Wall clock time and date at job start Mon Mar 30 2020 02:38:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86804 * 120.00481 * 2 1 4 4 H 1.48501 * 109.47115 * 270.00224 * 3 2 1 5 5 H 1.48505 * 109.46911 * 29.99984 * 3 2 1 6 6 H 1.48500 * 109.47193 * 149.99950 * 3 2 1 7 7 C 1.37882 * 120.00076 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00038 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99730 * 359.97438 * 7 2 1 10 10 O 1.42903 * 113.25508 * 312.95463 * 9 7 2 11 11 C 1.53506 * 114.17111 * 180.02562 * 9 7 2 12 12 N 1.47475 * 87.93524 * 220.14033 * 11 9 7 13 13 C 1.46905 * 111.00372 * 138.69806 * 12 11 9 14 14 C 1.52996 * 109.47327 * 170.00014 * 13 12 11 15 15 C 1.52997 * 109.47131 * 180.02562 * 14 13 12 16 16 C 1.53006 * 109.47127 * 180.02562 * 15 14 13 17 17 O 1.42895 * 109.47036 * 179.97438 * 16 15 14 18 18 C 1.47481 * 87.83404 * 27.01239 * 12 11 9 19 19 H 0.97000 * 119.99604 * 359.97438 * 1 2 3 20 20 H 0.96700 * 114.00252 * 47.04947 * 10 9 7 21 21 H 1.08996 * 113.47913 * 105.37414 * 11 9 7 22 22 H 1.09005 * 113.53093 * 334.91820 * 11 9 7 23 23 H 1.09001 * 109.46440 * 50.00458 * 13 12 11 24 24 H 1.08992 * 109.47499 * 290.00875 * 13 12 11 25 25 H 1.09001 * 109.46993 * 60.00228 * 14 13 12 26 26 H 1.09004 * 109.47298 * 300.00642 * 14 13 12 27 27 H 1.09001 * 109.46832 * 60.00325 * 15 14 13 28 28 H 1.08993 * 109.47194 * 299.99846 * 15 14 13 29 29 H 1.09001 * 109.46801 * 300.00272 * 16 15 14 30 30 H 1.09001 * 109.46998 * 59.99868 * 16 15 14 31 31 H 0.96700 * 114.00205 * 179.97438 * 17 16 15 32 32 H 1.08994 * 113.47875 * 87.75619 * 18 12 11 33 33 H 1.09007 * 113.47528 * 218.22197 * 18 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 8 0.1944 -2.5407 0.9608 11 6 2.1495 -3.7438 -0.0005 12 7 1.2049 -4.3602 -0.9506 13 6 1.9204 -5.0901 -2.0058 14 6 0.9232 -5.9162 -2.8207 15 6 1.6686 -6.6769 -3.9192 16 6 0.6713 -7.5025 -4.7345 17 8 1.3673 -8.2124 -5.7608 18 6 0.8517 -2.9993 -1.3959 19 1 -0.4849 0.8401 0.0004 20 1 -0.3701 -1.7555 0.9590 21 1 2.1888 -4.2511 0.9634 22 1 3.1381 -3.5668 -0.4242 23 1 2.6573 -5.7535 -1.5529 24 1 2.4250 -4.3800 -2.6608 25 1 0.1863 -5.2528 -3.2735 26 1 0.4187 -6.6264 -2.1655 27 1 2.4052 -7.3403 -3.4659 28 1 2.1733 -5.9670 -4.5743 29 1 0.1661 -8.2124 -4.0795 30 1 -0.0651 -6.8387 -5.1877 31 1 0.7961 -8.7586 -6.3181 32 1 1.4936 -2.6227 -2.1922 33 1 -0.2090 -2.8755 -1.6146 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001654251370.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:24 Heat of formation + Delta-G solvation = -102.178365 kcal Electronic energy + Delta-G solvation = -14568.530960 eV Core-core repulsion = 12014.924013 eV Total energy + Delta-G solvation = -2553.606947 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.95435 -38.14913 -36.57121 -34.80006 -34.09334 -30.63105 -28.20426 -26.71532 -25.66522 -22.87473 -21.96922 -20.49785 -19.22952 -18.20497 -17.20002 -16.88749 -16.73952 -15.98988 -15.80287 -15.30772 -14.80905 -14.42270 -13.96355 -13.78381 -13.39345 -13.12940 -12.87970 -12.75727 -12.53285 -12.27066 -12.17140 -12.05187 -11.73584 -11.46661 -11.12885 -10.88142 -10.64723 -10.09098 -9.67873 -8.26286 -6.44348 1.42081 1.44217 1.54720 2.36825 2.94411 3.06429 3.47405 3.89295 3.98653 4.09925 4.14928 4.25740 4.37539 4.44761 4.49321 4.60492 4.72162 4.77768 4.81400 4.92701 4.99001 5.13451 5.21911 5.35548 5.39586 5.52732 5.74431 5.95999 6.34375 6.61720 6.89789 7.29026 7.55197 8.79163 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.050595 B = 0.005728 C = 0.005534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.285454 B = 4886.819265 C = 5058.103181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.027 3.973 3 Si 0.970 3.030 4 H -0.273 1.273 5 H -0.279 1.279 6 H -0.268 1.268 7 C -0.559 4.559 8 H 0.066 0.934 9 C 0.216 3.784 10 O -0.583 6.583 11 C 0.012 3.988 12 N -0.478 5.478 13 C 0.017 3.983 14 C -0.096 4.096 15 C -0.114 4.114 16 C 0.077 3.923 17 O -0.596 6.596 18 C -0.009 4.009 19 H 0.275 0.725 20 H 0.384 0.616 21 H 0.070 0.930 22 H 0.077 0.923 23 H 0.078 0.922 24 H 0.039 0.961 25 H 0.054 0.946 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.061 0.939 29 H 0.058 0.942 30 H 0.052 0.948 31 H 0.398 0.602 32 H 0.060 0.940 33 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.630 -9.573 -7.922 12.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.173 4.173 3 Si 0.795 3.205 4 H -0.198 1.198 5 H -0.204 1.204 6 H -0.193 1.193 7 C -0.597 4.597 8 H 0.084 0.916 9 C 0.175 3.825 10 O -0.395 6.395 11 C -0.117 4.117 12 N -0.200 5.200 13 C -0.112 4.112 14 C -0.134 4.134 15 C -0.152 4.152 16 C -0.001 4.001 17 O -0.405 6.405 18 C -0.139 4.139 19 H 0.085 0.915 20 H 0.238 0.762 21 H 0.089 0.911 22 H 0.095 0.905 23 H 0.096 0.904 24 H 0.058 0.942 25 H 0.072 0.928 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.248 0.752 32 H 0.078 0.922 33 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 1.728 -10.237 -7.306 12.695 hybrid contribution 0.097 1.671 -0.685 1.809 sum 1.825 -8.566 -7.991 11.856 Atomic orbital electron populations 1.69373 1.07298 1.28745 1.50752 1.25842 0.95805 1.02858 0.92798 0.85372 0.78567 0.78168 0.78417 1.19799 1.20449 1.19295 1.21865 0.93900 0.91683 1.52299 0.91562 1.19767 0.85533 0.91914 0.85293 1.86008 1.45822 1.47785 1.59905 1.23966 0.95530 0.94964 0.97264 1.68788 1.27517 1.12644 1.11023 1.22740 0.96695 0.97868 0.93903 1.21230 0.97637 0.98269 0.96249 1.21423 0.98594 0.98638 0.96558 1.22170 0.93935 0.94612 0.89353 1.86413 1.40467 1.65527 1.48047 1.24494 0.99619 0.89203 1.00550 0.91516 0.76168 0.91142 0.90482 0.90401 0.94244 0.92766 0.91163 0.91204 0.92069 0.92392 0.93021 0.75248 0.92228 0.93193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.97 11.02 21.45 0.24 -49.73 16 2 C 0.03 1.40 5.39 84.66 0.46 1.86 16 3 Si 0.97 41.48 29.54 68.60 2.03 43.51 16 4 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 5 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 6 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 7 C -0.56 -30.17 8.70 25.60 0.22 -29.95 16 8 H 0.07 3.47 7.81 -2.91 -0.02 3.44 16 9 C 0.22 11.22 1.56 -11.20 -0.02 11.21 16 10 O -0.58 -32.75 13.53 -148.98 -2.02 -34.77 16 11 C 0.01 0.51 7.09 83.57 0.59 1.11 16 12 N -0.48 -20.05 6.33 -928.35 -5.88 -25.93 16 13 C 0.02 0.55 4.82 86.30 0.42 0.96 16 14 C -0.10 -2.67 5.54 30.59 0.17 -2.50 16 15 C -0.11 -2.69 5.58 30.60 0.17 -2.52 16 16 C 0.08 1.53 7.05 71.98 0.51 2.03 16 17 O -0.60 -11.90 13.66 -148.98 -2.03 -13.94 16 18 C -0.01 -0.42 7.13 83.57 0.60 0.17 16 19 H 0.27 14.01 8.31 -92.71 -0.77 13.24 16 20 H 0.38 21.96 6.33 -74.06 -0.47 21.49 16 21 H 0.07 3.08 8.14 -2.39 -0.02 3.06 16 22 H 0.08 3.14 7.87 -2.38 -0.02 3.12 16 23 H 0.08 2.34 8.08 -2.39 -0.02 2.32 16 24 H 0.04 1.32 7.30 -2.39 -0.02 1.30 16 25 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 26 H 0.07 1.94 8.14 -2.38 -0.02 1.92 16 27 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.40 3.92 9.12 -74.06 -0.68 3.25 16 32 H 0.06 2.75 7.38 -2.39 -0.02 2.73 16 33 H 0.05 2.49 8.14 -2.38 -0.02 2.47 16 Total: -1.00 -61.05 275.61 -4.60 -65.65 By element: Atomic # 1 Polarization: 32.88 SS G_CDS: -0.05 Total: 32.84 kcal Atomic # 6 Polarization: -20.75 SS G_CDS: 3.11 Total: -17.63 kcal Atomic # 7 Polarization: -70.02 SS G_CDS: -5.64 Total: -75.66 kcal Atomic # 8 Polarization: -44.65 SS G_CDS: -4.05 Total: -48.70 kcal Atomic # 14 Polarization: 41.48 SS G_CDS: 2.03 Total: 43.51 kcal Total: -61.05 -4.60 -65.65 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001654251370.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.528 kcal (2) G-P(sol) polarization free energy of solvation -61.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds