Wall clock time and date at job start Mon Mar 30 2020 03:02:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39684 * 120.11172 * 260.27863 * 3 2 1 5 5 C 1.37975 * 119.99243 * 179.75057 * 4 3 2 6 6 C 1.38251 * 120.23529 * 0.54566 * 5 4 3 7 7 C 1.38990 * 120.22703 * 359.70927 * 6 5 4 8 8 N 1.39707 * 119.99598 * 180.02562 * 7 6 5 9 9 C 1.46500 * 120.00252 * 359.97025 * 8 7 6 10 10 C 1.53005 * 109.47367 * 180.02562 * 9 8 7 11 11 C 1.50701 * 109.47074 * 179.97438 * 10 9 8 12 12 H 1.08002 * 120.00104 * 0.02562 * 11 10 9 13 13 C 1.37872 * 119.99889 * 180.02562 * 11 10 9 14 14 N 1.31514 * 120.00167 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 120.00162 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47158 * 59.99775 * 15 13 11 17 17 H 1.48496 * 109.47204 * 180.02562 * 15 13 11 18 18 H 1.48505 * 109.46650 * 299.99909 * 15 13 11 19 19 C 1.38659 * 120.00299 * 0.02562 * 7 6 5 20 20 H 1.08001 * 120.00210 * 0.02562 * 4 3 2 21 21 H 1.07999 * 119.88045 * 180.25511 * 5 4 3 22 22 H 1.07998 * 119.88594 * 179.72474 * 6 5 4 23 23 H 0.97004 * 119.99915 * 179.97438 * 8 7 6 24 24 H 1.08999 * 109.46968 * 300.00428 * 9 8 7 25 25 H 1.09004 * 109.47007 * 60.00311 * 9 8 7 26 26 H 1.09002 * 109.46912 * 300.00441 * 10 9 8 27 27 H 1.09000 * 109.46625 * 60.00202 * 10 9 8 28 28 H 0.96996 * 120.00177 * 180.02562 * 14 13 11 29 29 H 1.08006 * 120.11350 * 180.02562 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2687 0.2050 1.1910 5 6 4.6484 0.2000 1.1890 6 6 5.3422 0.0044 0.0093 7 6 4.6546 -0.1945 -1.1821 8 7 5.3606 -0.3922 -2.3713 9 6 6.8255 -0.3891 -2.3628 10 6 7.3444 -0.6249 -3.7827 11 6 8.8514 -0.6211 -3.7739 12 1 9.3857 -0.4664 -2.8481 13 6 9.5481 -0.8150 -4.9478 14 7 8.8976 -1.0028 -6.0752 15 14 11.4160 -0.8110 -4.9368 16 1 11.9081 -1.8915 -4.0449 17 1 11.9196 -1.0384 -6.3152 18 1 11.9053 0.5008 -4.4418 19 6 3.2680 -0.1968 -1.1903 20 1 2.7304 0.3625 2.1140 21 1 5.1883 0.3541 2.1116 22 1 6.4222 0.0060 0.0136 23 1 4.8807 -0.5314 -3.2028 24 1 7.1847 0.5740 -2.0003 25 1 7.1867 -1.1817 -1.7073 26 1 6.9852 -1.5879 -4.1456 27 1 6.9833 0.1680 -4.4377 28 1 9.3877 -1.1396 -6.9010 29 1 2.7319 -0.3517 -2.1151 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020051456.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:52 Heat of formation + Delta-G solvation = 25.012661 kcal Electronic energy + Delta-G solvation = -12837.284503 eV Core-core repulsion = 10531.075981 eV Total energy + Delta-G solvation = -2306.208522 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.096 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.47599 -37.89214 -36.75960 -34.99270 -32.29820 -32.07151 -29.37110 -26.44681 -24.85617 -23.00738 -22.54490 -19.65365 -18.39935 -17.27235 -17.06465 -16.38497 -16.17511 -15.78275 -15.03980 -14.98915 -14.63102 -14.20639 -14.09011 -13.71466 -13.63357 -13.23552 -12.85251 -12.51037 -12.38539 -12.24009 -12.06511 -11.49769 -11.35761 -10.91468 -10.53379 -9.83896 -8.29490 -8.21409 -6.32221 -0.07564 0.70157 1.44454 1.46557 1.54301 1.60868 2.04481 2.38827 2.62665 3.00360 3.07167 3.13905 4.05915 4.30999 4.35612 4.46468 4.59368 4.61261 4.75860 4.95482 5.01431 5.33504 5.43827 5.48836 5.61443 5.64075 5.75181 5.89787 6.15249 6.43586 6.48640 6.82351 6.91665 7.37800 8.90487 Molecular weight = 216.10amu Principal moments of inertia in cm(-1) A = 0.066279 B = 0.004760 C = 0.004456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 422.354417 B = 5880.369706 C = 6282.275912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.467 5.467 2 C 0.284 3.716 3 C 0.005 3.995 4 C -0.129 4.129 5 C -0.063 4.063 6 C -0.178 4.178 7 C 0.206 3.794 8 N -0.745 5.745 9 C 0.146 3.854 10 C 0.018 3.982 11 C -0.541 4.541 12 H 0.068 0.932 13 C 0.001 3.999 14 N -0.932 5.932 15 Si 0.966 3.034 16 H -0.266 1.266 17 H -0.287 1.287 18 H -0.266 1.266 19 C -0.160 4.160 20 H 0.150 0.850 21 H 0.162 0.838 22 H 0.130 0.870 23 H 0.400 0.600 24 H 0.055 0.945 25 H 0.055 0.945 26 H -0.002 1.002 27 H -0.002 1.002 28 H 0.264 0.736 29 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.816 2.214 13.363 14.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.143 5.143 2 C -0.030 4.030 3 C 0.001 3.999 4 C -0.152 4.152 5 C -0.082 4.082 6 C -0.202 4.202 7 C 0.101 3.899 8 N -0.373 5.373 9 C 0.023 3.977 10 C -0.019 4.019 11 C -0.580 4.580 12 H 0.087 0.913 13 C -0.198 4.198 14 N -0.572 5.572 15 Si 0.791 3.209 16 H -0.190 1.190 17 H -0.213 1.213 18 H -0.191 1.191 19 C -0.185 4.185 20 H 0.167 0.833 21 H 0.179 0.821 22 H 0.148 0.852 23 H 0.234 0.766 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.017 0.983 27 H 0.017 0.983 28 H 0.072 0.928 29 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -7.327 2.185 13.184 15.241 hybrid contribution 1.050 -0.185 -1.109 1.538 sum -6.278 2.001 12.075 13.756 Atomic orbital electron populations 1.81234 1.13252 1.10709 1.09152 1.25944 0.92796 0.92181 0.92089 1.15708 0.82928 1.05953 0.95351 1.21129 0.94456 1.03099 0.96520 1.21117 0.93273 0.95729 0.98064 1.21189 1.00884 1.06400 0.91720 1.17904 0.90727 0.93899 0.87405 1.45046 1.06016 1.78745 1.07452 1.21260 0.78289 0.99928 0.98269 1.19124 0.95421 0.95462 0.91923 1.21498 0.92459 1.49413 0.94607 0.91335 1.25953 1.03950 0.94662 0.95194 1.70079 1.37739 1.49916 0.99449 0.85478 0.79100 0.79234 0.77122 1.19038 1.21300 1.19050 1.20553 0.91984 1.08061 0.97932 0.83272 0.82092 0.85209 0.76598 0.92699 0.92688 0.98327 0.98330 0.92779 0.85153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -13.29 18.54 19.00 0.35 -12.94 15 2 C 0.28 6.89 15.33 88.33 1.35 8.24 15 3 C 0.00 0.10 5.73 -21.38 -0.12 -0.02 15 4 C -0.13 -2.23 9.75 22.56 0.22 -2.01 15 5 C -0.06 -1.08 10.02 22.21 0.22 -0.85 15 6 C -0.18 -4.08 9.31 22.45 0.21 -3.87 15 7 C 0.21 5.43 6.65 38.17 0.25 5.68 15 8 N -0.75 -23.19 5.73 -339.52 -1.95 -25.13 15 9 C 0.15 5.36 4.85 86.38 0.42 5.77 15 10 C 0.02 0.88 5.09 29.85 0.15 1.03 15 11 C -0.54 -28.63 9.11 25.60 0.23 -28.39 15 12 H 0.07 3.40 7.74 -2.91 -0.02 3.37 15 13 C 0.00 0.04 5.46 84.65 0.46 0.50 15 14 N -0.93 -54.43 13.29 21.45 0.28 -54.14 15 15 Si 0.97 42.07 29.54 68.60 2.03 44.10 15 16 H -0.27 -11.06 7.11 99.48 0.71 -10.35 15 17 H -0.29 -12.44 7.11 99.48 0.71 -11.73 15 18 H -0.27 -11.07 7.11 99.48 0.71 -10.36 15 19 C -0.16 -3.79 9.60 22.67 0.22 -3.57 15 20 H 0.15 1.83 8.06 -2.91 -0.02 1.81 15 21 H 0.16 1.70 8.06 -2.91 -0.02 1.67 15 22 H 0.13 2.97 6.71 -2.91 -0.02 2.95 15 23 H 0.40 12.20 8.48 -92.71 -0.79 11.41 15 24 H 0.05 1.95 7.94 -2.39 -0.02 1.94 15 25 H 0.05 1.96 7.94 -2.38 -0.02 1.94 15 26 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 15 27 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 15 28 H 0.26 14.58 8.31 -92.71 -0.77 13.81 15 29 H 0.13 2.91 8.06 -2.91 -0.02 2.89 15 Total: -1.00 -61.18 266.89 4.71 -56.47 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: 0.37 Total: 9.14 kcal Atomic # 6 Polarization: -21.12 SS G_CDS: 3.62 Total: -17.50 kcal Atomic # 7 Polarization: -90.91 SS G_CDS: -1.31 Total: -92.22 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.10 kcal Total: -61.18 4.71 -56.47 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020051456.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.484 kcal (2) G-P(sol) polarization free energy of solvation -61.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.472 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds