Wall clock time and date at job start Mon Mar 30 2020 02:34:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00040 * 2 1 4 4 H 1.48501 * 109.47415 * 0.02562 * 3 2 1 5 5 H 1.48506 * 109.46926 * 120.00183 * 3 2 1 6 6 H 1.48500 * 109.47489 * 239.99831 * 3 2 1 7 7 C 1.37874 * 120.00046 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00274 * 16.85551 * 7 2 1 9 9 C 1.50702 * 120.00283 * 196.86414 * 7 2 1 10 10 H 1.09000 * 109.46609 * 305.66736 * 9 7 2 11 11 C 1.47197 * 109.47594 * 185.66510 * 9 7 2 12 12 C 4.80150 * 130.36027 * 179.97438 * 2 1 3 13 13 C 6.16344 * 126.08209 * 182.28598 * 2 1 3 14 14 C 1.39541 * 120.13547 * 205.95047 * 13 12 11 15 15 C 1.37981 * 119.85245 * 179.79369 * 14 13 12 16 16 C 1.38345 * 120.14323 * 0.46362 * 15 14 13 17 17 C 1.38345 * 120.28633 * 359.79215 * 16 15 14 18 18 C 1.37979 * 120.14136 * 359.97438 * 17 16 15 19 19 C 1.53001 * 109.47112 * 65.66090 * 9 7 2 20 20 O 1.42898 * 109.47109 * 185.77644 * 19 9 7 21 21 H 0.96999 * 120.00124 * 174.15293 * 1 2 3 22 22 H 1.07997 * 120.07756 * 0.02795 * 14 13 12 23 23 H 1.08001 * 119.93029 * 180.25636 * 15 14 13 24 24 H 1.07995 * 119.85797 * 179.76615 * 16 15 14 25 25 H 1.07998 * 119.92862 * 179.97438 * 17 16 15 26 26 H 1.08001 * 120.07071 * 179.97438 * 18 17 16 27 27 H 1.08991 * 109.47197 * 305.77648 * 19 9 7 28 28 H 1.09004 * 109.46855 * 65.77831 * 19 9 7 29 29 H 0.96704 * 114.00447 * 180.02562 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2842 2.7465 0.0006 5 1 3.1029 1.6963 1.2125 6 1 3.1030 1.6965 -1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 1.4993 -2.1092 -0.2722 9 6 3.4629 -1.2223 0.3781 10 1 4.0131 -0.5149 -0.2424 11 6 3.9979 -2.5776 0.1693 12 6 4.4245 -3.6587 0.0016 13 6 4.9451 -4.9772 -0.1987 14 6 6.2362 -5.2927 0.2262 15 6 6.7305 -6.5665 0.0340 16 6 5.9525 -7.5272 -0.5870 17 6 4.6735 -7.2193 -1.0153 18 6 4.1657 -5.9506 -0.8248 19 6 3.6152 -0.8350 1.8504 20 8 5.0031 -0.7308 2.1744 21 1 -0.4850 -0.8357 -0.0856 22 1 6.8460 -4.5426 0.7078 23 1 7.7281 -6.8132 0.3661 24 1 6.3453 -8.5217 -0.7385 25 1 4.0713 -7.9736 -1.4998 26 1 3.1673 -5.7113 -1.1600 27 1 3.1281 0.1240 2.0261 28 1 3.1523 -1.5978 2.4765 29 1 5.1751 -0.4880 3.0945 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000038312505.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:11 Heat of formation + Delta-G solvation = 10.801987 kcal Electronic energy + Delta-G solvation = -13032.423618 eV Core-core repulsion = 10693.306124 eV Total energy + Delta-G solvation = -2339.117494 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.089 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.86300 -36.70655 -34.06967 -32.82249 -31.02124 -30.77516 -28.55491 -24.17823 -23.12220 -22.29451 -21.15089 -17.83613 -17.60078 -16.56424 -15.93422 -15.11543 -14.75273 -13.97562 -13.52909 -13.47022 -13.28068 -12.95964 -12.80041 -12.04523 -11.48373 -11.20676 -11.05658 -11.01606 -10.76017 -10.29253 -9.86281 -9.45422 -9.19088 -8.91105 -8.81818 -8.42604 -7.95080 -6.67040 -4.32079 1.26080 1.54459 3.27650 3.36130 3.47284 3.52548 3.57150 4.32229 4.41241 4.81604 4.93550 5.05978 5.12271 5.24709 5.31325 5.58992 5.73045 5.88040 6.16163 6.18444 6.24128 6.40200 6.59942 6.60845 6.81860 6.87159 7.05686 7.17886 7.71515 8.18130 8.26781 8.46255 8.69908 9.38574 10.73202 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.041622 B = 0.006520 C = 0.005857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.560469 B = 4293.754823 C = 4779.487398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.035 3.965 3 Si 1.044 2.956 4 H -0.281 1.281 5 H -0.271 1.271 6 H -0.278 1.278 7 C -0.600 4.600 8 H 0.064 0.936 9 C 0.118 3.882 10 H 0.056 0.944 11 C -0.044 4.044 12 C -0.249 4.249 13 C 0.059 3.941 14 C -0.110 4.110 15 C -0.120 4.120 16 C -0.131 4.131 17 C -0.119 4.119 18 C -0.109 4.109 19 C 0.071 3.929 20 O -0.583 6.583 21 H 0.271 0.729 22 H 0.124 0.876 23 H 0.121 0.879 24 H 0.119 0.881 25 H 0.122 0.878 26 H 0.124 0.876 27 H 0.057 0.943 28 H 0.039 0.961 29 H 0.363 0.637 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.417 -8.617 1.628 13.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.172 4.172 3 Si 0.871 3.129 4 H -0.206 1.206 5 H -0.198 1.198 6 H -0.204 1.204 7 C -0.638 4.638 8 H 0.082 0.918 9 C 0.099 3.901 10 H 0.074 0.926 11 C -0.044 4.044 12 C -0.249 4.249 13 C 0.059 3.941 14 C -0.128 4.128 15 C -0.138 4.138 16 C -0.149 4.149 17 C -0.137 4.137 18 C -0.127 4.127 19 C -0.006 4.006 20 O -0.388 6.388 21 H 0.082 0.918 22 H 0.142 0.858 23 H 0.139 0.861 24 H 0.137 0.863 25 H 0.140 0.860 26 H 0.142 0.858 27 H 0.075 0.925 28 H 0.058 0.942 29 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 10.233 -7.147 1.058 12.526 hybrid contribution -0.030 -1.625 0.494 1.699 sum 10.202 -8.772 1.551 13.544 Atomic orbital electron populations 1.70854 1.06718 1.31327 1.43567 1.25894 0.96195 1.02428 0.92652 0.84065 0.75427 0.75560 0.77867 1.20637 1.19778 1.20366 1.21767 0.92479 0.96896 1.52633 0.91770 1.16547 0.97008 0.84620 0.91884 0.92629 1.23001 0.93216 0.94089 0.94073 1.18880 1.06056 0.93439 1.06486 1.15879 0.92989 0.88217 0.97054 1.21284 0.94811 0.96723 0.99956 1.21021 0.99785 0.93198 0.99823 1.21127 0.94722 0.99238 0.99846 1.21036 0.95927 0.96305 1.00453 1.21329 0.99984 0.92691 0.98677 1.23078 0.79927 0.99821 0.97804 1.86525 1.27024 1.93244 1.31974 0.91824 0.85819 0.86058 0.86317 0.86020 0.85758 0.92491 0.94249 0.79189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.47 13.69 55.43 0.76 -25.71 15 2 C 0.04 0.98 5.31 -17.82 -0.09 0.89 15 3 Si 1.04 24.18 26.28 -169.99 -4.47 19.71 15 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 15 5 H -0.27 -5.77 5.71 56.52 0.32 -5.44 15 6 H -0.28 -6.20 7.11 56.52 0.40 -5.80 15 7 C -0.60 -16.88 8.79 -34.44 -0.30 -17.18 15 8 H 0.06 1.96 7.98 -52.48 -0.42 1.54 15 9 C 0.12 2.96 1.97 -94.56 -0.19 2.77 15 10 H 0.06 1.40 6.81 -51.93 -0.35 1.04 15 11 C -0.04 -1.07 12.26 -37.12 -0.46 -1.53 15 12 C -0.25 -5.61 13.24 -38.85 -0.51 -6.12 15 13 C 0.06 1.10 5.72 -107.02 -0.61 0.48 15 14 C -0.11 -1.74 9.75 -39.19 -0.38 -2.12 15 15 C -0.12 -1.55 10.03 -39.64 -0.40 -1.94 15 16 C -0.13 -1.59 10.04 -39.50 -0.40 -1.99 15 17 C -0.12 -1.58 10.03 -39.64 -0.40 -1.98 15 18 C -0.11 -1.79 9.75 -39.19 -0.38 -2.18 15 19 C 0.07 1.58 6.07 37.16 0.23 1.81 15 20 O -0.58 -11.57 13.42 -35.23 -0.47 -12.04 15 21 H 0.27 8.04 8.73 -40.82 -0.36 7.68 15 22 H 0.12 1.86 8.06 -52.49 -0.42 1.44 15 23 H 0.12 1.20 8.06 -52.49 -0.42 0.78 15 24 H 0.12 1.08 8.06 -52.49 -0.42 0.66 15 25 H 0.12 1.28 8.06 -52.49 -0.42 0.85 15 26 H 0.12 2.03 8.06 -52.49 -0.42 1.61 15 27 H 0.06 1.26 4.81 -51.93 -0.25 1.01 15 28 H 0.04 0.87 8.14 -51.93 -0.42 0.45 15 29 H 0.36 5.13 9.12 45.56 0.42 5.55 15 LS Contribution 262.16 15.07 3.95 3.95 Total: -1.00 -31.40 262.16 -6.50 -37.90 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -2.37 Total: 5.28 kcal Atomic # 6 Polarization: -25.19 SS G_CDS: -3.90 Total: -29.09 kcal Atomic # 7 Polarization: -26.47 SS G_CDS: 0.76 Total: -25.71 kcal Atomic # 8 Polarization: -11.57 SS G_CDS: -0.47 Total: -12.04 kcal Atomic # 14 Polarization: 24.18 SS G_CDS: -4.47 Total: 19.71 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -31.40 -6.50 -37.90 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038312505.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.700 kcal (2) G-P(sol) polarization free energy of solvation -31.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.898 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds