Wall clock time and date at job start Mon Mar 30 2020 02:26:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48493 * 109.47326 * 90.00391 * 3 2 1 5 5 H 1.48506 * 109.46545 * 210.00141 * 3 2 1 6 6 H 1.48498 * 109.47210 * 329.99852 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99398 * 180.02562 * 7 2 1 10 10 N 1.46500 * 109.46953 * 179.97438 * 9 7 2 11 11 C 1.34769 * 120.00237 * 179.97438 * 10 9 7 12 12 O 1.21282 * 119.99854 * 0.02562 * 11 10 9 13 13 C 1.50702 * 120.00461 * 179.97438 * 11 10 9 14 14 H 1.09007 * 108.76590 * 319.30404 * 13 11 10 15 15 C 1.54072 * 108.81348 * 77.69877 * 13 11 10 16 16 S 1.83705 * 103.49192 * 124.76694 * 15 13 11 17 17 C 1.84116 * 94.87386 * 18.34242 * 16 15 13 18 18 N 1.46597 * 108.81774 * 200.90123 * 13 11 10 19 19 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 20 20 H 1.09000 * 109.46830 * 299.99601 * 9 7 2 21 21 H 1.08993 * 109.47221 * 59.99458 * 9 7 2 22 22 H 0.97010 * 119.99909 * 0.02562 * 10 9 7 23 23 H 1.08996 * 110.62095 * 243.26506 * 15 13 11 24 24 H 1.09000 * 110.61730 * 6.26890 * 15 13 11 25 25 H 1.08999 * 111.12968 * 83.28072 * 17 16 15 26 26 H 1.08998 * 111.13295 * 207.45910 * 17 16 15 27 27 H 1.00905 * 110.99869 * 331.15789 * 18 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 1.4000 5 1 3.5467 1.4400 -0.7001 6 1 1.4466 2.6526 -0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 7 3.9997 -2.5754 -0.0001 11 6 5.3247 -2.8218 -0.0001 12 8 6.1129 -1.9000 0.0004 13 6 5.8271 -4.2426 0.0003 14 1 5.2063 -4.8338 0.6736 15 6 5.6996 -4.8151 -1.4244 16 16 7.4033 -5.3822 -1.8124 17 6 7.9611 -5.4136 -0.0581 18 7 7.2069 -4.2561 0.4952 19 1 -0.4850 0.8401 0.0004 20 1 3.8751 -0.6798 -0.8895 21 1 3.8745 -0.6809 0.8904 22 1 3.3693 -3.3127 -0.0009 23 1 5.0031 -5.6534 -1.4403 24 1 5.3847 -4.0398 -2.1228 25 1 7.6708 -6.3439 0.4300 26 1 9.0366 -5.2526 0.0152 27 1 7.6741 -3.3863 0.2874 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036667439.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:11 Heat of formation + Delta-G solvation = -32.017671 kcal Electronic energy + Delta-G solvation = -12427.164414 eV Core-core repulsion = 10118.093728 eV Total energy + Delta-G solvation = -2309.070686 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 216.067 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.67727 -36.29540 -34.47506 -32.50779 -30.65604 -27.98093 -26.22672 -23.43165 -21.60036 -20.02494 -18.05900 -17.03046 -16.52199 -15.50773 -15.43155 -15.01742 -14.24376 -13.98345 -13.72770 -13.26188 -12.93560 -12.49451 -12.33432 -12.21904 -11.95537 -11.10305 -10.84167 -10.58907 -10.03998 -9.58882 -9.46834 -8.92313 -8.85730 -8.33522 -7.97486 -6.27662 -4.30918 1.58524 2.01043 2.90529 3.22464 3.29087 3.36799 3.49103 3.99206 4.27677 4.42287 4.80614 4.83647 5.07593 5.14403 5.20281 5.35033 5.44229 6.28720 6.68613 6.92457 6.96278 7.04826 7.27912 7.98348 8.36468 8.60228 8.73995 9.31433 10.84104 Molecular weight = 216.07amu Principal moments of inertia in cm(-1) A = 0.063831 B = 0.006513 C = 0.006269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 438.550444 B = 4298.336490 C = 4465.579400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.079 3.921 3 Si 0.877 3.123 4 H -0.272 1.272 5 H -0.261 1.261 6 H -0.283 1.283 7 C -0.547 4.547 8 H 0.080 0.920 9 C 0.220 3.780 10 N -0.696 5.696 11 C 0.504 3.496 12 O -0.548 6.548 13 C 0.057 3.943 14 H 0.114 0.886 15 C -0.074 4.074 16 S -0.353 6.353 17 C 0.121 3.879 18 N -0.656 5.656 19 H 0.268 0.732 20 H 0.027 0.973 21 H 0.023 0.977 22 H 0.399 0.601 23 H 0.106 0.894 24 H 0.109 0.891 25 H 0.107 0.893 26 H 0.116 0.884 27 H 0.371 0.629 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.442 -10.334 -0.351 15.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.125 4.125 3 Si 0.703 3.297 4 H -0.198 1.198 5 H -0.185 1.185 6 H -0.208 1.208 7 C -0.584 4.584 8 H 0.098 0.902 9 C 0.098 3.902 10 N -0.344 5.344 11 C 0.287 3.713 12 O -0.426 6.426 13 C -0.059 4.059 14 H 0.132 0.868 15 C -0.225 4.225 16 S -0.130 6.130 17 C -0.119 4.119 18 N -0.291 5.291 19 H 0.078 0.922 20 H 0.045 0.955 21 H 0.041 0.959 22 H 0.233 0.767 23 H 0.125 0.875 24 H 0.127 0.873 25 H 0.125 0.875 26 H 0.135 0.865 27 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 12.230 -10.064 -0.781 15.858 hybrid contribution -0.513 0.990 0.119 1.122 sum 11.717 -9.074 -0.662 14.834 Atomic orbital electron populations 1.69876 1.06219 1.27532 1.49085 1.24792 0.94800 0.99192 0.93763 0.86815 0.80537 0.83221 0.79108 1.19777 1.18539 1.20824 1.21057 0.88329 0.95311 1.53738 0.90154 1.19562 0.95452 0.78184 0.97012 1.46147 1.05217 1.11489 1.71534 1.20188 0.83728 0.89833 0.77600 1.90653 1.55341 1.45463 1.51169 1.22334 0.92208 0.96575 0.94790 0.86832 1.24771 0.95240 1.04075 0.98423 1.88353 1.16104 1.89584 1.18979 1.25292 1.01643 0.97256 0.87669 1.60955 1.01314 1.08003 1.58790 0.92164 0.95517 0.95876 0.76715 0.87538 0.87269 0.87508 0.86542 0.80441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.96 13.96 55.43 0.77 -25.19 15 2 C 0.08 2.18 5.47 -17.82 -0.10 2.08 15 3 Si 0.88 21.02 27.47 -169.99 -4.67 16.35 15 4 H -0.27 -6.44 7.11 56.52 0.40 -6.04 15 5 H -0.26 -6.21 6.54 56.52 0.37 -5.84 15 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 15 7 C -0.55 -14.55 9.83 -34.44 -0.34 -14.89 15 8 H 0.08 2.22 7.84 -52.49 -0.41 1.80 15 9 C 0.22 5.20 4.50 -5.19 -0.02 5.18 15 10 N -0.70 -13.19 5.55 -61.47 -0.34 -13.53 15 11 C 0.50 8.97 6.75 -10.99 -0.07 8.90 15 12 O -0.55 -11.72 15.56 5.56 0.09 -11.63 15 13 C 0.06 0.75 3.51 -68.47 -0.24 0.51 15 14 H 0.11 1.28 8.14 -51.93 -0.42 0.86 15 15 C -0.07 -0.89 7.09 37.72 0.27 -0.63 15 16 S -0.35 -4.45 23.45 -107.50 -2.52 -6.97 15 17 C 0.12 1.22 8.23 61.13 0.50 1.72 15 18 N -0.66 -8.36 6.88 -108.68 -0.75 -9.11 15 19 H 0.27 7.33 8.31 -40.82 -0.34 6.99 15 20 H 0.03 0.67 7.20 -51.93 -0.37 0.30 15 21 H 0.02 0.58 7.57 -51.93 -0.39 0.18 15 22 H 0.40 6.53 8.32 -40.82 -0.34 6.19 15 23 H 0.11 1.04 8.14 -51.93 -0.42 0.62 15 24 H 0.11 1.47 7.66 -51.93 -0.40 1.07 15 25 H 0.11 0.90 8.14 -51.93 -0.42 0.47 15 26 H 0.12 0.96 8.14 -51.93 -0.42 0.54 15 27 H 0.37 5.35 7.29 -39.29 -0.29 5.07 15 LS Contribution 245.75 15.07 3.70 3.70 Total: -1.00 -30.77 245.75 -6.78 -37.55 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -3.06 Total: 5.94 kcal Atomic # 6 Polarization: 2.88 SS G_CDS: 0.00 Total: 2.88 kcal Atomic # 7 Polarization: -47.51 SS G_CDS: -0.32 Total: -47.83 kcal Atomic # 8 Polarization: -11.72 SS G_CDS: 0.09 Total: -11.63 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -4.67 Total: 16.35 kcal Atomic # 16 Polarization: -4.45 SS G_CDS: -2.52 Total: -6.97 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -30.77 -6.78 -37.55 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036667439.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.534 kcal (2) G-P(sol) polarization free energy of solvation -30.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds