Wall clock time and date at job start Mon Mar 30 2020 02:29:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30692 * 1 3 3 Si 1.86801 * 120.00167 * 2 1 4 4 H 1.48498 * 109.47001 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47203 * 300.00006 * 3 2 1 6 6 H 1.48494 * 109.47143 * 59.99876 * 3 2 1 7 7 C 1.40301 * 119.99841 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99627 * 180.02562 * 7 2 1 9 9 C 1.39669 * 119.99964 * 359.97438 * 7 2 1 10 10 C 1.40144 * 126.95929 * 359.97438 * 9 7 2 11 11 N 1.32275 * 107.87306 * 179.75717 * 10 9 7 12 12 C 1.32110 * 110.03606 * 0.43055 * 11 10 9 13 13 C 1.47521 * 125.39225 * 179.82230 * 12 11 10 14 14 C 1.40129 * 120.58483 * 359.69502 * 13 12 11 15 15 C 1.38335 * 118.24327 * 179.97438 * 14 13 12 16 16 N 1.32449 * 119.21162 * 0.02562 * 15 14 13 17 17 C 1.31896 * 121.13247 * 359.97438 * 16 15 14 18 18 N 1.31570 * 121.94018 * 0.02562 * 17 16 15 19 19 N 1.36704 * 109.22209 * 359.56013 * 12 11 10 20 20 H 0.97005 * 126.60713 * 180.27865 * 19 12 11 21 21 H 0.97006 * 120.00160 * 359.97438 * 1 2 3 22 22 H 1.07999 * 126.06163 * 0.02562 * 10 9 7 23 23 H 1.08001 * 120.88240 * 0.02562 * 14 13 12 24 24 H 1.08001 * 120.39515 * 179.72944 * 15 14 13 25 25 H 1.08002 * 119.02645 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2410 1.6177 0.0000 4 1 3.7009 1.3463 -0.0006 5 1 1.8823 2.3965 -1.2125 6 1 1.8822 2.3964 1.2124 7 6 2.0084 -1.2151 -0.0005 8 1 3.0884 -1.2150 -0.0001 9 6 1.3100 -2.4246 -0.0005 10 6 -0.0811 -2.5944 0.0005 11 7 -0.3316 -3.8932 -0.0053 12 6 0.8013 -4.5727 -0.0006 13 6 0.9155 -6.0435 -0.0009 14 6 -0.2320 -6.8477 -0.0001 15 6 -0.0687 -8.2214 -0.0010 16 7 1.1556 -8.7267 -0.0020 17 6 2.2167 -7.9434 -0.0027 18 7 2.1136 -6.6317 -0.0020 19 7 1.8512 -3.6972 -0.0012 20 1 2.7942 -3.9248 -0.0022 21 1 -0.4851 0.8401 0.0004 22 1 -0.8179 -1.8048 0.0010 23 1 -1.2179 -6.4068 0.0004 24 1 -0.9292 -8.8740 0.0040 25 1 3.1992 -8.3919 -0.0032 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074281735.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:05 Heat of formation + Delta-G solvation = 84.424661 kcal Electronic energy + Delta-G solvation = -13200.264072 eV Core-core repulsion = 10793.091505 eV Total energy + Delta-G solvation = -2407.172567 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.071 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.42667 -39.61626 -34.13466 -33.11589 -31.75810 -31.02440 -28.61331 -25.74574 -23.70480 -23.13316 -20.28056 -19.62317 -18.23158 -16.75618 -16.31874 -15.61311 -14.77296 -14.45850 -14.34464 -13.23163 -13.21253 -12.94930 -12.89946 -12.28153 -11.50250 -11.31973 -11.05539 -10.49077 -10.34315 -10.32612 -9.71077 -9.20526 -8.75204 -8.69621 -8.61613 -7.13460 -7.01862 -4.55311 1.32582 1.54133 2.78479 2.92751 2.98254 3.45684 3.68598 4.18229 4.39617 4.56763 4.66118 4.78328 5.10296 5.28268 5.63943 5.70792 6.09580 6.36981 6.63837 6.78378 6.94870 7.25974 7.35301 7.58174 7.69793 8.12475 8.46793 8.58863 8.67484 8.96775 9.56178 9.91852 Molecular weight = 216.07amu Principal moments of inertia in cm(-1) A = 0.080246 B = 0.006513 C = 0.006037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 348.842974 B = 4297.993452 C = 4636.994122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.781 5.781 2 C 0.075 3.925 3 Si 0.934 3.066 4 H -0.260 1.260 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.429 4.429 8 H 0.082 0.918 9 C 0.209 3.791 10 C -0.095 4.095 11 N -0.435 5.435 12 C 0.066 3.934 13 C 0.290 3.710 14 C -0.225 4.225 15 C 0.141 3.859 16 N -0.563 5.563 17 C 0.297 3.703 18 N -0.551 5.551 19 N -0.597 5.597 20 H 0.407 0.593 21 H 0.287 0.713 22 H 0.195 0.805 23 H 0.148 0.852 24 H 0.159 0.841 25 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.675 -3.639 0.013 4.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.406 5.406 2 C -0.146 4.146 3 Si 0.757 3.243 4 H -0.184 1.184 5 H -0.195 1.195 6 H -0.195 1.195 7 C -0.465 4.465 8 H 0.100 0.900 9 C 0.092 3.908 10 C -0.255 4.255 11 N -0.155 5.155 12 C -0.174 4.174 13 C 0.150 3.850 14 C -0.249 4.249 15 C -0.021 4.021 16 N -0.280 5.280 17 C 0.008 3.992 18 N -0.269 5.269 19 N -0.209 5.209 20 H 0.243 0.757 21 H 0.099 0.901 22 H 0.211 0.789 23 H 0.165 0.835 24 H 0.176 0.824 25 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 1.493 -4.470 0.006 4.713 hybrid contribution 0.828 1.351 -0.001 1.584 sum 2.320 -3.119 0.005 3.887 Atomic orbital electron populations 1.69490 1.07682 1.29715 1.33742 1.25887 0.94991 1.01565 0.92162 0.85831 0.80245 0.79318 0.78858 1.18390 1.19483 1.19479 1.18652 0.94735 0.88365 1.44721 0.89992 1.19335 0.93675 0.83260 0.94555 1.23765 0.94236 0.90972 1.16576 1.69425 1.26100 1.06873 1.13096 1.19373 0.84035 0.87553 1.26486 1.18733 0.88200 0.90309 0.87775 1.22652 1.01162 0.94802 1.06319 1.22907 0.94949 0.92899 0.91356 1.68294 0.99621 1.41488 1.18576 1.24580 0.97686 0.85699 0.91273 1.68361 1.27133 1.13118 1.18308 1.42877 1.08080 1.05918 1.64014 0.75685 0.90113 0.78861 0.83455 0.82385 0.79794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.29 10.32 55.57 0.57 -17.72 15 2 C 0.07 1.71 5.50 -17.26 -0.09 1.61 15 3 Si 0.93 16.95 29.56 -169.99 -5.03 11.92 15 4 H -0.26 -4.68 7.11 56.52 0.40 -4.28 15 5 H -0.27 -4.83 7.11 56.52 0.40 -4.43 15 6 H -0.27 -4.83 7.11 56.52 0.40 -4.43 15 7 C -0.43 -10.44 9.44 -38.27 -0.36 -10.80 15 8 H 0.08 1.87 7.85 -52.48 -0.41 1.45 15 9 C 0.21 5.38 6.95 -83.70 -0.58 4.80 15 10 C -0.09 -2.51 10.86 -16.65 -0.18 -2.69 15 11 N -0.43 -11.21 10.82 -10.17 -0.11 -11.32 15 12 C 0.07 1.60 7.86 -154.02 -1.21 0.39 15 13 C 0.29 6.25 6.79 -82.66 -0.56 5.69 15 14 C -0.23 -4.21 9.82 -38.84 -0.38 -4.59 15 15 C 0.14 2.26 11.30 -17.25 -0.19 2.06 15 16 N -0.56 -9.54 10.43 -14.65 -0.15 -9.69 15 17 C 0.30 5.04 12.28 -92.26 -1.13 3.91 15 18 N -0.55 -10.96 10.40 -11.19 -0.12 -11.08 15 19 N -0.60 -14.27 6.28 -8.24 -0.05 -14.32 15 20 H 0.41 8.77 8.96 -40.82 -0.37 8.40 15 21 H 0.29 6.00 8.29 -40.82 -0.34 5.66 15 22 H 0.20 5.15 5.75 -52.49 -0.30 4.85 15 23 H 0.15 2.67 7.90 -52.49 -0.41 2.25 15 24 H 0.16 1.91 8.06 -52.49 -0.42 1.48 15 25 H 0.19 2.40 8.06 -52.49 -0.42 1.98 15 LS Contribution 234.80 15.07 3.54 3.54 Total: -1.00 -27.83 234.80 -7.52 -35.35 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: -1.47 Total: 12.94 kcal Atomic # 6 Polarization: 5.08 SS G_CDS: -4.70 Total: 0.38 kcal Atomic # 7 Polarization: -64.28 SS G_CDS: 0.14 Total: -64.13 kcal Atomic # 14 Polarization: 16.95 SS G_CDS: -5.03 Total: 11.92 kcal Total LS contribution 3.54 Total: 3.54 kcal Total: -27.83 -7.52 -35.35 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074281735.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.772 kcal (2) G-P(sol) polarization free energy of solvation -27.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.347 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds