Wall clock time and date at job start Mon Mar 30 2020 02:22:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31213 * 1 3 3 Si 1.86792 * 119.99975 * 2 1 4 4 H 1.48506 * 109.47236 * 240.00195 * 3 2 1 5 5 H 1.48496 * 109.47437 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47387 * 120.00071 * 3 2 1 7 7 C 1.39146 * 119.99670 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99355 * 180.02562 * 7 2 1 9 9 N 1.36672 * 120.00351 * 359.97438 * 7 2 1 10 10 N 1.39503 * 119.11401 * 359.97438 * 9 7 2 11 11 C 1.30221 * 122.65168 * 179.97438 * 10 9 7 12 12 C 1.46251 * 119.98337 * 0.02562 * 11 10 9 13 13 C 1.39624 * 121.82508 * 179.97438 * 12 11 10 14 14 C 1.37749 * 119.56248 * 180.02562 * 13 12 11 15 15 C 1.38890 * 120.76896 * 0.02562 * 14 13 12 16 16 C 1.37815 * 120.71674 * 0.02562 * 15 14 13 17 17 C 1.39407 * 119.53691 * 359.97438 * 16 15 14 18 18 C 1.34921 * 119.11494 * 179.97438 * 9 7 2 19 19 O 1.21774 * 120.60914 * 359.97438 * 18 9 7 20 20 H 0.96994 * 120.00031 * 359.97438 * 1 2 3 21 21 H 1.08000 * 120.01240 * 180.02562 * 11 10 9 22 22 H 1.07998 * 120.21860 * 0.04214 * 13 12 11 23 23 H 1.07993 * 119.61528 * 180.02562 * 14 13 12 24 24 H 1.07997 * 119.64502 * 179.97438 * 15 14 13 25 25 H 1.07998 * 120.23008 * 179.70462 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3121 0.0000 0.0000 3 14 2.2461 1.6177 0.0000 4 1 3.0998 1.6964 -1.2126 5 1 1.2812 2.7464 0.0006 6 1 3.0999 1.6964 1.2125 7 6 2.0078 -1.2051 0.0005 8 1 3.0879 -1.2050 0.0010 9 7 1.3244 -2.3887 0.0016 10 7 -0.0704 -2.3671 0.0027 11 6 -0.7899 -3.4526 0.0032 12 6 -0.1378 -4.7616 0.0033 13 6 -0.8714 -5.9496 0.0044 14 6 -0.2090 -7.1574 0.0049 15 6 1.1790 -7.2065 0.0049 16 6 1.9245 -6.0474 0.0049 17 6 1.2760 -4.8133 0.0044 18 6 2.0170 -3.5466 0.0016 19 8 3.2347 -3.5407 0.0002 20 1 -0.4850 0.8400 0.0004 21 1 -1.8678 -3.3862 0.0036 22 1 -1.9510 -5.9218 0.0046 23 1 -0.7756 -8.0768 0.0054 24 1 1.6797 -8.1635 0.0058 25 1 3.0034 -6.0947 0.0097 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019434502.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:04 Heat of formation + Delta-G solvation = 26.446837 kcal Electronic energy + Delta-G solvation = -13704.421655 eV Core-core repulsion = 11262.442229 eV Total energy + Delta-G solvation = -2441.979426 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.064 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.51084 -39.05574 -37.65266 -35.24895 -33.02416 -32.01684 -31.09923 -27.62332 -24.97879 -24.49039 -22.69117 -20.70505 -19.24248 -18.44025 -17.47947 -16.44873 -16.37698 -16.10170 -15.72098 -15.31620 -14.67530 -14.15601 -13.71551 -13.66340 -13.43291 -12.85402 -12.78045 -12.74934 -12.21346 -12.11079 -11.37857 -11.31757 -10.35915 -10.26886 -9.92195 -9.30665 -8.38457 -6.17505 -0.13457 0.07551 1.35741 1.35842 1.46461 1.48960 1.93006 2.09606 2.37640 2.87874 3.31423 3.43938 3.81293 3.90954 4.15282 4.42521 4.48628 4.80204 4.85091 5.06014 5.12002 5.27900 5.52134 5.55283 5.61433 5.89351 6.04363 6.34777 6.82552 7.41946 7.76153 8.51953 Molecular weight = 216.06amu Principal moments of inertia in cm(-1) A = 0.055805 B = 0.009275 C = 0.007976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 501.627859 B = 3017.982232 C = 3509.767602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.807 5.807 2 C 0.008 3.992 3 Si 1.006 2.994 4 H -0.266 1.266 5 H -0.257 1.257 6 H -0.266 1.266 7 C -0.362 4.362 8 H 0.102 0.898 9 N -0.251 5.251 10 N -0.200 5.200 11 C 0.027 3.973 12 C -0.088 4.088 13 C -0.092 4.092 14 C -0.098 4.098 15 C -0.115 4.115 16 C -0.091 4.091 17 C -0.155 4.155 18 C 0.411 3.589 19 O -0.628 6.628 20 H 0.278 0.722 21 H 0.219 0.781 22 H 0.173 0.827 23 H 0.175 0.825 24 H 0.162 0.838 25 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.606 -9.732 0.016 11.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C -0.204 4.204 3 Si 0.825 3.175 4 H -0.191 1.191 5 H -0.180 1.180 6 H -0.191 1.191 7 C -0.491 4.491 8 H 0.119 0.881 9 N -0.052 5.052 10 N -0.013 5.013 11 C -0.170 4.170 12 C -0.093 4.093 13 C -0.111 4.111 14 C -0.116 4.116 15 C -0.134 4.134 16 C -0.111 4.111 17 C -0.162 4.162 18 C 0.210 3.790 19 O -0.517 6.517 20 H 0.089 0.911 21 H 0.236 0.764 22 H 0.191 0.809 23 H 0.192 0.808 24 H 0.179 0.821 25 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -6.182 -8.558 0.016 10.558 hybrid contribution 0.988 0.205 0.000 1.010 sum -5.194 -8.353 0.016 9.836 Atomic orbital electron populations 1.70280 1.07089 1.28798 1.37545 1.26491 0.96718 1.02705 0.94466 0.84863 0.78036 0.75059 0.79495 1.19065 1.18016 1.19076 1.20110 0.92535 0.82373 1.54060 0.88078 1.45415 1.02136 1.06647 1.51028 1.75797 0.88601 1.25890 1.11012 1.25864 1.01684 0.86897 1.02578 1.20048 0.91560 0.96254 1.01479 1.21577 1.01505 0.89801 0.98261 1.21724 0.93944 0.99042 0.96919 1.21550 0.94955 0.97569 0.99363 1.21070 1.00184 0.91218 0.98609 1.20226 0.94357 0.93517 1.08107 1.19191 0.88036 0.85664 0.86123 1.90575 1.14337 1.87334 1.59456 0.91111 0.76447 0.80930 0.80774 0.82092 0.86684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -44.06 11.23 21.69 0.24 -43.82 15 2 C 0.01 0.41 5.49 85.00 0.47 0.88 15 3 Si 1.01 42.05 29.55 68.60 2.03 44.08 15 4 H -0.27 -10.95 7.11 99.48 0.71 -10.25 15 5 H -0.26 -9.73 7.11 99.48 0.71 -9.02 15 6 H -0.27 -10.96 7.11 99.48 0.71 -10.25 15 7 C -0.36 -22.12 9.61 84.16 0.81 -21.31 15 8 H 0.10 6.38 7.11 -2.91 -0.02 6.36 15 9 N -0.25 -15.08 3.62 -310.36 -1.12 -16.20 15 10 N -0.20 -10.66 8.59 -52.86 -0.45 -11.11 15 11 C 0.03 1.11 11.38 87.02 0.99 2.10 15 12 C -0.09 -3.37 5.89 -20.06 -0.12 -3.49 15 13 C -0.09 -2.34 9.86 22.49 0.22 -2.12 15 14 C -0.10 -2.11 10.01 22.31 0.22 -1.88 15 15 C -0.12 -3.02 10.01 22.33 0.22 -2.79 15 16 C -0.09 -3.50 9.66 22.45 0.22 -3.28 15 17 C -0.16 -7.22 5.90 -19.97 -0.12 -7.34 15 18 C 0.41 24.07 7.64 86.45 0.66 24.73 15 19 O -0.63 -40.13 16.11 -4.59 -0.07 -40.20 15 20 H 0.28 13.74 8.30 -92.71 -0.77 12.97 15 21 H 0.22 6.52 8.06 -2.91 -0.02 6.49 15 22 H 0.17 2.85 8.06 -2.91 -0.02 2.83 15 23 H 0.17 2.03 8.06 -2.91 -0.02 2.00 15 24 H 0.16 2.90 8.06 -2.91 -0.02 2.88 15 25 H 0.12 4.59 7.80 -2.91 -0.02 4.56 15 Total: -1.00 -78.62 231.31 5.41 -73.21 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: 1.21 Total: 8.57 kcal Atomic # 6 Polarization: -18.09 SS G_CDS: 3.58 Total: -14.52 kcal Atomic # 7 Polarization: -69.80 SS G_CDS: -1.33 Total: -71.14 kcal Atomic # 8 Polarization: -40.13 SS G_CDS: -0.07 Total: -40.20 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 2.03 Total: 44.08 kcal Total: -78.62 5.41 -73.21 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019434502.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.659 kcal (2) G-P(sol) polarization free energy of solvation -78.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds