 13 12 9 15 15 C 1.47013 * 111.00046 * 293.63666 * 14 13 12 16 16 C 1.53099 * 109.25643 * 177.60657 * 15 14 13 17 17 O 1.43014 * 109.25885 * 56.84790 * 16 15 14 18 18 C 1.43018 * 113.73978 * 301.33101 * 17 16 15 19 19 C 1.47011 * 111.00014 * 169.99684 * 14 13 12 20 20 H 0.96998 * 119.99888 * 0.02562 * 1 2 3 21 21 H 0.96705 * 114.00115 * 60.00715 * 11 9 7 22 22 H 1.09002 * 109.47103 * 54.99613 * 12 9 7 23 23 H 1.08998 * 109.46862 * 295.00425 * 12 9 7 24 24 H 1.09002 * 109.47153 * 59.99783 * 13 12 9 25 25 H 1.09001 * 109.46832 * 299.99974 * 13 12 9 26 26 H 1.08995 * 109.50757 * 297.54095 * 15 14 13 27 27 H 1.09000 * 109.50677 * 57.67521 * 15 14 13 28 28 H 1.08994 * 109.50770 * 296.91494 * 16 15 14 29 29 H 1.09003 * 109.54264 * 176.80054 * 16 15 14 30 30 H 1.09001 * 109.50030 * 298.73460 * 18 17 16 31 31 H 1.09002 * 109.54311 * 178.62809 * 18 17 16 32 32 H 1.08999 * 109.50799 * 302.32969 * 19 14 13 33 33 H 1.09004 * 109.50624 * 62.41992 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6241 -2.5567 0.8903 11 8 0.4299 -2.5750 -1.1665 12 6 2.2452 -3.6620 0.0005 13 6 1.4845 -4.9835 0.1263 14 7 2.4390 -6.1001 0.1257 15 6 3.1142 -6.2153 -1.1752 16 6 4.1402 -7.3500 -1.1128 17 8 3.4809 -8.5618 -0.7358 18 6 2.8132 -8.4852 0.5267 19 6 1.7739 -7.3620 0.4810 20 1 -0.4850 0.8400 -0.0004 21 1 0.9223 -2.5299 -1.9976 22 1 2.9294 -3.5551 0.8423 23 1 2.8115 -3.6559 -0.9308 24 1 0.8003 -5.0904 -0.7155 25 1 0.9183 -4.9895 1.0577 26 1 2.3783 -6.4321 -1.9493 27 1 3.6213 -5.2785 -1.4063 28 1 4.9061 -7.1080 -0.3761 29 1 4.6033 -7.4769 -2.0913 30 1 3.5407 -8.2763 1.3110 31 1 2.3161 -9.4329 0.7343 32 1 1.3025 -7.2623 1.4587 33 1 1.0159 -7.5969 -0.2664 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001535788514.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:11 Heat of formation + Delta-G solvation = -99.611389 kcal Electronic energy + Delta-G solvation = -14824.935657 eV Core-core repulsion = 12271.440022 eV Total energy + Delta-G solvation = -2553.495635 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.44398 -36.58047 -35.10111 -32.10922 -31.23684 -30.61864 -27.48930 -25.40315 -23.95840 -22.36450 -20.40095 -19.96144 -16.93420 -16.33553 -16.07111 -15.13833 -15.00121 -14.75300 -14.54462 -14.16293 -13.80463 -13.60657 -12.53122 -12.36493 -11.95128 -11.74104 -11.35822 -11.22891 -11.04286 -10.93838 -10.56863 -10.54278 -10.02112 -9.96883 -9.61334 -8.98851 -8.56620 -8.20042 -8.06188 -5.99851 -4.17537 3.27080 3.35300 3.38923 3.81323 4.04668 4.40470 4.93252 5.08813 5.11273 5.19458 5.27372 5.32498 5.56812 5.60518 5.74683 5.82050 5.88735 5.93258 6.05054 6.25705 6.34065 6.59073 6.65835 7.06687 7.08872 7.25148 7.31339 7.74709 7.86941 8.21005 8.85935 9.38865 9.59666 11.04575 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.062507 B = 0.005969 C = 0.005740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 447.843681 B = 4689.968209 C = 4876.896673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.077 3.923 3 Si 0.888 3.112 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.569 4.569 8 H 0.056 0.944 9 C 0.227 3.773 10 H 0.055 0.945 11 O -0.568 6.568 12 C -0.134 4.134 13 C 0.059 3.941 14 N -0.539 5.539 15 C 0.016 3.984 16 C 0.064 3.936 17 O -0.391 6.391 18 C 0.065 3.935 19 C 0.016 3.984 20 H 0.259 0.741 21 H 0.343 0.657 22 H 0.063 0.937 23 H 0.049 0.951 24 H 0.038 0.962 25 H 0.069 0.931 26 H 0.040 0.960 27 H 0.091 0.909 28 H 0.058 0.942 29 H 0.095 0.905 30 H 0.058 0.942 31 H 0.094 0.906 32 H 0.083 0.917 33 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.507 -13.098 -0.598 14.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.128 4.128 3 Si 0.716 3.284 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.607 4.607 8 H 0.074 0.926 9 C 0.169 3.831 10 H 0.072 0.928 11 O -0.371 6.371 12 C -0.172 4.172 13 C -0.068 4.068 14 N -0.264 5.264 15 C -0.113 4.113 16 C -0.013 4.013 17 O -0.309 6.309 18 C -0.012 4.012 19 C -0.113 4.113 20 H 0.069 0.931 21 H 0.187 0.813 22 H 0.082 0.918 23 H 0.067 0.933 24 H 0.056 0.944 25 H 0.087 0.913 26 H 0.058 0.942 27 H 0.109 0.891 28 H 0.076 0.924 29 H 0.113 0.887 30 H 0.076 0.924 31 H 0.112 0.888 32 H 0.102 0.898 33 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 5.213 -13.112 0.118 14.111 hybrid contribution 0.260 1.183 -0.761 1.431 sum 5.473 -11.929 -0.643 13.140 Atomic orbital electron populations 1.70090 1.05961 1.26271 1.47464 1.25067 0.94693 0.99179 0.93906 0.86623 0.80249 0.83882 0.77671 1.19702 1.20920 1.20878 1.21724 0.93217 0.91538 1.54234 0.92567 1.19378 0.87989 0.89848 0.85856 0.92756 1.86551 1.38677 1.96374 1.15448 1.22357 0.99712 0.94037 1.01138 1.22219 0.93333 0.90259 1.00942 1.62322 1.31196 1.03736 1.29176 1.22801 0.97656 1.00070 0.90738 1.22684 0.94101 0.83826 1.00686 1.87938 1.70259 1.34975 1.37748 1.22647 0.94399 0.98188 0.85989 1.22760 0.96257 0.90625 1.01621 0.93091 0.81322 0.91834 0.93265 0.94384 0.91258 0.94223 0.89062 0.92380 0.88735 0.92414 0.88836 0.89816 0.94274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.69 12.84 55.43 0.71 -24.97 16 2 C 0.08 2.18 5.40 -17.82 -0.10 2.08 16 3 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 4 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.57 -15.70 8.76 -34.44 -0.30 -16.00 16 8 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 9 C 0.23 5.74 2.82 -27.89 -0.08 5.66 16 10 H 0.05 1.51 8.14 -51.93 -0.42 1.09 16 11 O -0.57 -14.57 12.27 -35.23 -0.43 -15.00 16 12 C -0.13 -2.73 4.77 -26.74 -0.13 -2.86 16 13 C 0.06 1.06 4.85 -3.83 -0.02 1.04 16 14 N -0.54 -8.36 4.73 -234.31 -1.11 -9.47 16 15 C 0.02 0.22 5.44 -3.71 -0.02 0.20 16 16 C 0.06 0.79 7.01 37.21 0.26 1.05 16 17 O -0.39 -5.26 10.83 -35.23 -0.38 -5.64 16 18 C 0.06 0.76 7.01 37.21 0.26 1.02 16 19 C 0.02 0.21 5.64 -3.71 -0.02 0.19 16 20 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 21 H 0.34 7.82 9.04 45.56 0.41 8.23 16 22 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 23 H 0.05 0.96 6.51 -51.93 -0.34 0.63 16 24 H 0.04 0.72 7.80 -51.93 -0.40 0.31 16 25 H 0.07 1.25 8.04 -51.93 -0.42 0.83 16 26 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.09 1.31 6.38 -51.93 -0.33 0.98 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.08 1.02 8.09 -51.93 -0.42 0.60 16 33 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 LS Contribution 270.27 15.07 4.07 4.07 Total: -1.00 -30.90 270.27 -6.72 -37.63 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -4.42 Total: 4.79 kcal Atomic # 6 Polarization: -7.48 SS G_CDS: -0.14 Total: -7.62 kcal Atomic # 7 Polarization: -34.05 SS G_CDS: -0.40 Total: -34.44 kcal Atomic # 8 Polarization: -19.83 SS G_CDS: -0.81 Total: -20.64 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -30.90 -6.72 -37.63 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535788514.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.986 kcal (2) G-P(sol) polarization free energy of solvation -30.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds