Wall clock time and date at job start Mon Mar 30 2020 03:25:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.42903 * 113.99516 * 2 1 4 4 H 1.09002 * 109.47382 * 30.00095 * 3 2 1 5 5 C 1.53002 * 109.46923 * 270.00121 * 3 2 1 6 6 C 1.53000 * 109.46726 * 150.00349 * 3 2 1 7 7 N 1.46905 * 109.47123 * 299.99631 * 6 3 2 8 8 C 1.47475 * 110.99755 * 74.03119 * 7 6 3 9 9 C 1.53511 * 87.93090 * 138.70321 * 8 7 6 10 10 O 1.42907 * 114.16843 * 87.62421 * 9 8 7 11 11 C 1.50696 * 114.34423 * 220.31473 * 9 8 7 12 12 H 1.08001 * 119.99974 * 93.92545 * 11 9 8 13 13 C 1.37881 * 120.00030 * 273.92592 * 11 9 8 14 14 N 1.31516 * 120.00003 * 359.97438 * 13 11 9 15 15 Si 1.86801 * 119.99818 * 179.97438 * 13 11 9 16 16 H 1.48504 * 109.47028 * 90.00131 * 15 13 11 17 17 H 1.48497 * 109.47185 * 209.99727 * 15 13 11 18 18 H 1.48500 * 109.47444 * 330.00108 * 15 13 11 19 19 C 1.47472 * 110.99855 * 170.00361 * 7 6 3 20 20 H 1.09002 * 109.46835 * 179.97438 * 1 2 3 21 21 H 1.08996 * 109.46835 * 299.99639 * 1 2 3 22 22 H 1.08994 * 109.47272 * 60.00221 * 1 2 3 23 23 H 1.08996 * 109.47407 * 60.00564 * 5 3 2 24 24 H 1.09000 * 109.46986 * 180.02562 * 5 3 2 25 25 H 1.09002 * 109.47075 * 299.99607 * 5 3 2 26 26 H 1.08992 * 109.47399 * 59.99748 * 6 3 2 27 27 H 1.09004 * 109.46724 * 180.02562 * 6 3 2 28 28 H 1.09004 * 113.47692 * 253.46974 * 8 7 6 29 29 H 1.09002 * 113.47660 * 23.93806 * 8 7 6 30 30 H 0.96702 * 113.99842 * 86.16111 * 10 9 8 31 31 H 0.97000 * 119.99971 * 180.02562 * 14 13 11 32 32 H 1.09000 * 113.47935 * 336.06408 * 19 7 6 33 33 H 1.08998 * 113.48081 * 106.53364 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5138 5 6 2.2176 1.7714 -1.4425 6 6 3.3589 1.2633 0.7212 7 7 3.1598 0.8160 2.1062 8 6 2.8809 -0.6312 2.1592 9 6 3.7992 -0.7067 3.3871 10 8 3.1374 -0.4572 4.6289 11 6 4.6913 -1.9207 3.4218 12 1 5.6947 -1.8650 3.0261 13 6 4.2267 -3.1026 3.9588 14 7 3.0050 -3.1704 4.4411 15 14 5.3324 -4.6076 4.0011 16 1 6.1012 -4.6214 5.2716 17 1 4.5014 -5.8351 3.9121 18 1 6.2737 -4.5629 2.8534 19 6 4.4507 0.5345 2.7614 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 1.2568 1.8015 -1.9563 24 1 2.6612 2.7670 -1.4425 25 1 2.8829 1.0776 -1.9564 26 1 4.0241 0.5695 0.2074 27 1 3.8020 2.2592 0.7216 28 1 1.8395 -0.8649 2.3808 29 1 3.2623 -1.1788 1.2974 30 1 2.7279 -1.2407 5.0207 31 1 2.6783 -4.0018 4.8192 32 1 5.2511 0.2980 2.0603 33 1 4.7398 1.2886 3.4933 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001654251844.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:43 Heat of formation + Delta-G solvation = -59.861641 kcal Electronic energy + Delta-G solvation = -15333.382632 eV Core-core repulsion = 12781.610675 eV Total energy + Delta-G solvation = -2551.771956 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.28632 -37.52428 -34.23562 -32.07161 -31.85814 -28.20871 -26.43275 -25.54597 -24.67650 -22.49878 -20.60037 -18.48783 -17.20666 -16.47507 -15.30726 -15.15356 -14.81118 -14.36125 -13.86987 -13.80246 -13.05958 -12.75643 -12.32128 -12.29208 -11.94101 -11.57365 -11.37293 -11.12840 -11.09186 -10.79479 -10.59013 -10.32257 -10.13828 -9.86803 -9.24184 -9.15823 -8.55808 -8.03750 -7.74330 -6.18946 -4.27712 3.24374 3.31185 3.34460 4.10522 4.31220 4.83808 5.02823 5.19370 5.39983 5.46794 5.51161 5.68340 5.71808 5.84777 5.91131 5.99209 6.08650 6.16551 6.22684 6.33729 6.48886 6.66938 6.80917 7.27600 7.32386 7.48889 7.56271 7.85623 8.05974 8.17153 8.73547 9.41456 9.77972 10.87131 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.037867 B = 0.008590 C = 0.008228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.251669 B = 3258.952326 C = 3402.136683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.372 6.372 3 C 0.091 3.909 4 H 0.063 0.937 5 C -0.172 4.172 6 C 0.020 3.980 7 N -0.475 5.475 8 C 0.007 3.993 9 C 0.239 3.761 10 O -0.572 6.572 11 C -0.532 4.532 12 H 0.065 0.935 13 C 0.070 3.930 14 N -0.898 5.898 15 Si 0.903 3.097 16 H -0.278 1.278 17 H -0.284 1.284 18 H -0.273 1.273 19 C 0.002 3.998 20 H 0.081 0.919 21 H 0.041 0.959 22 H 0.031 0.969 23 H 0.054 0.946 24 H 0.063 0.937 25 H 0.061 0.939 26 H 0.042 0.958 27 H 0.075 0.925 28 H 0.064 0.936 29 H 0.060 0.940 30 H 0.389 0.611 31 H 0.270 0.730 32 H 0.062 0.938 33 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.566 5.749 -8.285 10.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.291 6.291 3 C 0.033 3.967 4 H 0.081 0.919 5 C -0.230 4.230 6 C -0.109 4.109 7 N -0.198 5.198 8 C -0.122 4.122 9 C 0.198 3.802 10 O -0.384 6.384 11 C -0.570 4.570 12 H 0.083 0.917 13 C -0.131 4.131 14 N -0.539 5.539 15 Si 0.730 3.270 16 H -0.204 1.204 17 H -0.210 1.210 18 H -0.198 1.198 19 C -0.126 4.126 20 H 0.100 0.900 21 H 0.060 0.940 22 H 0.050 0.950 23 H 0.073 0.927 24 H 0.082 0.918 25 H 0.080 0.920 26 H 0.061 0.939 27 H 0.093 0.907 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.245 0.755 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.860 6.561 -8.053 10.774 hybrid contribution 0.644 -1.649 -0.526 1.847 sum -2.216 4.912 -8.579 10.130 Atomic orbital electron populations 1.22691 0.81917 1.02364 0.99200 1.88025 1.18964 1.27262 1.94831 1.22077 0.95305 0.85158 0.94194 0.91920 1.22268 1.01933 1.01404 0.97390 1.22754 0.94994 1.00743 0.92384 1.68905 1.20561 1.19330 1.10958 1.24438 1.01486 0.85924 1.00373 1.19494 0.88742 0.89955 0.82031 1.86014 1.74477 1.40864 1.37088 1.21590 1.00319 0.94961 1.40154 0.91713 1.25053 0.95018 0.99014 0.94063 1.69302 1.15891 1.27923 1.40805 0.86416 0.80349 0.81584 0.78603 1.20382 1.20988 1.19766 1.24059 0.91812 0.99212 0.97566 0.90006 0.94038 0.95021 0.92737 0.91847 0.91965 0.93945 0.90699 0.91718 0.92218 0.75543 0.91949 0.92013 0.91336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.50 10.82 101.05 1.09 1.60 16 2 O -0.37 -6.66 8.10 -35.23 -0.29 -6.94 16 3 C 0.09 1.45 2.99 -26.73 -0.08 1.37 16 4 H 0.06 0.98 7.79 -51.93 -0.40 0.58 16 5 C -0.17 -2.14 9.53 37.16 0.35 -1.79 16 6 C 0.02 0.37 4.70 -3.82 -0.02 0.35 16 7 N -0.48 -10.47 6.41 -244.65 -1.57 -12.04 16 8 C 0.01 0.17 5.21 -7.55 -0.04 0.13 16 9 C 0.24 6.35 1.57 -91.24 -0.14 6.20 16 10 O -0.57 -16.13 13.53 -35.23 -0.48 -16.60 16 11 C -0.53 -14.70 8.69 -34.44 -0.30 -15.00 16 12 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 13 C 0.07 1.90 5.39 -17.82 -0.10 1.81 16 14 N -0.90 -24.78 11.02 55.43 0.61 -24.17 16 15 Si 0.90 20.88 29.54 -169.99 -5.02 15.86 16 16 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 17 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 18 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 19 C 0.00 0.05 7.12 -7.56 -0.05 0.00 16 20 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 21 H 0.04 0.60 8.08 -51.93 -0.42 0.18 16 22 H 0.03 0.37 7.87 -51.93 -0.41 -0.03 16 23 H 0.05 0.61 7.87 -51.93 -0.41 0.20 16 24 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 25 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.04 0.78 7.56 -51.93 -0.39 0.39 16 27 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 28 H 0.06 1.69 8.03 -51.93 -0.42 1.27 16 29 H 0.06 1.50 7.48 -51.93 -0.39 1.11 16 30 H 0.39 11.10 6.33 45.56 0.29 11.39 16 31 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 32 H 0.06 1.33 7.73 -51.93 -0.40 0.93 16 33 H 0.07 1.54 8.14 -51.93 -0.42 1.12 16 LS Contribution 271.53 15.07 4.09 4.09 Total: -1.00 -29.27 271.53 -6.54 -35.82 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -4.61 Total: 9.33 kcal Atomic # 6 Polarization: -6.05 SS G_CDS: 0.72 Total: -5.33 kcal Atomic # 7 Polarization: -35.26 SS G_CDS: -0.96 Total: -36.22 kcal Atomic # 8 Polarization: -22.79 SS G_CDS: -0.76 Total: -23.55 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -29.27 -6.54 -35.82 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001654251844.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.045 kcal (2) G-P(sol) polarization free energy of solvation -29.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds