Wall clock time and date at job start Mon Mar 30 2020 03:02:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39684 * 120.11172 * 260.27863 * 3 2 1 5 5 C 1.37975 * 119.99243 * 179.75057 * 4 3 2 6 6 C 1.38251 * 120.23529 * 0.54566 * 5 4 3 7 7 C 1.38990 * 120.22703 * 359.70927 * 6 5 4 8 8 N 1.39707 * 119.99598 * 180.02562 * 7 6 5 9 9 C 1.46500 * 120.00252 * 359.97025 * 8 7 6 10 10 C 1.53005 * 109.47367 * 180.02562 * 9 8 7 11 11 C 1.50701 * 109.47074 * 179.97438 * 10 9 8 12 12 H 1.08002 * 120.00104 * 0.02562 * 11 10 9 13 13 C 1.37872 * 119.99889 * 180.02562 * 11 10 9 14 14 N 1.31514 * 120.00167 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 120.00162 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47158 * 59.99775 * 15 13 11 17 17 H 1.48496 * 109.47204 * 180.02562 * 15 13 11 18 18 H 1.48505 * 109.46650 * 299.99909 * 15 13 11 19 19 C 1.38659 * 120.00299 * 0.02562 * 7 6 5 20 20 H 1.08001 * 120.00210 * 0.02562 * 4 3 2 21 21 H 1.07999 * 119.88045 * 180.25511 * 5 4 3 22 22 H 1.07998 * 119.88594 * 179.72474 * 6 5 4 23 23 H 0.97004 * 119.99915 * 179.97438 * 8 7 6 24 24 H 1.08999 * 109.46968 * 300.00428 * 9 8 7 25 25 H 1.09004 * 109.47007 * 60.00311 * 9 8 7 26 26 H 1.09002 * 109.46912 * 300.00441 * 10 9 8 27 27 H 1.09000 * 109.46625 * 60.00202 * 10 9 8 28 28 H 0.96996 * 120.00177 * 180.02562 * 14 13 11 29 29 H 1.08006 * 120.11350 * 180.02562 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2687 0.2050 1.1910 5 6 4.6484 0.2000 1.1890 6 6 5.3422 0.0044 0.0093 7 6 4.6546 -0.1945 -1.1821 8 7 5.3606 -0.3922 -2.3713 9 6 6.8255 -0.3891 -2.3628 10 6 7.3444 -0.6249 -3.7827 11 6 8.8514 -0.6211 -3.7739 12 1 9.3857 -0.4664 -2.8481 13 6 9.5481 -0.8150 -4.9478 14 7 8.8976 -1.0028 -6.0752 15 14 11.4160 -0.8110 -4.9368 16 1 11.9081 -1.8915 -4.0449 17 1 11.9196 -1.0384 -6.3152 18 1 11.9053 0.5008 -4.4418 19 6 3.2680 -0.1968 -1.1903 20 1 2.7304 0.3625 2.1140 21 1 5.1883 0.3541 2.1116 22 1 6.4222 0.0060 0.0136 23 1 4.8807 -0.5314 -3.2028 24 1 7.1847 0.5740 -2.0003 25 1 7.1867 -1.1817 -1.7073 26 1 6.9852 -1.5879 -4.1456 27 1 6.9833 0.1680 -4.4377 28 1 9.3877 -1.1396 -6.9010 29 1 2.7319 -0.3517 -2.1151 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020051456.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:52 Heat of formation + Delta-G solvation = 41.207285 kcal Electronic energy + Delta-G solvation = -12836.582251 eV Core-core repulsion = 10531.075981 eV Total energy + Delta-G solvation = -2305.506270 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.096 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.48196 -36.75457 -35.48886 -33.16158 -31.21448 -30.66729 -27.99636 -24.87362 -23.60066 -22.02677 -20.92462 -18.58182 -16.48640 -16.12567 -16.04404 -15.09122 -14.53319 -14.38193 -13.83550 -13.79247 -13.67831 -13.08973 -12.65924 -12.39885 -12.31821 -11.62755 -11.33956 -11.14405 -11.01609 -10.69497 -10.62830 -9.67926 -9.67078 -9.38672 -8.90180 -8.49834 -7.18601 -6.15392 -4.19436 0.89020 1.62132 2.63998 3.05416 3.25653 3.30723 3.32193 3.71667 4.02404 4.04921 4.36868 4.93301 5.16671 5.21560 5.29363 5.51067 5.68660 5.83328 6.12861 6.17318 6.29238 6.39642 6.52149 6.61225 6.79098 7.35698 7.45611 7.54041 7.63682 7.84428 8.02369 8.23866 8.86202 9.45838 10.96053 Molecular weight = 216.10amu Principal moments of inertia in cm(-1) A = 0.066279 B = 0.004760 C = 0.004456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 422.354417 B = 5880.369706 C = 6282.275912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C 0.265 3.735 3 C 0.012 3.988 4 C -0.146 4.146 5 C -0.071 4.071 6 C -0.173 4.173 7 C 0.227 3.773 8 N -0.736 5.736 9 C 0.123 3.877 10 C 0.013 3.987 11 C -0.525 4.525 12 H 0.058 0.942 13 C 0.059 3.941 14 N -0.893 5.893 15 Si 0.897 3.103 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.276 1.276 19 C -0.160 4.160 20 H 0.123 0.877 21 H 0.128 0.872 22 H 0.130 0.870 23 H 0.400 0.600 24 H 0.052 0.948 25 H 0.052 0.948 26 H 0.022 0.978 27 H 0.022 0.978 28 H 0.263 0.737 29 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.432 1.847 11.162 13.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.109 5.109 2 C -0.051 4.051 3 C 0.008 3.992 4 C -0.169 4.169 5 C -0.090 4.090 6 C -0.197 4.197 7 C 0.119 3.881 8 N -0.361 5.361 9 C 0.000 4.000 10 C -0.024 4.024 11 C -0.564 4.564 12 H 0.077 0.923 13 C -0.143 4.143 14 N -0.531 5.531 15 Si 0.725 3.275 16 H -0.201 1.201 17 H -0.212 1.212 18 H -0.201 1.201 19 C -0.186 4.186 20 H 0.141 0.859 21 H 0.146 0.854 22 H 0.148 0.852 23 H 0.234 0.766 24 H 0.070 0.930 25 H 0.070 0.930 26 H 0.041 0.959 27 H 0.041 0.959 28 H 0.073 0.927 29 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -7.917 1.811 10.940 13.625 hybrid contribution 1.311 -0.084 -0.507 1.408 sum -6.606 1.727 10.433 12.469 Atomic orbital electron populations 1.81209 1.12258 1.09344 1.08051 1.25875 0.92826 0.93240 0.93110 1.15653 0.83560 1.05064 0.94893 1.20761 0.94251 1.05690 0.96204 1.20780 0.93279 0.97244 0.97671 1.20975 1.00612 1.06732 0.91336 1.17779 0.90310 0.92231 0.87739 1.45321 1.07291 1.76963 1.06513 1.21761 0.76491 0.99771 1.01957 1.19280 0.96330 0.97703 0.89132 1.20980 0.90854 1.50305 0.94226 0.92339 1.25007 0.98855 0.94937 0.95496 1.69941 1.35834 1.48524 0.98794 0.86569 0.85113 0.78692 0.77134 1.20099 1.21216 1.20103 1.20516 0.92351 1.08421 0.97295 0.85933 0.85423 0.85173 0.76554 0.93007 0.93004 0.95944 0.95940 0.92704 0.85527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -6.39 18.54 41.83 0.78 -5.61 15 2 C 0.26 3.42 15.33 -22.47 -0.34 3.07 15 3 C 0.01 0.15 5.73 -106.96 -0.61 -0.47 15 4 C -0.15 -1.52 9.75 -39.14 -0.38 -1.90 15 5 C -0.07 -0.74 10.02 -39.67 -0.40 -1.13 15 6 C -0.17 -2.17 9.31 -39.30 -0.37 -2.54 15 7 C 0.23 3.13 6.65 -83.84 -0.56 2.57 15 8 N -0.74 -11.44 5.73 -58.67 -0.34 -11.77 15 9 C 0.12 2.25 4.85 -4.04 -0.02 2.23 15 10 C 0.01 0.30 5.09 -27.88 -0.14 0.16 15 11 C -0.52 -13.81 9.11 -34.44 -0.31 -14.12 15 12 H 0.06 1.47 7.74 -52.49 -0.41 1.07 15 13 C 0.06 1.61 5.46 -17.82 -0.10 1.51 15 14 N -0.89 -25.52 13.29 55.43 0.74 -24.78 15 15 Si 0.90 20.60 29.54 -169.99 -5.02 15.58 15 16 H -0.28 -6.21 7.11 56.52 0.40 -5.81 15 17 H -0.29 -6.56 7.11 56.52 0.40 -6.16 15 18 H -0.28 -6.21 7.11 56.52 0.40 -5.81 15 19 C -0.16 -1.99 9.60 -38.96 -0.37 -2.37 15 20 H 0.12 1.04 8.06 -52.49 -0.42 0.62 15 21 H 0.13 0.99 8.06 -52.49 -0.42 0.57 15 22 H 0.13 1.63 6.71 -52.49 -0.35 1.27 15 23 H 0.40 5.93 8.48 -40.82 -0.35 5.59 15 24 H 0.05 0.94 7.94 -51.93 -0.41 0.53 15 25 H 0.05 0.94 7.94 -51.93 -0.41 0.53 15 26 H 0.02 0.56 8.14 -51.93 -0.42 0.13 15 27 H 0.02 0.56 8.14 -51.93 -0.42 0.14 15 28 H 0.26 7.15 8.31 -40.82 -0.34 6.81 15 29 H 0.13 1.44 8.06 -52.48 -0.42 1.02 15 LS Contribution 266.89 15.07 4.02 4.02 Total: -1.00 -28.45 266.89 -6.61 -35.06 By element: Atomic # 1 Polarization: 3.67 SS G_CDS: -3.18 Total: 0.49 kcal Atomic # 6 Polarization: -9.38 SS G_CDS: -3.61 Total: -12.98 kcal Atomic # 7 Polarization: -43.34 SS G_CDS: 1.18 Total: -42.17 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -28.45 -6.61 -35.06 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020051456.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.269 kcal (2) G-P(sol) polarization free energy of solvation -28.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.062 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds