Wall clock time and date at job start Mon Mar 30 2020 03:02:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.53003 * 109.46947 * 246.61390 * 3 2 1 5 5 N 1.46496 * 109.46857 * 180.02562 * 4 3 2 6 6 C 1.38858 * 119.99933 * 179.97438 * 5 4 3 7 7 C 1.39568 * 119.84017 * 359.72786 * 6 5 4 8 8 C 1.36345 * 120.16049 * 179.72222 * 7 6 5 9 9 C 1.40890 * 119.83590 * 0.54878 * 8 7 6 10 10 C 1.41133 * 120.15850 * 179.70531 * 9 8 7 11 11 H 1.07996 * 120.00189 * 204.63062 * 10 9 8 12 12 C 1.39867 * 119.99706 * 24.62108 * 10 9 8 13 13 N 1.30899 * 120.00270 * 17.96986 * 12 10 9 14 14 Si 1.86808 * 119.99673 * 197.96984 * 12 10 9 15 15 H 1.48492 * 109.47009 * 359.97438 * 14 12 10 16 16 H 1.48495 * 109.46924 * 120.00060 * 14 12 10 17 17 H 1.48501 * 109.46721 * 239.99811 * 14 12 10 18 18 C 1.40888 * 119.68622 * 359.72242 * 9 8 7 19 19 C 1.36338 * 119.83703 * 0.02562 * 18 9 8 20 20 H 1.08997 * 109.47221 * 126.61588 * 3 2 1 21 21 H 1.09002 * 109.47093 * 6.61021 * 3 2 1 22 22 H 1.08997 * 109.46999 * 60.00061 * 4 3 2 23 23 H 1.09002 * 109.46923 * 299.99735 * 4 3 2 24 24 H 0.96996 * 120.00484 * 0.02562 * 5 4 3 25 25 H 1.07997 * 119.92406 * 359.97299 * 7 6 5 26 26 H 1.08000 * 120.08368 * 180.27732 * 8 7 6 27 27 H 0.97001 * 120.00134 * 179.97438 * 13 12 10 28 28 H 1.08003 * 120.07987 * 179.97438 * 18 9 8 29 29 H 1.08007 * 119.91918 * 179.97438 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1177 0.5735 1.3240 5 7 4.5827 0.5747 1.3238 6 6 5.2768 1.0529 2.4273 7 6 4.5754 1.5369 3.5326 8 6 5.2503 2.0028 4.6218 9 6 6.6592 2.0055 4.6252 10 6 7.3646 2.4919 5.7466 11 1 8.3706 2.8674 5.6305 12 6 6.7608 2.4880 7.0082 13 7 5.7136 1.7346 7.2303 14 14 7.4489 3.5578 8.3763 15 1 8.6271 4.3083 7.8726 16 1 6.4073 4.5153 8.8272 17 1 7.8595 2.6998 9.5166 18 6 7.3605 1.5207 3.5036 19 6 6.6724 1.0530 2.4234 20 1 2.9711 0.6137 -0.8248 21 1 2.9718 -1.0200 -0.1183 22 1 2.7547 -0.0396 2.1489 23 1 2.7540 1.5942 1.4423 24 1 5.0679 0.2421 0.5525 25 1 3.4954 1.5387 3.5267 26 1 4.7062 2.3729 5.4783 27 1 5.2951 1.7316 8.1054 28 1 8.4405 1.5202 3.4991 29 1 7.2087 0.6814 1.5627 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051601598.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:20 Heat of formation + Delta-G solvation = 42.762979 kcal Electronic energy + Delta-G solvation = -13092.880078 eV Core-core repulsion = 10787.441268 eV Total energy + Delta-G solvation = -2305.438810 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.096 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.15309 -36.97337 -35.28849 -33.29144 -31.06153 -29.48629 -28.22570 -24.73774 -23.30695 -21.01161 -19.95996 -17.76838 -17.22826 -15.92649 -15.54888 -15.06147 -14.94335 -13.91819 -13.42489 -13.28468 -12.94228 -12.65257 -12.44974 -12.10048 -11.85614 -11.61547 -11.36097 -11.08895 -11.04506 -10.79090 -10.47733 -9.71696 -9.31668 -9.26712 -8.58685 -7.52107 -6.67096 -6.44370 -4.06114 2.60226 2.66275 2.88575 3.07796 3.14912 3.20101 3.32444 3.68958 4.04306 4.52989 4.73997 4.89274 4.96994 5.26325 5.78125 5.92941 5.94482 6.23771 6.29379 6.86372 6.91439 7.17580 7.33143 7.42325 7.50076 7.66352 7.80816 8.13249 8.23829 8.43910 8.63996 8.76213 9.04044 9.12201 10.35053 Molecular weight = 216.10amu Principal moments of inertia in cm(-1) A = 0.051712 B = 0.005670 C = 0.005190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 541.331560 B = 4936.724635 C = 5394.157982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C 0.215 3.785 3 C -0.036 4.036 4 C 0.143 3.857 5 N -0.761 5.761 6 C 0.087 3.913 7 C -0.162 4.162 8 C -0.126 4.126 9 C 0.076 3.924 10 C -0.466 4.466 11 H 0.073 0.927 12 C 0.074 3.926 13 N -0.806 5.806 14 Si 0.902 3.098 15 H -0.262 1.262 16 H -0.274 1.274 17 H -0.277 1.277 18 C -0.189 4.189 19 C -0.154 4.154 20 H 0.112 0.888 21 H 0.112 0.888 22 H 0.057 0.943 23 H 0.056 0.944 24 H 0.386 0.614 25 H 0.088 0.912 26 H 0.118 0.882 27 H 0.276 0.724 28 H 0.092 0.908 29 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.653 -1.765 -8.455 8.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.117 5.117 2 C -0.103 4.103 3 C -0.077 4.077 4 C 0.016 3.984 5 N -0.399 5.399 6 C -0.009 4.009 7 C -0.184 4.184 8 C -0.146 4.146 9 C 0.073 3.927 10 C -0.497 4.497 11 H 0.092 0.908 12 C -0.141 4.141 13 N -0.433 5.433 14 Si 0.727 3.273 15 H -0.186 1.186 16 H -0.200 1.200 17 H -0.203 1.203 18 C -0.209 4.209 19 C -0.176 4.176 20 H 0.130 0.870 21 H 0.130 0.870 22 H 0.075 0.925 23 H 0.074 0.926 24 H 0.219 0.781 25 H 0.106 0.894 26 H 0.136 0.864 27 H 0.087 0.913 28 H 0.110 0.890 29 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -3.686 -1.795 -8.170 9.141 hybrid contribution 0.856 0.244 0.462 1.003 sum -2.830 -1.551 -7.708 8.356 Atomic orbital electron populations 1.81229 1.13027 1.08969 1.08469 1.28970 0.95071 0.93068 0.93239 1.19438 0.81791 1.05146 1.01313 1.20846 0.83276 1.00226 0.94074 1.43685 1.02543 1.75033 1.18598 1.17269 0.90562 1.04619 0.88499 1.20112 0.97162 1.06528 0.94594 1.20944 0.94633 1.02193 0.96836 1.17520 0.91869 0.91160 0.92151 1.19411 1.01164 1.37427 0.91687 0.90847 1.25809 0.94427 0.94009 0.99872 1.69858 1.19160 1.30743 1.23547 0.86365 0.79894 0.80563 0.80446 1.18603 1.19958 1.20273 1.20552 0.97551 1.06771 0.96024 1.19798 0.91576 1.07387 0.98889 0.87002 0.86987 0.92531 0.92596 0.78071 0.89382 0.86385 0.91329 0.88991 0.89455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -6.22 18.54 42.15 0.78 -5.43 15 2 C 0.21 2.37 15.43 -20.76 -0.32 2.05 15 3 C -0.04 -0.29 5.82 -29.52 -0.17 -0.46 15 4 C 0.14 1.76 4.85 -4.04 -0.02 1.74 15 5 N -0.76 -11.33 5.70 -58.50 -0.33 -11.66 15 6 C 0.09 1.77 6.67 -83.69 -0.56 1.21 15 7 C -0.16 -3.66 9.23 -39.77 -0.37 -4.02 15 8 C -0.13 -3.24 8.64 -39.26 -0.34 -3.58 15 9 C 0.08 2.01 5.57 -106.79 -0.60 1.42 15 10 C -0.47 -12.47 9.03 -37.87 -0.34 -12.81 15 11 H 0.07 1.90 7.91 -52.49 -0.41 1.49 15 12 C 0.07 1.89 5.13 -17.34 -0.09 1.80 15 13 N -0.81 -21.18 10.96 55.54 0.61 -20.57 15 14 Si 0.90 19.03 29.60 -169.99 -5.03 14.00 15 15 H -0.26 -5.47 7.11 56.52 0.40 -5.07 15 16 H -0.27 -5.70 7.11 56.52 0.40 -5.30 15 17 H -0.28 -5.77 7.11 56.52 0.40 -5.36 15 18 C -0.19 -4.53 9.74 -39.26 -0.38 -4.91 15 19 C -0.15 -3.28 9.82 -39.77 -0.39 -3.67 15 20 H 0.11 0.66 8.14 -51.93 -0.42 0.24 15 21 H 0.11 0.68 8.14 -51.93 -0.42 0.25 15 22 H 0.06 0.77 7.94 -51.93 -0.41 0.35 15 23 H 0.06 0.74 7.91 -51.93 -0.41 0.33 15 24 H 0.39 4.68 8.47 -40.82 -0.35 4.34 15 25 H 0.09 1.81 6.68 -52.49 -0.35 1.46 15 26 H 0.12 3.17 6.16 -52.49 -0.32 2.84 15 27 H 0.28 6.63 8.30 -40.82 -0.34 6.29 15 28 H 0.09 2.08 8.06 -52.48 -0.42 1.66 15 29 H 0.09 1.59 8.06 -52.48 -0.42 1.17 15 LS Contribution 261.81 15.07 3.95 3.95 Total: -1.00 -29.59 261.81 -6.69 -36.28 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -3.08 Total: 4.68 kcal Atomic # 6 Polarization: -17.66 SS G_CDS: -3.57 Total: -21.23 kcal Atomic # 7 Polarization: -38.72 SS G_CDS: 1.06 Total: -37.66 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -5.03 Total: 14.00 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -29.59 -6.69 -36.28 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051601598.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.044 kcal (2) G-P(sol) polarization free energy of solvation -29.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds