Wall clock time and date at job start Mon Mar 30 2020 02:34:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 119.99935 * 2 1 4 4 H 1.48504 * 109.46935 * 239.99708 * 3 2 1 5 5 H 1.48505 * 109.47129 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47528 * 119.99772 * 3 2 1 7 7 C 1.37875 * 120.00100 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00216 * 186.41127 * 7 2 1 9 9 C 1.50700 * 119.99771 * 6.41076 * 7 2 1 10 10 H 1.09001 * 109.47412 * 328.36614 * 9 7 2 11 11 C 1.47203 * 109.46673 * 88.36797 * 9 7 2 12 12 C 4.11766 * 85.62423 * 221.35526 * 2 1 3 13 13 C 5.34687 * 85.13738 * 230.35134 * 2 1 3 14 14 C 1.39533 * 120.13964 * 170.66696 * 13 12 11 15 15 C 1.37969 * 119.85771 * 179.78561 * 14 13 12 16 16 C 1.38346 * 120.14132 * 0.46779 * 15 14 13 17 17 C 1.38351 * 120.28513 * 359.78600 * 16 15 14 18 18 C 1.37967 * 120.14052 * 359.97438 * 17 16 15 19 19 C 1.52999 * 109.47320 * 208.36282 * 9 7 2 20 20 O 1.42907 * 109.46854 * 65.31055 * 19 9 7 21 21 H 0.96999 * 119.99950 * 0.02562 * 1 2 3 22 22 H 1.08001 * 120.07363 * 0.02562 * 14 13 12 23 23 H 1.08004 * 119.93274 * 180.25038 * 15 14 13 24 24 H 1.08000 * 119.85880 * 179.76659 * 16 15 14 25 25 H 1.07997 * 119.92833 * 179.97438 * 17 16 15 26 26 H 1.07998 * 120.07245 * 179.97438 * 18 17 16 27 27 H 1.08994 * 109.47679 * 185.30865 * 19 9 7 28 28 H 1.09001 * 109.47483 * 305.31767 * 19 9 7 29 29 H 0.96695 * 114.00333 * 179.97438 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0795 -1.1969 0.1050 9 6 1.2581 -2.4951 -0.1446 10 1 0.2706 -2.3998 0.3070 11 6 1.1151 -2.8220 -1.5728 12 6 1.0010 -3.0818 -2.7127 13 6 0.8619 -3.3994 -4.1021 14 6 1.9608 -3.8585 -4.8293 15 6 1.8192 -4.1670 -6.1665 16 6 0.5933 -4.0129 -6.7890 17 6 -0.4989 -3.5532 -6.0750 18 6 -0.3717 -3.2459 -4.7360 19 6 2.0350 -3.6100 0.5584 20 8 2.0673 -3.3547 1.9641 21 1 -0.4850 0.8400 -0.0004 22 1 2.9192 -3.9758 -4.3454 23 1 2.6679 -4.5263 -6.7295 24 1 0.4885 -4.2522 -7.8369 25 1 -1.4531 -3.4346 -6.5667 26 1 -1.2249 -2.8867 -4.1797 27 1 1.5453 -4.5662 0.3740 28 1 3.0536 -3.6428 0.1716 29 1 2.5446 -4.0232 2.4744 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000038312507.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:12 Heat of formation + Delta-G solvation = -9.497672 kcal Electronic energy + Delta-G solvation = -13005.640547 eV Core-core repulsion = 10665.642794 eV Total energy + Delta-G solvation = -2339.997753 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.089 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.95567 -38.18125 -35.80937 -34.33262 -32.45002 -31.84057 -29.87878 -26.86731 -24.35098 -23.35958 -22.79932 -19.36428 -18.60919 -18.21432 -16.88542 -16.63409 -15.90816 -15.66651 -15.25743 -14.94452 -14.32134 -14.31080 -14.07282 -13.85423 -13.21893 -12.83817 -12.52475 -12.31486 -12.25633 -12.12109 -11.81714 -11.20754 -10.79900 -10.73130 -10.46736 -9.88323 -9.26123 -8.25340 -6.37281 0.09380 0.47982 1.35740 1.39534 1.46924 1.89083 2.15442 2.38930 2.96800 3.15802 3.40105 3.95312 4.07943 4.11666 4.27857 4.40240 4.45120 4.57249 4.68628 4.79005 4.89509 5.14401 5.29631 5.42401 5.57324 5.58560 5.64453 5.68355 6.04192 6.09573 6.65040 6.92409 7.14769 7.30361 8.83785 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.025960 B = 0.007397 C = 0.006406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.303529 B = 3784.373040 C = 4370.151800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.012 3.988 3 Si 0.963 3.037 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.263 1.263 7 C -0.519 4.519 8 H 0.060 0.940 9 C 0.118 3.882 10 H 0.049 0.951 11 C -0.102 4.102 12 C -0.246 4.246 13 C 0.013 3.987 14 C -0.121 4.121 15 C -0.113 4.113 16 C -0.117 4.117 17 C -0.115 4.115 18 C -0.127 4.127 19 C 0.107 3.893 20 O -0.577 6.577 21 H 0.266 0.734 22 H 0.123 0.877 23 H 0.158 0.842 24 H 0.162 0.838 25 H 0.153 0.847 26 H 0.111 0.889 27 H 0.045 0.955 28 H 0.043 0.957 29 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.765 -8.521 -10.881 14.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.187 4.187 3 Si 0.787 3.213 4 H -0.196 1.196 5 H -0.204 1.204 6 H -0.187 1.187 7 C -0.556 4.556 8 H 0.078 0.922 9 C 0.099 3.901 10 H 0.067 0.933 11 C -0.103 4.103 12 C -0.246 4.246 13 C 0.013 3.987 14 C -0.139 4.139 15 C -0.131 4.131 16 C -0.135 4.135 17 C -0.133 4.133 18 C -0.146 4.146 19 C 0.029 3.971 20 O -0.383 6.383 21 H 0.075 0.925 22 H 0.141 0.859 23 H 0.176 0.824 24 H 0.180 0.820 25 H 0.171 0.829 26 H 0.129 0.871 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 2.263 -7.881 -11.049 13.759 hybrid contribution 0.402 0.593 0.666 0.978 sum 2.665 -7.288 -10.383 12.962 Atomic orbital electron populations 1.70055 1.07669 1.28027 1.50227 1.25910 0.95774 1.03289 0.93760 0.85533 0.78472 0.78120 0.79180 1.19575 1.20435 1.18718 1.21104 0.93579 0.90577 1.50333 0.92192 1.16105 0.97917 0.94177 0.81867 0.93285 1.23934 0.96394 0.94404 0.95536 1.19884 1.05787 1.06037 0.92871 1.16204 0.95552 1.00593 0.86339 1.21391 0.97393 0.99598 0.95509 1.21436 0.99279 0.99160 0.93200 1.21657 0.92069 0.98325 1.01428 1.21393 1.00801 0.98556 0.92519 1.21368 0.95962 1.00846 0.96376 1.21899 0.98414 0.95529 0.81221 1.86588 1.79495 1.53661 1.18601 0.92534 0.85900 0.82431 0.82043 0.82939 0.87116 0.93730 0.93830 0.76385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.98 12.86 21.45 0.28 -56.70 15 2 C 0.01 0.72 5.45 84.65 0.46 1.18 15 3 Si 0.96 45.63 29.54 68.60 2.03 47.65 15 4 H -0.27 -12.50 7.11 99.48 0.71 -11.79 15 5 H -0.28 -12.82 7.11 99.48 0.71 -12.11 15 6 H -0.26 -11.87 7.11 99.48 0.71 -11.17 15 7 C -0.52 -30.35 8.04 25.60 0.21 -30.14 15 8 H 0.06 3.41 7.82 -2.91 -0.02 3.39 15 9 C 0.12 6.43 2.45 -13.34 -0.03 6.40 15 10 H 0.05 3.02 7.42 -2.39 -0.02 3.00 15 11 C -0.10 -5.42 12.54 31.12 0.39 -5.03 15 12 C -0.25 -11.95 13.24 30.01 0.40 -11.56 15 13 C 0.01 0.52 5.72 -21.41 -0.12 0.39 15 14 C -0.12 -3.84 9.75 22.52 0.22 -3.62 15 15 C -0.11 -2.62 10.03 22.23 0.22 -2.39 15 16 C -0.12 -2.43 10.04 22.32 0.22 -2.20 15 17 C -0.12 -2.84 10.03 22.23 0.22 -2.62 15 18 C -0.13 -4.35 9.75 22.52 0.22 -4.13 15 19 C 0.11 4.67 6.37 71.98 0.46 5.13 15 20 O -0.58 -24.16 13.42 -148.98 -2.00 -26.16 15 21 H 0.27 15.47 8.31 -92.71 -0.77 14.70 15 22 H 0.12 3.75 8.06 -2.91 -0.02 3.73 15 23 H 0.16 2.47 8.06 -2.91 -0.02 2.45 15 24 H 0.16 2.02 8.06 -2.91 -0.02 2.00 15 25 H 0.15 2.75 8.06 -2.91 -0.02 2.73 15 26 H 0.11 3.93 8.06 -2.91 -0.02 3.90 15 27 H 0.04 1.71 8.14 -2.39 -0.02 1.69 15 28 H 0.04 1.78 8.14 -2.39 -0.02 1.76 15 29 H 0.39 10.71 9.12 -74.06 -0.68 10.04 15 Total: -1.00 -73.12 269.81 3.65 -69.47 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: 0.48 Total: 14.33 kcal Atomic # 6 Polarization: -51.46 SS G_CDS: 2.87 Total: -48.60 kcal Atomic # 7 Polarization: -56.98 SS G_CDS: 0.28 Total: -56.70 kcal Atomic # 8 Polarization: -24.16 SS G_CDS: -2.00 Total: -26.16 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.65 kcal Total: -73.12 3.65 -69.47 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038312507.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.970 kcal (2) G-P(sol) polarization free energy of solvation -73.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds