Wall clock time and date at job start Mon Mar 30 2020 02:22:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31054 * 1 3 3 Si 1.86803 * 120.00148 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00157 * 3 2 1 5 5 H 1.48494 * 109.46800 * 30.00204 * 3 2 1 6 6 H 1.48499 * 109.46981 * 150.00261 * 3 2 1 7 7 C 1.39386 * 119.99925 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99757 * 179.97438 * 7 2 1 9 9 N 1.36344 * 119.99918 * 0.27779 * 7 2 1 10 10 N 1.39714 * 119.50572 * 359.72313 * 9 7 2 11 11 C 1.30335 * 122.57184 * 179.97438 * 10 9 7 12 12 C 1.41847 * 120.72420 * 359.97438 * 11 10 9 13 13 O 1.21995 * 120.92703 * 180.02562 * 12 11 10 14 14 C 1.47162 * 118.14722 * 0.02562 * 12 11 10 15 15 C 1.39526 * 121.61894 * 179.97438 * 14 12 11 16 16 C 1.36736 * 119.64578 * 180.02562 * 15 14 12 17 17 C 1.38821 * 120.59063 * 359.97018 * 16 15 14 18 18 C 1.37845 * 120.70300 * 0.03182 * 17 16 15 19 19 C 1.37853 * 119.50888 * 179.45261 * 9 7 2 20 20 H 0.97005 * 119.99818 * 359.97438 * 1 2 3 21 21 H 1.07997 * 119.63527 * 179.97438 * 11 10 9 22 22 H 1.08003 * 120.18159 * 0.02562 * 15 14 12 23 23 H 1.07999 * 119.70238 * 179.97438 * 16 15 14 24 24 H 1.08002 * 119.64507 * 180.02562 * 17 16 15 25 25 H 1.07997 * 120.17738 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3105 0.0000 0.0000 3 14 2.2446 1.6177 0.0000 4 1 2.4921 2.0464 -1.4001 5 1 1.4421 2.6526 0.7001 6 1 3.5422 1.4401 0.7000 7 6 2.0075 -1.2071 -0.0005 8 1 3.0875 -1.2071 -0.0010 9 7 1.3257 -2.3879 -0.0068 10 7 -0.0714 -2.3758 -0.0067 11 6 -0.7825 -3.4680 -0.0130 12 6 -0.1561 -4.7406 -0.0209 13 8 -0.8181 -5.7653 -0.0272 14 6 1.3147 -4.7904 -0.0211 15 6 2.0056 -6.0026 -0.0280 16 6 3.3730 -6.0018 -0.0274 17 6 4.0787 -4.8064 -0.0207 18 6 3.4159 -3.5978 -0.0137 19 6 2.0252 -3.5757 -0.0187 20 1 -0.4850 0.8401 0.0004 21 1 -1.8605 -3.4034 -0.0123 22 1 1.4633 -6.9366 -0.0338 23 1 3.9087 -6.9396 -0.0324 24 1 5.1586 -4.8235 -0.0207 25 1 3.9734 -2.6729 -0.0080 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000035179710.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:06 Heat of formation + Delta-G solvation = 52.297093 kcal Electronic energy + Delta-G solvation = -13777.719879 eV Core-core repulsion = 11336.861405 eV Total energy + Delta-G solvation = -2440.858474 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.064 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.85021 -37.05851 -36.54369 -33.47512 -31.91647 -30.13847 -29.07976 -25.60405 -23.71191 -22.98466 -21.14931 -18.53281 -17.67728 -17.37470 -15.56423 -15.09473 -14.29668 -14.27686 -14.11297 -13.41510 -13.36217 -12.88204 -12.55893 -12.03577 -11.63643 -11.27646 -11.24177 -11.20737 -10.69646 -10.38589 -10.02024 -9.50598 -9.00421 -8.33263 -8.13343 -7.29551 -6.77933 -4.31989 1.48850 1.78690 2.66346 2.90833 2.97209 2.99990 3.43209 3.91420 3.92636 4.50210 5.02296 5.22698 5.42127 5.50605 5.69451 5.91182 6.03172 6.47289 6.50874 6.60256 6.69907 6.81653 6.96402 7.08841 7.23849 7.50235 7.58284 8.22636 8.67704 8.89512 9.25493 10.10269 Molecular weight = 216.06amu Principal moments of inertia in cm(-1) A = 0.034372 B = 0.011529 C = 0.008659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.420153 B = 2428.161896 C = 3232.733594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.759 5.759 2 C 0.041 3.959 3 Si 0.938 3.062 4 H -0.268 1.268 5 H -0.274 1.274 6 H -0.261 1.261 7 C -0.313 4.313 8 H 0.129 0.871 9 N -0.184 5.184 10 N -0.125 5.125 11 C -0.111 4.111 12 C 0.359 3.641 13 O -0.552 6.552 14 C -0.231 4.231 15 C -0.024 4.024 16 C -0.197 4.197 17 C -0.076 4.076 18 C -0.158 4.158 19 C 0.133 3.867 20 H 0.278 0.722 21 H 0.171 0.829 22 H 0.123 0.877 23 H 0.113 0.887 24 H 0.116 0.884 25 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.373 -0.228 -0.007 6.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.387 5.387 2 C -0.177 4.177 3 Si 0.761 3.239 4 H -0.193 1.193 5 H -0.198 1.198 6 H -0.185 1.185 7 C -0.446 4.446 8 H 0.146 0.854 9 N 0.038 4.962 10 N 0.052 4.948 11 C -0.298 4.298 12 C 0.252 3.748 13 O -0.439 6.439 14 C -0.239 4.239 15 C -0.043 4.043 16 C -0.218 4.218 17 C -0.097 4.097 18 C -0.179 4.179 19 C 0.018 3.982 20 H 0.090 0.910 21 H 0.188 0.812 22 H 0.141 0.859 23 H 0.131 0.869 24 H 0.134 0.866 25 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 5.582 0.412 0.004 5.597 hybrid contribution 0.493 0.011 -0.019 0.494 sum 6.075 0.423 -0.015 6.090 Atomic orbital electron populations 1.70148 1.06361 1.28480 1.33734 1.25701 0.95777 1.00429 0.95769 0.85739 0.79500 0.79346 0.79269 1.19335 1.19834 1.18528 1.20239 0.92610 0.80628 1.51102 0.85367 1.44392 1.01340 1.03991 1.46503 1.76167 0.87478 1.23658 1.07539 1.25274 1.01092 0.90403 1.13056 1.18943 0.87889 0.89949 0.78041 1.90582 1.66938 1.37364 1.49007 1.20021 0.95675 0.92566 1.15603 1.20584 0.93762 0.96588 0.93360 1.20502 0.94013 0.97557 1.09702 1.20911 0.98961 0.92052 0.97739 1.20732 0.91787 0.98543 1.06866 1.18632 0.92505 0.86207 1.00815 0.91035 0.81187 0.85948 0.86899 0.86561 0.85188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -18.73 11.25 55.52 0.62 -18.10 15 2 C 0.04 0.94 5.49 -17.46 -0.10 0.84 15 3 Si 0.94 17.04 29.55 -169.99 -5.02 12.01 15 4 H -0.27 -4.84 7.11 56.52 0.40 -4.44 15 5 H -0.27 -4.96 7.11 56.52 0.40 -4.56 15 6 H -0.26 -4.55 7.11 56.52 0.40 -4.15 15 7 C -0.31 -7.40 9.52 -15.12 -0.14 -7.54 15 8 H 0.13 2.69 5.71 -52.49 -0.30 2.39 15 9 N -0.18 -4.62 3.70 -9.51 -0.04 -4.65 15 10 N -0.12 -3.24 8.65 30.96 0.27 -2.97 15 11 C -0.11 -2.71 11.31 -16.81 -0.19 -2.90 15 12 C 0.36 8.98 6.96 -34.58 -0.24 8.74 15 13 O -0.55 -14.51 17.35 4.92 0.09 -14.42 15 14 C -0.23 -5.42 5.89 -104.86 -0.62 -6.03 15 15 C -0.02 -0.49 9.62 -39.64 -0.38 -0.87 15 16 C -0.20 -3.41 9.97 -39.91 -0.40 -3.80 15 17 C -0.08 -1.29 10.01 -39.51 -0.40 -1.68 15 18 C -0.16 -3.07 9.32 -39.41 -0.37 -3.44 15 19 C 0.13 3.10 6.56 -83.90 -0.55 2.55 15 20 H 0.28 6.27 8.30 -40.82 -0.34 5.93 15 21 H 0.17 3.73 8.06 -52.49 -0.42 3.31 15 22 H 0.12 2.37 7.79 -52.48 -0.41 1.96 15 23 H 0.11 1.58 8.06 -52.49 -0.42 1.16 15 24 H 0.12 1.53 8.06 -52.49 -0.42 1.10 15 25 H 0.13 2.30 6.04 -52.49 -0.32 1.98 15 LS Contribution 228.50 15.07 3.44 3.44 Total: -1.00 -28.72 228.50 -5.45 -34.17 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: -1.43 Total: 4.68 kcal Atomic # 6 Polarization: -10.77 SS G_CDS: -3.38 Total: -14.15 kcal Atomic # 7 Polarization: -26.59 SS G_CDS: 0.86 Total: -25.73 kcal Atomic # 8 Polarization: -14.51 SS G_CDS: 0.09 Total: -14.42 kcal Atomic # 14 Polarization: 17.04 SS G_CDS: -5.02 Total: 12.01 kcal Total LS contribution 3.44 Total: 3.44 kcal Total: -28.72 -5.45 -34.17 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035179710.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.468 kcal (2) G-P(sol) polarization free energy of solvation -28.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds