Wall clock time and date at job start Mon Mar 30 2020 02:23:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13609 * 1 3 3 C 1.43193 * 179.97438 * 2 1 4 4 N 1.30610 * 120.00222 * 333.05468 * 3 2 1 5 5 O 1.21792 * 120.00104 * 359.97438 * 4 3 2 6 6 C 1.34546 * 117.00002 * 179.97438 * 5 4 3 7 7 H 1.07993 * 120.00111 * 0.02562 * 6 5 4 8 8 C 1.38924 * 119.99932 * 179.97438 * 6 5 4 9 9 N 1.31376 * 119.99820 * 180.02562 * 8 6 5 10 10 Si 1.86805 * 120.00157 * 0.02562 * 8 6 5 11 11 H 1.48504 * 109.47016 * 89.99528 * 10 8 6 12 12 H 1.48490 * 109.47135 * 209.99711 * 10 8 6 13 13 H 1.48502 * 109.46870 * 329.99852 * 10 8 6 14 14 C 1.48105 * 119.99591 * 153.05368 * 3 2 1 15 15 C 1.39520 * 120.13919 * 0.02562 * 14 3 2 16 16 C 1.37964 * 119.86034 * 180.27732 * 15 14 3 17 17 C 1.38361 * 120.13935 * 359.49232 * 16 15 14 18 18 C 1.38369 * 120.27370 * 0.50611 * 17 16 15 19 19 C 1.37961 * 120.13913 * 359.75457 * 18 17 16 20 20 H 0.97006 * 119.99533 * 180.02562 * 9 8 6 21 21 H 1.08002 * 120.06536 * 359.97438 * 15 14 3 22 22 H 1.07998 * 119.93193 * 179.74966 * 16 15 14 23 23 H 1.08000 * 119.86237 * 180.26023 * 17 16 15 24 24 H 1.08005 * 119.92727 * 179.72123 * 18 17 16 25 25 H 1.07999 * 120.06620 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 7 3.2216 -1.0074 0.5125 5 8 2.6131 -1.9477 0.9909 6 6 3.3464 -2.9535 1.5017 7 1 4.4248 -2.9028 1.4757 8 6 2.7162 -4.0568 2.0636 9 7 3.4323 -5.0386 2.5628 10 14 0.8508 -4.1442 2.1092 11 1 0.3557 -4.8023 0.8734 12 1 0.4209 -4.9290 3.2942 13 1 0.2929 -2.7707 2.1961 14 6 3.3079 1.1444 -0.5813 15 6 2.6127 2.2229 -1.1291 16 6 3.3078 3.2827 -1.6741 17 6 4.6914 3.2824 -1.6689 18 6 5.3866 2.2158 -1.1270 19 6 4.7031 1.1476 -0.5838 20 1 2.9922 -5.8092 2.9547 21 1 1.5327 2.2258 -1.1308 22 1 2.7708 4.1162 -2.1021 23 1 5.2309 4.1162 -2.0930 24 1 6.4666 2.2193 -1.1299 25 1 5.2470 0.3155 -0.1615 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006095557.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:21 Heat of formation + Delta-G solvation = 79.847124 kcal Electronic energy + Delta-G solvation = -13018.057931 eV Core-core repulsion = 10578.394116 eV Total energy + Delta-G solvation = -2439.663815 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.064 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.97984 -38.71614 -35.96532 -33.86142 -32.70397 -30.62576 -29.94148 -26.12306 -23.61165 -22.18562 -21.24820 -19.14508 -18.67999 -16.84644 -15.69476 -15.43025 -15.32316 -14.26966 -13.98749 -13.58574 -13.11733 -13.03546 -12.88273 -12.69750 -12.31285 -11.93581 -11.29075 -11.21396 -10.95411 -10.73579 -10.31094 -9.81252 -9.29373 -9.15294 -8.63922 -7.73902 -6.94288 -4.54756 1.28354 1.73268 2.32816 2.99774 3.04361 3.18218 3.35485 3.86028 3.87870 3.95276 4.38790 4.62318 4.67536 5.22498 5.27084 5.39309 5.67563 5.85739 5.91485 6.32478 6.35745 6.74194 6.80692 6.89406 7.15407 7.30595 7.43741 7.88035 8.18364 8.33541 9.51714 10.09706 Molecular weight = 216.06amu Principal moments of inertia in cm(-1) A = 0.045233 B = 0.007741 C = 0.006626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.863676 B = 3616.009815 C = 4225.030984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C 0.254 3.746 3 C -0.015 4.015 4 N -0.292 5.292 5 O 0.078 5.922 6 C -0.370 4.370 7 H 0.121 0.879 8 C 0.082 3.918 9 N -0.831 5.831 10 Si 0.895 3.105 11 H -0.263 1.263 12 H -0.269 1.269 13 H -0.254 1.254 14 C 0.037 3.963 15 C -0.130 4.130 16 C -0.113 4.113 17 C -0.144 4.144 18 C -0.113 4.113 19 C -0.111 4.111 20 H 0.293 0.707 21 H 0.115 0.885 22 H 0.117 0.883 23 H 0.115 0.885 24 H 0.119 0.881 25 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.200 9.186 -4.663 10.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.138 5.138 2 C -0.060 4.060 3 C -0.174 4.174 4 N 0.012 4.988 5 O -0.013 6.013 6 C -0.451 4.451 7 H 0.139 0.861 8 C -0.130 4.130 9 N -0.465 5.465 10 Si 0.718 3.282 11 H -0.188 1.188 12 H -0.194 1.194 13 H -0.177 1.177 14 C 0.035 3.965 15 C -0.150 4.150 16 C -0.131 4.131 17 C -0.163 4.163 18 C -0.132 4.132 19 C -0.130 4.130 20 H 0.104 0.896 21 H 0.133 0.867 22 H 0.135 0.865 23 H 0.133 0.867 24 H 0.137 0.863 25 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 1.294 9.036 -4.583 10.214 hybrid contribution -1.011 -0.175 0.079 1.029 sum 0.284 8.861 -4.504 9.944 Atomic orbital electron populations 1.81042 1.12578 1.08569 1.11611 1.26506 0.93422 0.93232 0.92839 1.17755 0.81472 0.98357 1.19848 1.70902 1.31874 0.94257 1.01787 1.82846 1.38100 1.22949 1.57414 1.21145 0.93245 0.93591 1.37158 0.86110 1.24510 1.01145 0.93416 0.93975 1.69515 1.37550 1.07009 1.32443 0.86302 0.82092 0.80579 0.79217 1.18785 1.19390 1.17736 1.17788 0.92395 0.90523 0.95779 1.21026 0.99498 0.93972 1.00474 1.20891 0.94305 0.97985 0.99887 1.21043 0.94227 0.98884 1.02149 1.21025 0.99571 0.93927 0.98629 1.21180 0.92952 0.98938 0.99931 0.89624 0.86681 0.86471 0.86689 0.86259 0.85024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -10.29 18.54 41.84 0.78 -9.52 15 2 C 0.25 5.59 13.35 -22.47 -0.30 5.29 15 3 C -0.02 -0.32 6.88 -82.42 -0.57 -0.89 15 4 N -0.29 -6.68 9.70 33.68 0.33 -6.35 15 5 O 0.08 1.93 7.94 15.57 0.12 2.06 15 6 C -0.37 -9.45 10.60 30.99 0.33 -9.12 15 7 H 0.12 3.17 8.06 -52.49 -0.42 2.75 15 8 C 0.08 2.05 5.50 -17.49 -0.10 1.96 15 9 N -0.83 -21.13 13.95 55.49 0.77 -20.36 15 10 Si 0.90 19.72 28.62 -169.99 -4.87 14.86 15 11 H -0.26 -5.74 7.11 56.52 0.40 -5.34 15 12 H -0.27 -5.60 7.11 56.52 0.40 -5.20 15 13 H -0.25 -5.91 7.11 56.52 0.40 -5.51 15 14 C 0.04 0.67 5.88 -104.89 -0.62 0.06 15 15 C -0.13 -2.08 9.44 -39.20 -0.37 -2.45 15 16 C -0.11 -1.51 10.03 -39.64 -0.40 -1.91 15 17 C -0.14 -1.82 10.04 -39.49 -0.40 -2.22 15 18 C -0.11 -1.54 10.03 -39.63 -0.40 -1.94 15 19 C -0.11 -1.81 9.58 -39.21 -0.38 -2.19 15 20 H 0.29 6.76 8.31 -40.82 -0.34 6.42 15 21 H 0.12 1.83 7.16 -52.49 -0.38 1.46 15 22 H 0.12 1.26 8.06 -52.49 -0.42 0.84 15 23 H 0.12 1.13 8.06 -52.49 -0.42 0.71 15 24 H 0.12 1.31 8.06 -52.48 -0.42 0.88 15 25 H 0.13 2.20 7.56 -52.49 -0.40 1.81 15 LS Contribution 246.65 15.07 3.72 3.72 Total: -1.00 -26.25 246.65 -3.93 -30.19 By element: Atomic # 1 Polarization: 0.41 SS G_CDS: -1.60 Total: -1.19 kcal Atomic # 6 Polarization: -10.22 SS G_CDS: -3.19 Total: -13.41 kcal Atomic # 7 Polarization: -38.10 SS G_CDS: 1.88 Total: -36.22 kcal Atomic # 8 Polarization: 1.93 SS G_CDS: 0.12 Total: 2.06 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -4.87 Total: 14.86 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -26.25 -3.93 -30.19 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006095557.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.034 kcal (2) G-P(sol) polarization free energy of solvation -26.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.187 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds