Wall clock time and date at job start Mon Mar 30 2020 02:22:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31213 * 1 3 3 Si 1.86792 * 119.99975 * 2 1 4 4 H 1.48506 * 109.47236 * 240.00195 * 3 2 1 5 5 H 1.48496 * 109.47437 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47387 * 120.00071 * 3 2 1 7 7 C 1.39146 * 119.99670 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99355 * 180.02562 * 7 2 1 9 9 N 1.36672 * 120.00351 * 359.97438 * 7 2 1 10 10 N 1.39503 * 119.11401 * 359.97438 * 9 7 2 11 11 C 1.30221 * 122.65168 * 179.97438 * 10 9 7 12 12 C 1.46251 * 119.98337 * 0.02562 * 11 10 9 13 13 C 1.39624 * 121.82508 * 179.97438 * 12 11 10 14 14 C 1.37749 * 119.56248 * 180.02562 * 13 12 11 15 15 C 1.38890 * 120.76896 * 0.02562 * 14 13 12 16 16 C 1.37815 * 120.71674 * 0.02562 * 15 14 13 17 17 C 1.39407 * 119.53691 * 359.97438 * 16 15 14 18 18 C 1.34921 * 119.11494 * 179.97438 * 9 7 2 19 19 O 1.21774 * 120.60914 * 359.97438 * 18 9 7 20 20 H 0.96994 * 120.00031 * 359.97438 * 1 2 3 21 21 H 1.08000 * 120.01240 * 180.02562 * 11 10 9 22 22 H 1.07998 * 120.21860 * 0.04214 * 13 12 11 23 23 H 1.07993 * 119.61528 * 180.02562 * 14 13 12 24 24 H 1.07997 * 119.64502 * 179.97438 * 15 14 13 25 25 H 1.07998 * 120.23008 * 179.70462 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3121 0.0000 0.0000 3 14 2.2461 1.6177 0.0000 4 1 3.0998 1.6964 -1.2126 5 1 1.2812 2.7464 0.0006 6 1 3.0999 1.6964 1.2125 7 6 2.0078 -1.2051 0.0005 8 1 3.0879 -1.2050 0.0010 9 7 1.3244 -2.3887 0.0016 10 7 -0.0704 -2.3671 0.0027 11 6 -0.7899 -3.4526 0.0032 12 6 -0.1378 -4.7616 0.0033 13 6 -0.8714 -5.9496 0.0044 14 6 -0.2090 -7.1574 0.0049 15 6 1.1790 -7.2065 0.0049 16 6 1.9245 -6.0474 0.0049 17 6 1.2760 -4.8133 0.0044 18 6 2.0170 -3.5466 0.0016 19 8 3.2347 -3.5407 0.0002 20 1 -0.4850 0.8400 0.0004 21 1 -1.8678 -3.3862 0.0036 22 1 -1.9510 -5.9218 0.0046 23 1 -0.7756 -8.0768 0.0054 24 1 1.6797 -8.1635 0.0058 25 1 3.0034 -6.0947 0.0097 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019434502.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:05 Heat of formation + Delta-G solvation = 47.859295 kcal Electronic energy + Delta-G solvation = -13703.493141 eV Core-core repulsion = 11262.442229 eV Total energy + Delta-G solvation = -2441.050912 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.064 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.75854 -37.44292 -35.74027 -33.45490 -31.23062 -30.51453 -29.41225 -25.77583 -23.33991 -22.82943 -21.08056 -18.98211 -17.52128 -16.70974 -15.71820 -14.76190 -14.45313 -14.43599 -14.14791 -13.77611 -13.14308 -12.57203 -12.11722 -11.94701 -11.51296 -11.36490 -11.05631 -10.94064 -10.75029 -10.54286 -9.62294 -9.46393 -8.63018 -8.43100 -8.39019 -7.55691 -6.53583 -4.14567 1.40720 1.55559 3.06112 3.08068 3.11102 3.13276 3.67430 3.69575 4.15255 4.60554 5.12701 5.16814 5.31819 5.35720 5.38175 5.75341 5.90707 6.27543 6.42858 6.48714 6.60324 6.89960 7.06248 7.14166 7.26323 7.41805 7.80953 8.23902 8.72664 9.31786 9.60999 10.34103 Molecular weight = 216.06amu Principal moments of inertia in cm(-1) A = 0.055805 B = 0.009275 C = 0.007976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 501.627859 B = 3017.982232 C = 3509.767602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.773 5.773 2 C 0.038 3.962 3 Si 0.937 3.063 4 H -0.266 1.266 5 H -0.277 1.277 6 H -0.266 1.266 7 C -0.295 4.295 8 H 0.128 0.872 9 N -0.224 5.224 10 N -0.152 5.152 11 C -0.012 4.012 12 C -0.064 4.064 13 C -0.112 4.112 14 C -0.116 4.116 15 C -0.149 4.149 16 C -0.058 4.058 17 C -0.135 4.135 18 C 0.443 3.557 19 O -0.576 6.576 20 H 0.273 0.727 21 H 0.171 0.829 22 H 0.124 0.876 23 H 0.116 0.884 24 H 0.117 0.883 25 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.543 -6.479 0.013 7.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.403 5.403 2 C -0.177 4.177 3 Si 0.761 3.239 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.191 1.191 7 C -0.427 4.427 8 H 0.146 0.854 9 N -0.026 5.026 10 N 0.030 4.970 11 C -0.204 4.204 12 C -0.070 4.070 13 C -0.133 4.133 14 C -0.135 4.135 15 C -0.169 4.169 16 C -0.078 4.078 17 C -0.142 4.142 18 C 0.241 3.759 19 O -0.461 6.461 20 H 0.084 0.916 21 H 0.188 0.812 22 H 0.142 0.858 23 H 0.134 0.866 24 H 0.135 0.865 25 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -3.102 -5.342 0.012 6.177 hybrid contribution 0.298 -0.204 0.001 0.361 sum -2.804 -5.545 0.013 6.214 Atomic orbital electron populations 1.70220 1.06125 1.27871 1.36094 1.25667 0.95748 1.00269 0.95974 0.85827 0.79129 0.79125 0.79803 1.19064 1.20152 1.19071 1.20216 0.93112 0.80686 1.48685 0.85425 1.45462 1.01529 1.06722 1.48864 1.75888 0.89022 1.23304 1.08792 1.24800 0.99863 0.87039 1.08700 1.19775 0.92495 0.94723 1.00043 1.20998 0.99226 0.91434 1.01603 1.21015 0.94417 0.97338 1.00746 1.20953 0.94005 0.97561 1.04339 1.20928 1.00022 0.90761 0.96047 1.20031 0.92846 0.94316 1.07040 1.18377 0.87908 0.84071 0.85519 1.90667 1.12533 1.86478 1.56385 0.91590 0.81235 0.85815 0.86569 0.86460 0.85482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -20.21 11.23 55.50 0.62 -19.59 15 2 C 0.04 0.98 5.49 -17.48 -0.10 0.88 15 3 Si 0.94 19.36 29.55 -169.99 -5.02 14.33 15 4 H -0.27 -5.44 7.11 56.52 0.40 -5.04 15 5 H -0.28 -5.49 7.11 56.52 0.40 -5.09 15 6 H -0.27 -5.44 7.11 56.52 0.40 -5.04 15 7 C -0.30 -8.24 9.61 -15.06 -0.14 -8.38 15 8 H 0.13 3.56 7.11 -52.48 -0.37 3.18 15 9 N -0.22 -6.27 3.62 -12.12 -0.04 -6.31 15 10 N -0.15 -3.93 8.59 31.94 0.27 -3.65 15 11 C -0.01 -0.25 11.38 -15.02 -0.17 -0.42 15 12 C -0.06 -1.32 5.89 -104.93 -0.62 -1.93 15 13 C -0.11 -1.82 9.86 -39.24 -0.39 -2.21 15 14 C -0.12 -1.72 10.01 -39.52 -0.40 -2.11 15 15 C -0.15 -2.37 10.01 -39.49 -0.40 -2.76 15 16 C -0.06 -1.15 9.66 -39.30 -0.38 -1.53 15 17 C -0.13 -3.11 5.90 -104.79 -0.62 -3.72 15 18 C 0.44 12.04 7.64 -12.76 -0.10 11.95 15 19 O -0.58 -16.73 16.11 5.12 0.08 -16.64 15 20 H 0.27 6.53 8.30 -40.82 -0.34 6.19 15 21 H 0.17 2.93 8.06 -52.49 -0.42 2.50 15 22 H 0.12 1.59 8.06 -52.49 -0.42 1.17 15 23 H 0.12 1.31 8.06 -52.49 -0.42 0.89 15 24 H 0.12 1.48 8.06 -52.49 -0.42 1.06 15 25 H 0.13 2.45 7.80 -52.49 -0.41 2.04 15 LS Contribution 231.31 15.07 3.49 3.49 Total: -1.00 -31.24 231.31 -5.51 -36.75 By element: Atomic # 1 Polarization: 3.48 SS G_CDS: -1.61 Total: 1.88 kcal Atomic # 6 Polarization: -6.95 SS G_CDS: -3.30 Total: -10.25 kcal Atomic # 7 Polarization: -30.41 SS G_CDS: 0.85 Total: -29.55 kcal Atomic # 8 Polarization: -16.73 SS G_CDS: 0.08 Total: -16.64 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -5.02 Total: 14.33 kcal Total LS contribution 3.49 Total: 3.49 kcal Total: -31.24 -5.51 -36.75 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019434502.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.608 kcal (2) G-P(sol) polarization free energy of solvation -31.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.749 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds