Wall clock time and date at job start Mon Mar 30 2020 02:38:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86804 * 120.00481 * 2 1 4 4 H 1.48501 * 109.47115 * 270.00224 * 3 2 1 5 5 H 1.48505 * 109.46911 * 29.99984 * 3 2 1 6 6 H 1.48500 * 109.47193 * 149.99950 * 3 2 1 7 7 C 1.37882 * 120.00076 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00038 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99730 * 359.97438 * 7 2 1 10 10 O 1.42903 * 113.25508 * 312.95463 * 9 7 2 11 11 C 1.53506 * 114.17111 * 180.02562 * 9 7 2 12 12 N 1.47475 * 87.93524 * 220.14033 * 11 9 7 13 13 C 1.46905 * 111.00372 * 138.69806 * 12 11 9 14 14 C 1.52996 * 109.47327 * 170.00014 * 13 12 11 15 15 C 1.52997 * 109.47131 * 180.02562 * 14 13 12 16 16 C 1.53006 * 109.47127 * 180.02562 * 15 14 13 17 17 O 1.42895 * 109.47036 * 179.97438 * 16 15 14 18 18 C 1.47481 * 87.83404 * 27.01239 * 12 11 9 19 19 H 0.97000 * 119.99604 * 359.97438 * 1 2 3 20 20 H 0.96700 * 114.00252 * 47.04947 * 10 9 7 21 21 H 1.08996 * 113.47913 * 105.37414 * 11 9 7 22 22 H 1.09005 * 113.53093 * 334.91820 * 11 9 7 23 23 H 1.09001 * 109.46440 * 50.00458 * 13 12 11 24 24 H 1.08992 * 109.47499 * 290.00875 * 13 12 11 25 25 H 1.09001 * 109.46993 * 60.00228 * 14 13 12 26 26 H 1.09004 * 109.47298 * 300.00642 * 14 13 12 27 27 H 1.09001 * 109.46832 * 60.00325 * 15 14 13 28 28 H 1.08993 * 109.47194 * 299.99846 * 15 14 13 29 29 H 1.09001 * 109.46801 * 300.00272 * 16 15 14 30 30 H 1.09001 * 109.46998 * 59.99868 * 16 15 14 31 31 H 0.96700 * 114.00205 * 179.97438 * 17 16 15 32 32 H 1.08994 * 113.47875 * 87.75619 * 18 12 11 33 33 H 1.09007 * 113.47528 * 218.22197 * 18 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 8 0.1944 -2.5407 0.9608 11 6 2.1495 -3.7438 -0.0005 12 7 1.2049 -4.3602 -0.9506 13 6 1.9204 -5.0901 -2.0058 14 6 0.9232 -5.9162 -2.8207 15 6 1.6686 -6.6769 -3.9192 16 6 0.6713 -7.5025 -4.7345 17 8 1.3673 -8.2124 -5.7608 18 6 0.8517 -2.9993 -1.3959 19 1 -0.4849 0.8401 0.0004 20 1 -0.3701 -1.7555 0.9590 21 1 2.1888 -4.2511 0.9634 22 1 3.1381 -3.5668 -0.4242 23 1 2.6573 -5.7535 -1.5529 24 1 2.4250 -4.3800 -2.6608 25 1 0.1863 -5.2528 -3.2735 26 1 0.4187 -6.6264 -2.1655 27 1 2.4052 -7.3403 -3.4659 28 1 2.1733 -5.9670 -4.5743 29 1 0.1661 -8.2124 -4.0795 30 1 -0.0651 -6.8387 -5.1877 31 1 0.7961 -8.7586 -6.3181 32 1 1.4936 -2.6227 -2.1922 33 1 -0.2090 -2.8755 -1.6146 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001654251370.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:24 Heat of formation + Delta-G solvation = -76.886621 kcal Electronic energy + Delta-G solvation = -14567.434228 eV Core-core repulsion = 12014.924013 eV Total energy + Delta-G solvation = -2552.510215 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.16598 -37.24830 -34.88287 -33.36645 -32.03529 -29.17017 -26.48263 -24.87704 -24.12832 -21.56498 -20.70705 -18.58815 -17.38698 -17.20975 -15.89545 -15.11298 -14.94479 -14.49631 -14.30028 -13.86185 -13.32469 -12.97338 -12.36069 -12.03167 -11.69060 -11.58337 -11.40991 -11.14543 -10.95006 -10.87255 -10.49881 -10.43950 -10.16397 -10.06066 -9.87896 -9.23598 -8.64480 -8.16420 -7.86566 -6.26669 -4.36368 3.19389 3.26949 3.30619 4.06801 4.25582 4.90500 4.95533 4.99082 5.11341 5.32631 5.37963 5.62241 5.73772 5.83208 5.94162 6.03916 6.09249 6.16547 6.27692 6.36191 6.49633 6.56317 6.72010 7.06465 7.20903 7.37504 7.47730 7.77113 7.97383 8.06847 8.65940 9.33818 9.69858 10.79397 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.050595 B = 0.005728 C = 0.005534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.285454 B = 4886.819265 C = 5058.103181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.071 3.929 3 Si 0.904 3.096 4 H -0.278 1.278 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.535 4.535 8 H 0.066 0.934 9 C 0.246 3.754 10 O -0.570 6.570 11 C 0.003 3.997 12 N -0.474 5.474 13 C 0.019 3.981 14 C -0.105 4.105 15 C -0.119 4.119 16 C 0.075 3.925 17 O -0.578 6.578 18 C -0.021 4.021 19 H 0.271 0.729 20 H 0.390 0.610 21 H 0.070 0.930 22 H 0.063 0.937 23 H 0.062 0.938 24 H 0.039 0.961 25 H 0.062 0.938 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.045 0.955 30 H 0.045 0.955 31 H 0.376 0.624 32 H 0.058 0.942 33 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.905 -9.150 -7.146 11.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.131 4.131 3 Si 0.731 3.269 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.196 1.196 7 C -0.573 4.573 8 H 0.084 0.916 9 C 0.204 3.796 10 O -0.383 6.383 11 C -0.125 4.125 12 N -0.196 5.196 13 C -0.110 4.110 14 C -0.143 4.143 15 C -0.157 4.157 16 C -0.002 4.002 17 O -0.383 6.383 18 C -0.150 4.150 19 H 0.082 0.918 20 H 0.245 0.755 21 H 0.088 0.912 22 H 0.081 0.919 23 H 0.080 0.920 24 H 0.058 0.942 25 H 0.081 0.919 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.085 0.915 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.223 0.777 32 H 0.076 0.924 33 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.007 -9.783 -6.514 11.796 hybrid contribution 0.336 1.597 -0.914 1.870 sum 1.343 -8.186 -7.428 11.135 Atomic orbital electron populations 1.69297 1.06137 1.27815 1.50703 1.25066 0.94981 0.99687 0.93387 0.86395 0.79859 0.82330 0.78271 1.20435 1.20875 1.19635 1.21602 0.93692 0.90601 1.51399 0.91571 1.19372 0.85126 0.90642 0.84435 1.86028 1.45276 1.48053 1.58896 1.24042 0.95287 0.96514 0.96701 1.68858 1.26946 1.13770 1.10035 1.22631 0.95954 0.97795 0.94637 1.21339 0.98337 0.98633 0.96000 1.21520 0.98381 0.98709 0.97113 1.22241 0.94538 0.94318 0.89129 1.86478 1.39206 1.65011 1.47645 1.24737 1.00753 0.87807 1.01731 0.91831 0.75470 0.91164 0.91921 0.91986 0.94248 0.91913 0.91376 0.91440 0.91474 0.93626 0.93634 0.77725 0.92365 0.91463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.27 11.02 55.43 0.61 -23.66 16 2 C 0.07 1.87 5.39 -17.82 -0.10 1.77 16 3 Si 0.90 20.42 29.54 -169.99 -5.02 15.40 16 4 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 6 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 7 C -0.53 -14.42 8.70 -34.44 -0.30 -14.72 16 8 H 0.07 1.74 7.81 -52.49 -0.41 1.33 16 9 C 0.25 6.36 1.56 -91.24 -0.14 6.22 16 10 O -0.57 -15.75 13.53 -35.23 -0.48 -16.23 16 11 C 0.00 0.08 7.09 -7.56 -0.05 0.02 16 12 N -0.47 -10.14 6.33 -244.66 -1.55 -11.69 16 13 C 0.02 0.33 4.82 -3.82 -0.02 0.31 16 14 C -0.11 -1.55 5.54 -26.73 -0.15 -1.70 16 15 C -0.12 -1.52 5.58 -26.73 -0.15 -1.67 16 16 C 0.08 0.83 7.05 37.16 0.26 1.10 16 17 O -0.58 -6.45 13.66 -35.23 -0.48 -6.93 16 18 C -0.02 -0.49 7.13 -7.55 -0.05 -0.55 16 19 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 20 H 0.39 10.88 6.33 45.56 0.29 11.17 16 21 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 22 H 0.06 1.32 7.87 -51.93 -0.41 0.91 16 23 H 0.06 1.00 8.08 -51.93 -0.42 0.58 16 24 H 0.04 0.69 7.30 -51.93 -0.38 0.31 16 25 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 28 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.38 2.32 9.12 45.56 0.42 2.73 16 32 H 0.06 1.35 7.38 -51.93 -0.38 0.96 16 33 H 0.07 1.65 8.14 -51.92 -0.42 1.23 16 LS Contribution 275.61 15.07 4.15 4.15 Total: -1.00 -29.31 275.61 -7.28 -36.58 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: -3.81 Total: 11.60 kcal Atomic # 6 Polarization: -8.52 SS G_CDS: -0.70 Total: -9.22 kcal Atomic # 7 Polarization: -34.42 SS G_CDS: -0.94 Total: -35.36 kcal Atomic # 8 Polarization: -22.20 SS G_CDS: -0.96 Total: -23.16 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -29.31 -7.28 -36.58 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001654251370.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.303 kcal (2) G-P(sol) polarization free energy of solvation -29.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds