Wall clock time and date at job start Mon Mar 30 2020 02:28:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86803 * 119.99725 * 2 1 4 4 H 1.48500 * 109.47206 * 269.99829 * 3 2 1 5 5 H 1.48491 * 109.47105 * 30.00225 * 3 2 1 6 6 H 1.48507 * 109.46803 * 150.00241 * 3 2 1 7 7 C 1.37875 * 119.99879 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99929 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99770 * 179.97438 * 7 2 1 10 10 H 1.08994 * 109.55905 * 300.21348 * 9 7 2 11 11 C 1.53259 * 109.55560 * 179.97438 * 9 7 2 12 12 C 1.53261 * 108.84186 * 185.63828 * 11 9 7 13 13 H 1.08997 * 109.56075 * 294.68951 * 12 11 9 14 14 C 1.53003 * 109.55956 * 174.36168 * 12 11 9 15 15 C 1.50701 * 109.47085 * 175.53529 * 14 12 11 16 16 O 1.20821 * 119.99990 * 0.02562 * 15 14 12 17 17 O 1.34227 * 119.99760 * 180.02562 * 15 14 12 18 18 O 1.43095 * 108.94358 * 54.52606 * 12 11 9 19 19 C 1.42967 * 113.77014 * 302.02838 * 18 12 11 20 20 O 1.42968 * 109.46615 * 58.79323 * 19 18 12 21 21 H 0.97006 * 119.99890 * 359.97438 * 1 2 3 22 22 H 1.08997 * 109.57603 * 65.83491 * 11 9 7 23 23 H 1.08998 * 109.68326 * 305.50863 * 11 9 7 24 24 H 1.08995 * 109.47256 * 295.54661 * 14 12 11 25 25 H 1.09004 * 109.46608 * 55.54126 * 14 12 11 26 26 H 0.96703 * 117.00227 * 180.02562 * 17 15 14 27 27 H 1.08999 * 109.46817 * 178.79154 * 19 18 12 28 28 H 1.08998 * 109.47248 * 298.79321 * 19 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 1 3.8761 -0.6770 -0.8887 11 6 4.0246 -2.6382 -0.0010 12 6 5.5505 -2.6214 0.1409 13 1 5.9939 -2.1582 -0.7405 14 6 6.0675 -4.0543 0.2841 15 6 7.5742 -4.0442 0.3133 16 8 8.1730 -2.9983 0.2288 17 8 8.2508 -5.1972 0.4332 18 8 5.9005 -1.8673 1.3056 19 6 5.4160 -0.5223 1.2884 20 8 3.9910 -0.5307 1.1726 21 1 -0.4850 0.8401 0.0004 22 1 3.7503 -3.1233 -0.9378 23 1 3.5861 -3.1835 0.8347 24 1 5.6889 -4.4863 1.2104 25 1 5.7245 -4.6504 -0.5616 26 1 9.2161 -5.1404 0.4477 27 1 5.7025 -0.0211 2.2129 28 1 5.8465 0.0081 0.4391 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000034441168.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:31 Heat of formation + Delta-G solvation = -186.926991 kcal Electronic energy + Delta-G solvation = -15006.637288 eV Core-core repulsion = 12215.803608 eV Total energy + Delta-G solvation = -2790.833680 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 216.088 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.28365 -38.96989 -36.14272 -35.09006 -33.27533 -32.20376 -29.70019 -26.32732 -24.79530 -22.85737 -20.73021 -20.17511 -18.01864 -17.11480 -16.63762 -16.40541 -15.72784 -15.60992 -14.97331 -14.37160 -14.05361 -13.58257 -12.84027 -12.62054 -12.42423 -12.27056 -11.52128 -11.42605 -10.98749 -10.84700 -10.55426 -10.46229 -10.25110 -10.03733 -9.55868 -8.92536 -8.62795 -8.49497 -6.17842 -4.27279 2.29245 3.05179 3.33816 3.41307 3.60658 4.06305 4.46958 4.73806 4.87136 5.14470 5.34898 5.44338 5.57091 5.58968 5.66018 5.80056 6.04217 6.21761 6.33938 6.41544 6.50427 7.00403 7.47517 7.53136 7.93646 8.28243 8.38354 8.83241 9.45210 10.92153 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.061795 B = 0.008089 C = 0.007441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 452.998891 B = 3460.719853 C = 3762.190662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.084 3.916 3 Si 0.876 3.124 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.230 1.230 7 C -0.518 4.518 8 H 0.082 0.918 9 C 0.180 3.820 10 H 0.017 0.983 11 C -0.160 4.160 12 C 0.096 3.904 13 H 0.062 0.938 14 C -0.105 4.105 15 C 0.478 3.522 16 O -0.504 6.504 17 O -0.523 6.523 18 O -0.396 6.396 19 C 0.217 3.783 20 O -0.391 6.391 21 H 0.267 0.733 22 H 0.076 0.924 23 H 0.077 0.923 24 H 0.115 0.885 25 H 0.119 0.881 26 H 0.406 0.594 27 H 0.111 0.889 28 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.333 -6.873 -0.345 15.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.121 4.121 3 Si 0.703 3.297 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.153 1.153 7 C -0.555 4.555 8 H 0.100 0.900 9 C 0.125 3.875 10 H 0.035 0.965 11 C -0.198 4.198 12 C 0.038 3.962 13 H 0.080 0.920 14 C -0.142 4.142 15 C 0.320 3.680 16 O -0.391 6.391 17 O -0.336 6.336 18 O -0.318 6.318 19 C 0.102 3.898 20 O -0.312 6.312 21 H 0.076 0.924 22 H 0.094 0.906 23 H 0.096 0.904 24 H 0.133 0.867 25 H 0.137 0.863 26 H 0.264 0.736 27 H 0.128 0.872 28 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 12.887 -6.486 -0.087 14.427 hybrid contribution 0.993 0.926 -0.334 1.398 sum 13.880 -5.560 -0.420 14.958 Atomic orbital electron populations 1.69924 1.06659 1.27631 1.48220 1.25054 0.94717 0.99975 0.92355 0.86951 0.82600 0.82072 0.78105 1.21180 1.21643 1.15295 1.20856 0.86978 0.95050 1.52582 0.90032 1.20249 0.95822 0.87267 0.84123 0.96512 1.22699 0.92504 1.01414 1.03227 1.21993 0.95507 0.89598 0.89122 0.91998 1.21497 0.86999 0.98988 1.06720 1.23548 0.91862 0.80751 0.71841 1.90728 1.70699 1.32821 1.44854 1.84553 1.26313 1.37055 1.85640 1.87992 1.76419 1.26167 1.41184 1.23680 0.83244 0.82375 1.00485 1.88605 1.18302 1.76665 1.47599 0.92352 0.90587 0.90397 0.86719 0.86310 0.73614 0.87192 0.95327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.93 13.96 55.43 0.77 -26.15 15 2 C 0.08 2.43 5.47 -17.82 -0.10 2.33 15 3 Si 0.88 21.80 27.00 -169.99 -4.59 17.21 15 4 H -0.29 -6.96 7.11 56.52 0.40 -6.56 15 5 H -0.29 -7.22 7.11 56.52 0.40 -6.82 15 6 H -0.23 -5.52 5.30 56.52 0.30 -5.22 15 7 C -0.52 -14.55 9.38 -34.44 -0.32 -14.87 15 8 H 0.08 2.42 7.99 -52.49 -0.42 2.00 15 9 C 0.18 4.30 2.08 -27.75 -0.06 4.24 15 10 H 0.02 0.41 7.56 -51.93 -0.39 0.02 15 11 C -0.16 -3.09 4.87 -26.46 -0.13 -3.22 15 12 C 0.10 1.63 2.29 -26.59 -0.06 1.57 15 13 H 0.06 1.07 7.97 -51.93 -0.41 0.65 15 14 C -0.10 -1.35 5.53 -27.88 -0.15 -1.51 15 15 C 0.48 6.44 8.21 36.01 0.30 6.73 15 16 O -0.50 -8.58 16.19 -24.03 -0.39 -8.97 15 17 O -0.52 -5.30 13.42 -39.25 -0.53 -5.82 15 18 O -0.40 -7.72 9.78 -64.74 -0.63 -8.35 15 19 C 0.22 4.31 7.77 101.05 0.79 5.10 15 20 O -0.39 -9.37 7.43 -59.03 -0.44 -9.81 15 21 H 0.27 7.58 8.31 -40.82 -0.34 7.24 15 22 H 0.08 1.31 8.14 -51.93 -0.42 0.89 15 23 H 0.08 1.54 8.14 -51.93 -0.42 1.11 15 24 H 0.11 1.39 8.14 -51.93 -0.42 0.97 15 25 H 0.12 1.19 8.14 -51.93 -0.42 0.76 15 26 H 0.41 2.38 9.10 45.56 0.41 2.79 15 27 H 0.11 1.93 8.14 -51.93 -0.42 1.51 15 28 H 0.03 0.55 8.14 -51.93 -0.42 0.13 15 LS Contribution 242.68 15.07 3.66 3.66 Total: -1.00 -33.90 242.68 -4.47 -38.37 By element: Atomic # 1 Polarization: 2.06 SS G_CDS: -2.58 Total: -0.53 kcal Atomic # 6 Polarization: 0.13 SS G_CDS: 0.26 Total: 0.39 kcal Atomic # 7 Polarization: -26.93 SS G_CDS: 0.77 Total: -26.15 kcal Atomic # 8 Polarization: -30.96 SS G_CDS: -1.99 Total: -32.95 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.59 Total: 17.21 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -33.90 -4.47 -38.37 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034441168.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -148.560 kcal (2) G-P(sol) polarization free energy of solvation -33.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds