Wall clock time and date at job start Mon Mar 30 2020 02:45:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86806 * 119.99726 * 2 1 4 4 H 1.48502 * 109.46563 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46947 * 299.99561 * 3 2 1 6 6 H 1.48494 * 109.47178 * 60.00147 * 3 2 1 7 7 C 1.37875 * 119.99957 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99650 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00220 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.46753 * 299.99720 * 9 7 2 11 11 O 1.42899 * 109.46932 * 59.99451 * 9 7 2 12 12 C 1.52992 * 109.47482 * 179.97438 * 9 7 2 13 13 C 1.52997 * 109.47482 * 174.99860 * 12 9 7 14 14 N 1.46899 * 109.47254 * 179.97438 * 13 12 9 15 15 C 1.47013 * 111.00046 * 293.63666 * 14 13 12 16 16 C 1.53099 * 109.25643 * 177.60657 * 15 14 13 17 17 O 1.43014 * 109.25885 * 56.84790 * 16 15 14 18 18 C 1.43018 * 113.73978 * 301.33101 * 17 16 15 19 19 C 1.47011 * 111.00014 * 169.99684 * 14 13 12 20 20 H 0.96998 * 119.99888 * 0.02562 * 1 2 3 21 21 H 0.96705 * 114.00115 * 60.00715 * 11 9 7 22 22 H 1.09002 * 109.47103 * 54.99613 * 12 9 7 23 23 H 1.08998 * 109.46862 * 295.00425 * 12 9 7 24 24 H 1.09002 * 109.47153 * 59.99783 * 13 12 9 25 25 H 1.09001 * 109.46832 * 299.99974 * 13 12 9 26 26 H 1.08995 * 109.50757 * 297.54095 * 15 14 13 27 27 H 1.09000 * 109.50677 * 57.67521 * 15 14 13 28 28 H 1.08994 * 109.50770 * 296.91494 * 16 15 14 29 29 H 1.09003 * 109.54264 * 176.80054 * 16 15 14 30 30 H 1.09001 * 109.50030 * 298.73460 * 18 17 16 31 31 H 1.09002 * 109.54311 * 178.62809 * 18 17 16 32 32 H 1.08999 * 109.50799 * 302.32969 * 19 14 13 33 33 H 1.09004 * 109.50624 * 62.41992 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6241 -2.5567 0.8903 11 8 0.4299 -2.5750 -1.1665 12 6 2.2452 -3.6620 0.0005 13 6 1.4845 -4.9835 0.1263 14 7 2.4390 -6.1001 0.1257 15 6 3.1142 -6.2153 -1.1752 16 6 4.1402 -7.3500 -1.1128 17 8 3.4809 -8.5618 -0.7358 18 6 2.8132 -8.4852 0.5267 19 6 1.7739 -7.3620 0.4810 20 1 -0.4850 0.8400 -0.0004 21 1 0.9223 -2.5299 -1.9976 22 1 2.9294 -3.5551 0.8423 23 1 2.8115 -3.6559 -0.9308 24 1 0.8003 -5.0904 -0.7155 25 1 0.9183 -4.9895 1.0577 26 1 2.3783 -6.4321 -1.9493 27 1 3.6213 -5.2785 -1.4063 28 1 4.9061 -7.1080 -0.3761 29 1 4.6033 -7.4769 -2.0913 30 1 3.5407 -8.2763 1.3110 31 1 2.3161 -9.4329 0.7343 32 1 1.3025 -7.2623 1.4587 33 1 1.0159 -7.5969 -0.2664 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535788514.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:10 Heat of formation + Delta-G solvation = -124.178738 kcal Electronic energy + Delta-G solvation = -14826.000977 eV Core-core repulsion = 12271.440022 eV Total energy + Delta-G solvation = -2554.560955 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.53697 -38.27046 -36.58115 -34.25913 -32.49072 -32.00452 -29.10852 -27.05160 -25.00572 -24.04279 -21.93177 -21.29855 -18.96251 -17.53000 -17.11405 -16.68196 -16.46594 -16.31365 -15.98385 -15.68928 -15.21984 -15.16387 -14.19053 -13.84712 -13.46221 -13.13776 -13.01414 -12.84201 -12.68479 -12.34393 -12.22188 -11.91206 -11.70997 -11.39644 -11.02458 -10.74733 -10.65360 -10.12122 -9.38841 -8.14019 -6.39577 1.39639 1.40981 1.53314 2.38730 2.76178 2.98479 3.11991 3.89027 3.98467 4.04660 4.17763 4.20602 4.30835 4.37496 4.55526 4.58584 4.64482 4.71648 4.80397 4.84374 4.94290 4.99960 5.07225 5.36505 5.63549 5.77951 5.95286 6.01216 6.11515 6.17787 6.72967 7.32899 7.53963 8.90820 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.062507 B = 0.005969 C = 0.005740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 447.843681 B = 4689.968209 C = 4876.896673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.023 3.977 3 Si 0.961 3.039 4 H -0.263 1.263 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.584 4.584 8 H 0.059 0.941 9 C 0.225 3.775 10 H 0.020 0.980 11 O -0.582 6.582 12 C -0.115 4.115 13 C 0.072 3.928 14 N -0.544 5.544 15 C 0.014 3.986 16 C 0.067 3.933 17 O -0.404 6.404 18 C 0.066 3.934 19 C 0.013 3.987 20 H 0.261 0.739 21 H 0.355 0.645 22 H 0.059 0.941 23 H 0.058 0.942 24 H 0.026 0.974 25 H 0.064 0.936 26 H 0.032 0.968 27 H 0.088 0.912 28 H 0.063 0.937 29 H 0.117 0.883 30 H 0.063 0.937 31 H 0.119 0.881 32 H 0.093 0.907 33 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.935 -13.657 -0.723 15.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.179 4.179 3 Si 0.785 3.215 4 H -0.187 1.187 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.622 4.622 8 H 0.078 0.922 9 C 0.168 3.832 10 H 0.038 0.962 11 O -0.386 6.386 12 C -0.153 4.153 13 C -0.056 4.056 14 N -0.269 5.269 15 C -0.115 4.115 16 C -0.009 4.009 17 O -0.322 6.322 18 C -0.010 4.010 19 C -0.115 4.115 20 H 0.070 0.930 21 H 0.200 0.800 22 H 0.078 0.922 23 H 0.077 0.923 24 H 0.044 0.956 25 H 0.082 0.918 26 H 0.051 0.949 27 H 0.106 0.894 28 H 0.081 0.919 29 H 0.135 0.865 30 H 0.082 0.918 31 H 0.137 0.863 32 H 0.111 0.889 33 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 6.661 -13.690 -0.010 15.224 hybrid contribution -0.207 1.310 -0.723 1.510 sum 6.454 -12.380 -0.733 13.981 Atomic orbital electron populations 1.70225 1.07720 1.27305 1.48796 1.25942 0.95497 1.03044 0.93427 0.85494 0.79157 0.79109 0.77715 1.18683 1.20457 1.20482 1.22114 0.93546 0.92761 1.53738 0.92245 1.19268 0.88027 0.91334 0.84615 0.96202 1.86490 1.39467 1.96486 1.16159 1.22034 0.98408 0.93488 1.01398 1.21938 0.93170 0.90284 1.00164 1.62288 1.30565 1.04024 1.30045 1.22871 0.97873 1.00905 0.89814 1.22756 0.93359 0.82693 1.02133 1.87930 1.70422 1.35361 1.38526 1.22780 0.94064 0.98637 0.85549 1.22882 0.96735 0.90014 1.01870 0.93006 0.79984 0.92179 0.92333 0.95614 0.91754 0.94938 0.89402 0.91892 0.86549 0.91844 0.86283 0.88878 0.94860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.47 12.84 21.45 0.28 -54.19 16 2 C 0.02 1.28 5.40 84.65 0.46 1.74 16 3 Si 0.96 43.46 29.54 68.60 2.03 45.48 16 4 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 5 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 6 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 7 C -0.58 -32.24 8.76 25.60 0.22 -32.01 16 8 H 0.06 3.17 7.74 -2.91 -0.02 3.15 16 9 C 0.23 11.57 2.82 29.85 0.08 11.65 16 10 H 0.02 1.15 8.14 -2.39 -0.02 1.14 16 11 O -0.58 -30.26 12.27 -148.98 -1.83 -32.09 16 12 C -0.12 -4.66 4.77 30.59 0.15 -4.52 16 13 C 0.07 2.56 4.85 86.30 0.42 2.98 16 14 N -0.54 -16.22 4.73 -895.23 -4.23 -20.45 16 15 C 0.01 0.36 5.44 86.31 0.47 0.83 16 16 C 0.07 1.50 7.01 72.02 0.50 2.00 16 17 O -0.40 -9.89 10.83 -148.98 -1.61 -11.50 16 18 C 0.07 1.38 7.01 72.01 0.50 1.89 16 19 C 0.01 0.33 5.64 86.31 0.49 0.81 16 20 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16 21 H 0.36 16.26 9.04 -74.05 -0.67 15.60 16 22 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 23 H 0.06 2.25 6.51 -2.39 -0.02 2.23 16 24 H 0.03 0.97 7.80 -2.39 -0.02 0.95 16 25 H 0.06 2.33 8.04 -2.39 -0.02 2.31 16 26 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.09 2.40 6.38 -2.39 -0.02 2.38 16 28 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.12 2.06 8.14 -2.39 -0.02 2.04 16 30 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.12 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.09 2.12 8.09 -2.39 -0.02 2.10 16 33 H 0.03 0.87 8.14 -2.38 -0.02 0.85 16 Total: -1.00 -65.10 270.27 -1.66 -66.76 By element: Atomic # 1 Polarization: 20.19 SS G_CDS: 0.42 Total: 20.61 kcal Atomic # 6 Polarization: -17.91 SS G_CDS: 3.30 Total: -14.61 kcal Atomic # 7 Polarization: -70.69 SS G_CDS: -3.96 Total: -74.65 kcal Atomic # 8 Polarization: -40.15 SS G_CDS: -3.44 Total: -43.59 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.48 kcal Total: -65.10 -1.66 -66.76 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535788514.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.423 kcal (2) G-P(sol) polarization free energy of solvation -65.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds