Wall clock time and date at job start Mon Mar 30 2020 03:25:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42902 * 113.99635 * 2 1 4 4 H 1.08996 * 109.47101 * 330.00128 * 3 2 1 5 5 C 1.52998 * 109.47127 * 90.00331 * 3 2 1 6 6 C 1.53005 * 109.46721 * 210.00169 * 3 2 1 7 7 N 1.46901 * 109.47056 * 65.00343 * 6 3 2 8 8 C 1.47962 * 110.99645 * 169.99960 * 7 6 3 9 9 C 1.53939 * 86.17954 * 222.41370 * 8 7 6 10 10 O 1.42901 * 113.73443 * 269.25769 * 9 8 7 11 11 C 1.50699 * 113.73181 * 138.07765 * 9 8 7 12 12 H 1.07999 * 120.00015 * 4.91121 * 11 9 8 13 13 C 1.37879 * 119.99686 * 184.90847 * 11 9 8 14 14 N 1.31521 * 119.99972 * 13.82310 * 13 11 9 15 15 Si 1.86792 * 119.99875 * 193.81760 * 13 11 9 16 16 H 1.48504 * 109.47216 * 180.02562 * 15 13 11 17 17 H 1.48504 * 109.47601 * 300.00327 * 15 13 11 18 18 H 1.48506 * 109.47155 * 60.00602 * 15 13 11 19 19 C 1.47957 * 111.00157 * 70.63963 * 7 6 3 20 20 H 1.09002 * 109.46900 * 299.99714 * 1 2 3 21 21 H 1.08996 * 109.47548 * 60.00337 * 1 2 3 22 22 H 1.09005 * 109.47061 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47306 * 180.02562 * 5 3 2 24 24 H 1.09007 * 109.46754 * 299.99897 * 5 3 2 25 25 H 1.09001 * 109.47250 * 59.99420 * 5 3 2 26 26 H 1.08996 * 109.47057 * 304.99765 * 6 3 2 27 27 H 1.08995 * 109.46388 * 185.00006 * 6 3 2 28 28 H 1.08999 * 113.76019 * 108.09949 * 8 7 6 29 29 H 1.09000 * 113.85879 * 336.74722 * 8 7 6 30 30 H 0.96693 * 113.99776 * 171.47023 * 10 9 8 31 31 H 0.97001 * 119.99982 * 5.87544 * 14 13 11 32 32 H 1.08994 * 113.76072 * 23.25977 * 19 7 6 33 33 H 1.09001 * 113.75391 * 251.89917 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 -0.5138 5 6 2.2177 1.7714 1.4425 6 6 3.3589 1.2633 -0.7213 7 7 3.1470 0.9323 -2.1368 8 6 4.3915 1.1148 -2.9160 9 6 3.5004 1.7583 -3.9937 10 8 3.0057 0.8297 -4.9607 11 6 4.0985 2.9930 -4.6173 12 1 5.0997 3.3002 -4.3536 13 6 3.3675 3.7302 -5.5246 14 7 2.0736 3.5280 -5.6457 15 14 4.2148 5.0164 -6.5814 16 1 3.2154 5.6656 -7.4675 17 1 4.8406 6.0412 -5.7076 18 1 5.2619 4.3654 -7.4091 19 6 2.5089 2.0576 -2.8548 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5137 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 2.6605 2.7674 1.4425 24 1 1.2568 1.8014 1.9563 25 1 2.8829 1.0775 1.9563 26 1 3.9931 0.5052 -0.2618 27 1 3.8425 2.2370 -0.6444 28 1 4.8542 0.1791 -3.2300 29 1 5.0994 1.8072 -2.4604 30 1 2.3445 1.2013 -5.5604 31 1 1.6184 2.9227 -5.0396 32 1 2.6648 3.0263 -2.3801 33 1 1.4675 1.8753 -3.1199 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001654251850.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:44 Heat of formation + Delta-G solvation = -89.725046 kcal Electronic energy + Delta-G solvation = -15234.243326 eV Core-core repulsion = 12681.176396 eV Total energy + Delta-G solvation = -2553.066931 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.15482 -39.04618 -36.55989 -34.30012 -33.32072 -29.74987 -27.68301 -27.23234 -26.86995 -24.18318 -22.07919 -20.74018 -19.83490 -17.82905 -17.25893 -16.73241 -16.41804 -16.20587 -15.72574 -15.53442 -14.83458 -14.48912 -13.97140 -13.76520 -13.64113 -13.35967 -13.12006 -12.78820 -12.65189 -12.50656 -12.23344 -12.13808 -11.93971 -11.56378 -11.07434 -10.73519 -10.53202 -10.20955 -9.59880 -8.68556 -6.48397 1.55003 1.60291 1.81762 2.52266 2.80802 2.91388 3.00352 3.62266 3.82912 3.99161 4.05918 4.18152 4.27595 4.36678 4.44093 4.48908 4.53613 4.66061 4.70930 4.74523 4.81922 4.84818 4.93968 5.15043 5.22415 5.36010 5.79734 6.05753 6.14754 6.32148 6.44784 6.99916 7.29316 8.62741 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.044307 B = 0.007736 C = 0.007629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.804204 B = 3618.363908 C = 3669.314673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.396 6.396 3 C 0.091 3.909 4 H 0.047 0.953 5 C -0.164 4.164 6 C 0.019 3.981 7 N -0.475 5.475 8 C 0.025 3.975 9 C 0.197 3.803 10 O -0.575 6.575 11 C -0.638 4.638 12 H 0.055 0.945 13 C -0.008 4.008 14 N -0.919 5.919 15 Si 1.111 2.889 16 H -0.282 1.282 17 H -0.269 1.269 18 H -0.275 1.275 19 C -0.006 4.006 20 H 0.056 0.944 21 H 0.028 0.972 22 H 0.096 0.904 23 H 0.075 0.925 24 H 0.069 0.931 25 H 0.069 0.931 26 H 0.085 0.915 27 H 0.057 0.943 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.367 0.633 31 H 0.263 0.737 32 H 0.060 0.940 33 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.718 -1.001 10.993 11.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.316 6.316 3 C 0.033 3.967 4 H 0.065 0.935 5 C -0.221 4.221 6 C -0.110 4.110 7 N -0.197 5.197 8 C -0.104 4.104 9 C 0.156 3.844 10 O -0.381 6.381 11 C -0.676 4.676 12 H 0.073 0.927 13 C -0.209 4.209 14 N -0.556 5.556 15 Si 0.933 3.067 16 H -0.207 1.207 17 H -0.195 1.195 18 H -0.201 1.201 19 C -0.136 4.136 20 H 0.075 0.925 21 H 0.047 0.953 22 H 0.114 0.886 23 H 0.094 0.906 24 H 0.088 0.912 25 H 0.088 0.912 26 H 0.103 0.897 27 H 0.075 0.925 28 H 0.094 0.906 29 H 0.098 0.902 30 H 0.215 0.785 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.764 -1.168 10.149 10.245 hybrid contribution -0.114 0.186 0.952 0.976 sum -0.879 -0.982 11.101 11.179 Atomic orbital electron populations 1.22865 0.80394 1.03464 0.99945 1.87906 1.20629 1.27882 1.95139 1.22107 0.93700 0.84626 0.96311 0.93528 1.22190 1.03188 1.02127 0.94637 1.22853 0.97207 1.00563 0.90346 1.68540 1.12130 1.37294 1.01782 1.23953 0.93163 0.99824 0.93443 1.20364 0.91018 0.87416 0.85580 1.86223 1.62048 1.41375 1.48458 1.22637 1.03255 1.10946 1.30752 0.92658 1.27210 0.95436 1.00658 0.97557 1.70979 1.09284 1.36571 1.38770 0.83015 0.74696 0.73780 0.75243 1.20724 1.19456 1.20105 1.24515 0.98963 0.92467 0.97657 0.92542 0.95313 0.88557 0.90570 0.91168 0.91217 0.89693 0.92481 0.90596 0.90168 0.78494 0.92620 0.92233 0.92796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.76 10.82 113.37 1.23 1.98 16 2 O -0.40 -12.95 10.30 -148.98 -1.53 -14.48 16 3 C 0.09 2.76 2.77 30.60 0.08 2.84 16 4 H 0.05 1.52 7.06 -2.39 -0.02 1.50 16 5 C -0.16 -3.66 9.53 71.98 0.69 -2.97 16 6 C 0.02 0.64 4.48 86.30 0.39 1.03 16 7 N -0.47 -20.19 6.21 -910.86 -5.66 -25.84 16 8 C 0.02 1.10 7.36 86.41 0.64 1.73 16 9 C 0.20 10.08 1.08 -10.89 -0.01 10.07 16 10 O -0.57 -31.17 13.45 -148.98 -2.00 -33.18 16 11 C -0.64 -34.78 8.56 25.60 0.22 -34.57 16 12 H 0.06 2.97 7.85 -2.91 -0.02 2.95 16 13 C -0.01 -0.42 5.26 84.65 0.45 0.03 16 14 N -0.92 -51.87 12.80 21.45 0.27 -51.59 16 15 Si 1.11 47.66 29.93 68.60 2.05 49.72 16 16 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 17 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 18 H -0.28 -11.33 7.11 99.48 0.71 -10.63 16 19 C -0.01 -0.30 5.47 86.41 0.47 0.17 16 20 H 0.06 1.16 7.87 -2.39 -0.02 1.15 16 21 H 0.03 0.79 8.08 -2.39 -0.02 0.77 16 22 H 0.10 2.13 8.14 -2.38 -0.02 2.11 16 23 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 24 H 0.07 1.37 7.87 -2.38 -0.02 1.35 16 25 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 26 H 0.08 2.73 8.14 -2.39 -0.02 2.71 16 27 H 0.06 1.85 7.69 -2.39 -0.02 1.83 16 28 H 0.08 3.34 8.14 -2.39 -0.02 3.32 16 29 H 0.08 3.29 7.75 -2.39 -0.02 3.27 16 30 H 0.37 19.79 6.95 -74.06 -0.52 19.28 16 31 H 0.26 14.82 5.52 -92.71 -0.51 14.31 16 32 H 0.06 2.76 7.73 -2.39 -0.02 2.74 16 33 H 0.05 2.61 7.79 -2.39 -0.02 2.59 16 Total: -1.00 -62.32 272.22 -1.90 -64.22 By element: Atomic # 1 Polarization: 30.02 SS G_CDS: 0.83 Total: 30.84 kcal Atomic # 6 Polarization: -23.83 SS G_CDS: 4.15 Total: -19.68 kcal Atomic # 7 Polarization: -72.06 SS G_CDS: -5.38 Total: -77.44 kcal Atomic # 8 Polarization: -44.12 SS G_CDS: -3.54 Total: -47.66 kcal Atomic # 14 Polarization: 47.66 SS G_CDS: 2.05 Total: 49.72 kcal Total: -62.32 -1.90 -64.22 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001654251850.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.504 kcal (2) G-P(sol) polarization free energy of solvation -62.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds