Wall clock time and date at job start Mon Mar 30 2020 02:39:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50700 * 109.47389 * 2 1 4 4 O 1.33935 * 125.33938 * 269.97525 * 3 2 1 5 5 C 1.34975 * 111.57454 * 180.02562 * 4 3 2 6 6 C 1.38987 * 132.70750 * 179.97438 * 5 4 3 7 7 C 1.37917 * 120.01635 * 180.02562 * 6 5 4 8 8 C 1.38619 * 120.64908 * 359.97438 * 7 6 5 9 9 C 1.37939 * 120.14787 * 0.02562 * 8 7 6 10 10 C 1.39043 * 119.65403 * 359.97409 * 9 8 7 11 11 C 1.38651 * 125.33753 * 89.99926 * 3 2 1 12 12 C 1.40967 * 127.30941 * 359.97438 * 11 3 2 13 13 H 1.07997 * 120.00237 * 329.45377 * 12 11 3 14 14 C 1.39782 * 119.99749 * 149.44832 * 12 11 3 15 15 N 1.31008 * 119.99815 * 341.30007 * 14 12 11 16 16 Si 1.86800 * 119.99762 * 161.30216 * 14 12 11 17 17 H 1.48497 * 109.46980 * 90.00237 * 16 14 12 18 18 H 1.48502 * 109.46725 * 210.00137 * 16 14 12 19 19 H 1.48500 * 109.47197 * 329.99967 * 16 14 12 20 20 H 1.09001 * 109.46973 * 59.99942 * 1 2 3 21 21 H 1.09005 * 109.47224 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.47267 * 300.00036 * 1 2 3 23 23 H 1.09002 * 109.47267 * 239.99964 * 2 1 3 24 24 H 1.08996 * 109.47127 * 120.00485 * 2 1 3 25 25 H 1.07995 * 119.99491 * 0.06347 * 6 5 4 26 26 H 1.07995 * 119.67558 * 180.27871 * 7 6 5 27 27 H 1.07995 * 119.92618 * 180.02562 * 8 7 6 28 28 H 1.08002 * 120.17432 * 180.02562 * 9 8 7 29 29 H 0.97001 * 119.99291 * 185.09933 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 2.2911 2.1510 -1.0926 5 6 2.7285 3.3869 -0.7714 6 6 3.1157 4.4789 -1.5391 7 6 3.5281 5.6427 -0.9247 8 6 3.5611 5.7386 0.4578 9 6 3.1805 4.6651 1.2360 10 6 2.7631 3.4872 0.6263 11 6 2.2997 2.1769 1.1311 12 6 2.1590 1.7806 2.4766 13 1 1.4006 1.0627 2.7516 14 6 3.0014 2.3169 3.4547 15 7 4.1302 2.8841 3.1077 16 14 2.5175 2.2247 5.2566 17 1 3.0433 0.9676 5.8466 18 1 3.0872 3.3884 5.9822 19 1 1.0372 2.2450 5.3733 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5139 0.8899 25 1 3.0931 4.4163 -2.6170 26 1 3.8234 6.4894 -1.5265 27 1 3.8856 6.6557 0.9267 28 1 3.2056 4.7394 2.3131 29 1 4.7489 3.1898 3.7894 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000039213690.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:06 Heat of formation + Delta-G solvation = -9.743988 kcal Electronic energy + Delta-G solvation = -14108.672605 eV Core-core repulsion = 11768.664171 eV Total energy + Delta-G solvation = -2340.008434 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.089 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.49791 -38.34489 -36.02020 -34.35743 -32.40757 -30.99804 -29.57155 -27.14295 -24.66322 -23.25751 -22.18378 -21.17719 -18.93859 -17.67897 -16.97432 -16.59087 -16.37262 -16.02779 -15.07153 -14.75624 -14.43507 -14.26376 -13.88570 -13.31371 -13.08468 -12.89707 -12.78117 -12.61321 -12.41895 -12.08088 -11.99551 -11.71334 -11.25869 -10.99748 -10.27239 -9.17742 -8.75025 -8.41901 -6.20519 0.39752 0.75265 1.31335 1.39430 1.52034 1.95921 2.24496 2.45152 2.98789 3.36009 4.06575 4.21535 4.29620 4.37865 4.59356 4.62532 4.70849 4.77913 4.90371 4.97485 5.14339 5.27978 5.30950 5.37134 5.44169 5.61363 5.76254 5.86807 5.99824 6.22716 6.35343 6.80861 6.91313 7.10187 8.45463 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.021524 B = 0.014892 C = 0.009301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.543405 B = 1879.746848 C = 3009.846824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.002 4.002 3 C -0.202 4.202 4 O -0.218 6.218 5 C 0.017 3.983 6 C -0.143 4.143 7 C -0.094 4.094 8 C -0.176 4.176 9 C -0.048 4.048 10 C -0.150 4.150 11 C 0.020 3.980 12 C -0.487 4.487 13 H 0.079 0.921 14 C 0.039 3.961 15 N -0.833 5.833 16 Si 0.976 3.024 17 H -0.262 1.262 18 H -0.269 1.269 19 H -0.262 1.262 20 H 0.046 0.954 21 H 0.082 0.918 22 H 0.040 0.960 23 H 0.069 0.931 24 H 0.073 0.927 25 H 0.142 0.858 26 H 0.167 0.833 27 H 0.144 0.856 28 H 0.108 0.892 29 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.962 2.076 -2.246 3.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.040 4.040 3 C -0.248 4.248 4 O -0.123 6.123 5 C -0.031 4.031 6 C -0.161 4.161 7 C -0.112 4.112 8 C -0.194 4.194 9 C -0.067 4.067 10 C -0.152 4.152 11 C 0.018 3.982 12 C -0.518 4.518 13 H 0.097 0.903 14 C -0.174 4.174 15 N -0.461 5.461 16 Si 0.797 3.203 17 H -0.187 1.187 18 H -0.194 1.194 19 H -0.186 1.186 20 H 0.065 0.935 21 H 0.101 0.899 22 H 0.059 0.941 23 H 0.087 0.913 24 H 0.092 0.908 25 H 0.160 0.840 26 H 0.184 0.816 27 H 0.161 0.839 28 H 0.126 0.874 29 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.826 2.131 -2.425 3.708 hybrid contribution 0.089 -0.114 1.004 1.014 sum -1.737 2.017 -1.421 3.017 Atomic orbital electron populations 1.21710 0.94438 1.02112 1.00957 1.19541 0.95919 0.86640 1.01872 1.22882 1.23014 0.96364 0.82580 1.83422 1.71600 1.21763 1.35515 1.20216 1.01757 0.86601 0.94498 1.20145 1.05900 0.90446 0.99649 1.21110 0.98787 0.96838 0.94449 1.21249 1.04849 0.98927 0.94411 1.20756 0.94872 0.91359 0.99674 1.20364 1.05359 0.96284 0.93170 1.18952 0.95670 0.89684 0.93927 1.18781 1.17524 1.24820 0.90655 0.90337 1.26586 0.93566 0.92024 1.05252 1.69988 1.07294 1.31507 1.37333 0.85301 0.79603 0.78932 0.76474 1.18706 1.19360 1.18561 0.93529 0.89916 0.94118 0.91263 0.90818 0.84012 0.81586 0.83867 0.87442 0.90615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.74 9.89 71.98 0.71 -4.03 15 2 C 0.00 -0.10 6.28 29.85 0.19 0.08 15 3 C -0.20 -10.56 6.66 25.78 0.17 -10.39 15 4 O -0.22 -11.44 10.52 -5.71 -0.06 -11.50 15 5 C 0.02 0.88 7.36 22.92 0.17 1.05 15 6 C -0.14 -5.74 10.06 22.37 0.23 -5.52 15 7 C -0.09 -3.29 10.01 22.28 0.22 -3.07 15 8 C -0.18 -6.89 10.04 22.29 0.22 -6.66 15 9 C -0.05 -2.37 8.77 22.39 0.20 -2.18 15 10 C -0.15 -8.18 5.80 -20.06 -0.12 -8.30 15 11 C 0.02 1.14 5.75 -19.96 -0.11 1.02 15 12 C -0.49 -26.89 8.89 23.31 0.21 -26.68 15 13 H 0.08 4.17 7.91 -2.91 -0.02 4.14 15 14 C 0.04 2.01 4.97 85.19 0.42 2.43 15 15 N -0.83 -44.53 10.24 21.81 0.22 -44.31 15 16 Si 0.98 39.16 29.60 68.60 2.03 41.19 15 17 H -0.26 -10.09 7.11 99.48 0.71 -9.38 15 18 H -0.27 -10.32 7.11 99.48 0.71 -9.61 15 19 H -0.26 -10.37 7.11 99.48 0.71 -9.66 15 20 H 0.05 1.61 8.14 -2.39 -0.02 1.59 15 21 H 0.08 2.27 8.14 -2.38 -0.02 2.25 15 22 H 0.04 1.53 8.14 -2.39 -0.02 1.51 15 23 H 0.07 2.58 8.14 -2.39 -0.02 2.56 15 24 H 0.07 3.08 7.92 -2.39 -0.02 3.06 15 25 H 0.14 4.70 8.06 -2.91 -0.02 4.68 15 26 H 0.17 4.08 8.06 -2.91 -0.02 4.06 15 27 H 0.14 4.51 8.06 -2.91 -0.02 4.49 15 28 H 0.11 5.49 6.33 -2.91 -0.02 5.47 15 29 H 0.28 13.80 8.31 -92.71 -0.77 13.03 15 Total: -1.00 -64.49 253.38 5.84 -58.64 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: 1.14 Total: 18.20 kcal Atomic # 6 Polarization: -64.74 SS G_CDS: 2.51 Total: -62.23 kcal Atomic # 7 Polarization: -44.53 SS G_CDS: 0.22 Total: -44.31 kcal Atomic # 8 Polarization: -11.44 SS G_CDS: -0.06 Total: -11.50 kcal Atomic # 14 Polarization: 39.16 SS G_CDS: 2.03 Total: 41.19 kcal Total: -64.49 5.84 -58.64 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039213690.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.901 kcal (2) G-P(sol) polarization free energy of solvation -64.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds