Wall clock time and date at job start Mon Mar 30 2020 02:28:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86803 * 119.99725 * 2 1 4 4 H 1.48500 * 109.47206 * 269.99829 * 3 2 1 5 5 H 1.48491 * 109.47105 * 30.00225 * 3 2 1 6 6 H 1.48507 * 109.46803 * 150.00241 * 3 2 1 7 7 C 1.37875 * 119.99879 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99929 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99770 * 179.97438 * 7 2 1 10 10 H 1.08994 * 109.55905 * 300.21348 * 9 7 2 11 11 C 1.53259 * 109.55560 * 179.97438 * 9 7 2 12 12 C 1.53261 * 108.84186 * 185.63828 * 11 9 7 13 13 H 1.08997 * 109.56075 * 294.68951 * 12 11 9 14 14 C 1.53003 * 109.55956 * 174.36168 * 12 11 9 15 15 C 1.50701 * 109.47085 * 175.53529 * 14 12 11 16 16 O 1.20821 * 119.99990 * 0.02562 * 15 14 12 17 17 O 1.34227 * 119.99760 * 180.02562 * 15 14 12 18 18 O 1.43095 * 108.94358 * 54.52606 * 12 11 9 19 19 C 1.42967 * 113.77014 * 302.02838 * 18 12 11 20 20 O 1.42968 * 109.46615 * 58.79323 * 19 18 12 21 21 H 0.97006 * 119.99890 * 359.97438 * 1 2 3 22 22 H 1.08997 * 109.57603 * 65.83491 * 11 9 7 23 23 H 1.08998 * 109.68326 * 305.50863 * 11 9 7 24 24 H 1.08995 * 109.47256 * 295.54661 * 14 12 11 25 25 H 1.09004 * 109.46608 * 55.54126 * 14 12 11 26 26 H 0.96703 * 117.00227 * 180.02562 * 17 15 14 27 27 H 1.08999 * 109.46817 * 178.79154 * 19 18 12 28 28 H 1.08998 * 109.47248 * 298.79321 * 19 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 1 3.8761 -0.6770 -0.8887 11 6 4.0246 -2.6382 -0.0010 12 6 5.5505 -2.6214 0.1409 13 1 5.9939 -2.1582 -0.7405 14 6 6.0675 -4.0543 0.2841 15 6 7.5742 -4.0442 0.3133 16 8 8.1730 -2.9983 0.2288 17 8 8.2508 -5.1972 0.4332 18 8 5.9005 -1.8673 1.3056 19 6 5.4160 -0.5223 1.2884 20 8 3.9910 -0.5307 1.1726 21 1 -0.4850 0.8401 0.0004 22 1 3.7503 -3.1233 -0.9378 23 1 3.5861 -3.1835 0.8347 24 1 5.6889 -4.4863 1.2104 25 1 5.7245 -4.6504 -0.5616 26 1 9.2161 -5.1404 0.4477 27 1 5.7025 -0.0211 2.2129 28 1 5.8465 0.0081 0.4391 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000034441168.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:31 Heat of formation + Delta-G solvation = -212.711713 kcal Electronic energy + Delta-G solvation = -15007.755398 eV Core-core repulsion = 12215.803608 eV Total energy + Delta-G solvation = -2791.951789 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 216.088 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.40241 -40.43726 -37.20272 -36.64841 -35.00282 -34.02402 -31.22664 -28.08530 -26.33170 -24.39271 -22.05900 -21.67277 -19.23364 -18.87768 -18.11863 -17.56787 -17.36136 -16.95046 -16.37859 -16.18040 -15.57605 -15.19965 -14.61925 -14.04088 -13.84309 -13.34613 -13.14046 -12.91868 -12.49445 -12.45321 -12.23331 -11.91364 -11.86808 -11.59609 -11.43794 -10.84090 -10.51409 -10.27876 -8.37563 -6.51310 1.29102 1.36831 1.40659 1.64769 2.14486 2.40467 2.68579 2.85787 3.48872 3.68526 3.95377 4.08920 4.11975 4.38291 4.47264 4.52152 4.60796 4.70804 4.80584 4.93321 5.35101 5.47555 5.67356 6.04292 6.16934 6.46698 6.70892 7.06644 7.25537 8.75887 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.061795 B = 0.008089 C = 0.007441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 452.998891 B = 3460.719853 C = 3762.190662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.027 3.973 3 Si 0.937 3.063 4 H -0.276 1.276 5 H -0.292 1.292 6 H -0.215 1.215 7 C -0.528 4.528 8 H 0.049 0.951 9 C 0.177 3.823 10 H 0.021 0.979 11 C -0.153 4.153 12 C 0.095 3.905 13 H 0.063 0.937 14 C -0.102 4.102 15 C 0.487 3.513 16 O -0.546 6.546 17 O -0.512 6.512 18 O -0.404 6.404 19 C 0.211 3.789 20 O -0.416 6.416 21 H 0.269 0.731 22 H 0.094 0.906 23 H 0.068 0.932 24 H 0.126 0.874 25 H 0.154 0.846 26 H 0.426 0.574 27 H 0.133 0.867 28 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.479 -7.353 -0.450 17.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.173 4.173 3 Si 0.760 3.240 4 H -0.202 1.202 5 H -0.218 1.218 6 H -0.137 1.137 7 C -0.564 4.564 8 H 0.067 0.933 9 C 0.122 3.878 10 H 0.038 0.962 11 C -0.191 4.191 12 C 0.038 3.962 13 H 0.081 0.919 14 C -0.139 4.139 15 C 0.330 3.670 16 O -0.436 6.436 17 O -0.325 6.325 18 O -0.325 6.325 19 C 0.097 3.903 20 O -0.337 6.337 21 H 0.078 0.922 22 H 0.113 0.887 23 H 0.087 0.913 24 H 0.144 0.856 25 H 0.171 0.829 26 H 0.288 0.712 27 H 0.150 0.850 28 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 15.068 -7.012 -0.192 16.620 hybrid contribution 0.362 0.946 -0.290 1.054 sum 15.429 -6.065 -0.481 16.586 Atomic orbital electron populations 1.70048 1.08340 1.28585 1.50387 1.25947 0.95438 1.03738 0.92189 0.86004 0.81755 0.77575 0.78620 1.20156 1.21818 1.13719 1.21148 0.89679 0.93780 1.51838 0.93281 1.20123 0.93266 0.90256 0.84176 0.96191 1.22578 0.94240 0.98389 1.03910 1.22076 0.93756 0.91847 0.88535 0.91912 1.21486 0.87009 0.96505 1.08867 1.23496 0.92013 0.80720 0.70744 1.90726 1.71508 1.34338 1.47022 1.84495 1.28140 1.35185 1.84727 1.87991 1.76191 1.26006 1.42353 1.23967 0.80977 0.83147 1.02181 1.88478 1.21033 1.77010 1.47226 0.92207 0.88746 0.91277 0.85608 0.82883 0.71220 0.84954 0.94266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.12 13.96 21.45 0.30 -57.82 15 2 C 0.03 1.59 5.47 84.65 0.46 2.05 15 3 Si 0.94 44.94 27.00 68.60 1.85 46.79 15 4 H -0.28 -12.67 7.11 99.48 0.71 -11.97 15 5 H -0.29 -13.94 7.11 99.48 0.71 -13.23 15 6 H -0.21 -9.70 5.30 99.48 0.53 -9.18 15 7 C -0.53 -30.06 9.38 25.60 0.24 -29.82 15 8 H 0.05 3.02 7.99 -2.91 -0.02 2.99 15 9 C 0.18 8.27 2.08 29.94 0.06 8.33 15 10 H 0.02 0.94 7.56 -2.39 -0.02 0.92 15 11 C -0.15 -5.65 4.87 30.77 0.15 -5.50 15 12 C 0.10 3.02 2.29 30.68 0.07 3.09 15 13 H 0.06 2.00 7.97 -2.39 -0.02 1.98 15 14 C -0.10 -2.29 5.53 29.85 0.17 -2.12 15 15 C 0.49 11.60 8.21 71.24 0.58 12.19 15 16 O -0.55 -17.32 16.19 27.03 0.44 -16.88 15 17 O -0.51 -8.51 13.42 -51.39 -0.69 -9.20 15 18 O -0.40 -14.80 9.78 -120.77 -1.18 -15.98 15 19 C 0.21 7.91 7.77 113.37 0.88 8.79 15 20 O -0.42 -19.31 7.43 -126.22 -0.94 -20.24 15 21 H 0.27 15.64 8.31 -92.70 -0.77 14.87 15 22 H 0.09 3.08 8.14 -2.39 -0.02 3.06 15 23 H 0.07 2.65 8.14 -2.39 -0.02 2.63 15 24 H 0.13 2.61 8.14 -2.39 -0.02 2.59 15 25 H 0.15 2.39 8.14 -2.39 -0.02 2.37 15 26 H 0.43 3.52 9.10 -74.06 -0.67 2.84 15 27 H 0.13 4.29 8.14 -2.39 -0.02 4.27 15 28 H 0.04 1.40 8.14 -2.39 -0.02 1.38 15 Total: -1.00 -73.51 242.68 2.72 -70.79 By element: Atomic # 1 Polarization: 5.21 SS G_CDS: 0.32 Total: 5.53 kcal Atomic # 6 Polarization: -5.61 SS G_CDS: 2.62 Total: -2.99 kcal Atomic # 7 Polarization: -58.12 SS G_CDS: 0.30 Total: -57.82 kcal Atomic # 8 Polarization: -59.93 SS G_CDS: -2.37 Total: -62.30 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 1.85 Total: 46.79 kcal Total: -73.51 2.72 -70.79 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034441168.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.919 kcal (2) G-P(sol) polarization free energy of solvation -73.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -215.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -212.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds