Wall clock time and date at job start Mon Mar 30 2020 02:27:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31201 * 1 3 3 Si 1.86799 * 120.00030 * 2 1 4 4 H 1.48505 * 109.47293 * 270.00477 * 3 2 1 5 5 H 1.48500 * 109.46818 * 30.00120 * 3 2 1 6 6 H 1.48496 * 109.47314 * 150.00054 * 3 2 1 7 7 C 1.39107 * 119.99753 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99750 * 179.97438 * 7 2 1 9 9 N 1.37272 * 120.00127 * 359.97438 * 7 2 1 10 10 N 1.40605 * 127.49911 * 8.65400 * 9 7 2 11 11 N 1.28855 * 106.94788 * 180.02562 * 10 9 7 12 12 N 1.28362 * 110.72968 * 359.72400 * 11 10 9 13 13 C 1.31790 * 110.54906 * 0.46167 * 12 11 10 14 14 C 1.47774 * 126.62041 * 179.81973 * 13 12 11 15 15 C 1.39626 * 120.15107 * 210.29010 * 14 13 12 16 16 C 1.37940 * 119.84692 * 179.97438 * 15 14 13 17 17 C 1.38375 * 120.15062 * 0.02562 * 16 15 14 18 18 C 1.38379 * 120.30072 * 0.02562 * 17 16 15 19 19 C 1.37934 * 120.14917 * 359.97438 * 18 17 16 20 20 H 0.97001 * 119.99830 * 0.02562 * 1 2 3 21 21 H 1.08000 * 120.07247 * 359.97438 * 15 14 13 22 22 H 1.07997 * 119.92499 * 180.02562 * 16 15 14 23 23 H 1.08001 * 119.84602 * 179.72076 * 17 16 15 24 24 H 1.08003 * 119.92189 * 179.97438 * 18 17 16 25 25 H 1.08001 * 120.07344 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3120 0.0000 0.0000 3 14 2.2460 1.6177 0.0000 4 1 2.4934 2.0465 -1.4001 5 1 1.4434 2.6526 0.7001 6 1 3.5435 1.4402 0.7000 7 6 2.0075 -1.2047 -0.0005 8 1 3.0875 -1.2047 -0.0010 9 7 1.3211 -2.3935 -0.0005 10 7 -0.0620 -2.5833 -0.1679 11 7 -0.2781 -3.8518 -0.0995 12 7 0.8197 -4.4902 0.0877 13 6 1.8347 -3.6530 0.1631 14 6 3.2539 -4.0052 0.3765 15 6 4.1037 -3.1198 1.0423 16 6 5.4273 -3.4551 1.2386 17 6 5.9134 -4.6656 0.7768 18 6 5.0769 -5.5472 0.1152 19 6 3.7513 -5.2245 -0.0878 20 1 -0.4850 0.8401 -0.0004 21 1 3.7256 -2.1745 1.4028 22 1 6.0856 -2.7714 1.7538 23 1 6.9516 -4.9212 0.9291 24 1 5.4628 -6.4902 -0.2430 25 1 3.0994 -5.9137 -0.6040 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075576835.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:45 Heat of formation + Delta-G solvation = 126.979317 kcal Electronic energy + Delta-G solvation = -13613.448484 eV Core-core repulsion = 11208.121225 eV Total energy + Delta-G solvation = -2405.327259 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.071 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.95963 -38.43132 -34.75528 -32.36998 -31.34835 -30.45376 -28.91617 -26.32718 -23.02751 -22.49179 -21.41690 -20.01877 -18.32951 -16.48179 -15.96952 -14.97676 -14.79366 -14.50976 -14.11343 -13.35121 -13.06876 -12.43553 -12.34260 -11.92586 -11.66665 -11.45883 -10.90832 -10.82242 -10.59216 -10.50005 -10.12381 -9.30572 -9.11998 -8.90472 -8.54378 -7.82510 -7.12468 -4.92571 1.50554 1.81535 2.67138 2.80949 2.89003 3.09338 3.46806 3.86574 4.11045 4.32450 4.59395 5.22987 5.29926 5.36477 5.54141 5.87120 5.90710 6.19638 6.33903 6.45347 6.60279 6.75730 6.86711 6.93203 7.21923 7.34380 7.43281 7.62100 8.17316 8.71185 9.84358 10.39337 Molecular weight = 216.07amu Principal moments of inertia in cm(-1) A = 0.027755 B = 0.011832 C = 0.008482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.578396 B = 2365.888120 C = 3300.331017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.743 5.743 2 C 0.045 3.955 3 Si 0.946 3.054 4 H -0.263 1.263 5 H -0.269 1.269 6 H -0.256 1.256 7 C -0.293 4.293 8 H 0.135 0.865 9 N -0.147 5.147 10 N -0.118 5.118 11 N -0.141 5.141 12 N -0.336 5.336 13 C 0.087 3.913 14 C 0.034 3.966 15 C -0.116 4.116 16 C -0.119 4.119 17 C -0.134 4.134 18 C -0.122 4.122 19 C -0.096 4.096 20 H 0.290 0.710 21 H 0.135 0.865 22 H 0.120 0.880 23 H 0.116 0.884 24 H 0.119 0.881 25 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.256 0.040 1.247 11.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.368 5.368 2 C -0.178 4.178 3 Si 0.767 3.233 4 H -0.188 1.188 5 H -0.194 1.194 6 H -0.179 1.179 7 C -0.434 4.434 8 H 0.153 0.847 9 N 0.073 4.927 10 N -0.102 5.102 11 N -0.131 5.131 12 N -0.200 5.200 13 C -0.175 4.175 14 C 0.030 3.970 15 C -0.136 4.136 16 C -0.137 4.137 17 C -0.152 4.152 18 C -0.141 4.141 19 C -0.116 4.116 20 H 0.101 0.899 21 H 0.153 0.847 22 H 0.138 0.862 23 H 0.134 0.866 24 H 0.137 0.863 25 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 9.530 -0.268 1.080 9.594 hybrid contribution 1.127 1.280 0.060 1.706 sum 10.656 1.012 1.139 10.765 Atomic orbital electron populations 1.70089 1.06721 1.30081 1.29946 1.25959 0.95937 1.01279 0.94622 0.85618 0.79608 0.78261 0.79785 1.18774 1.19375 1.17931 1.20552 0.92941 0.80258 1.49607 0.84748 1.47819 1.06428 1.05670 1.32741 1.82964 0.89596 1.09080 1.28553 1.77481 1.18423 1.00027 1.17180 1.74102 0.94546 1.27901 1.23452 1.22743 0.94923 0.82723 1.17104 1.17467 0.87529 0.94595 0.97370 1.21496 0.93432 1.00300 0.98368 1.20966 0.95220 0.96912 1.00647 1.21096 0.99356 0.94748 1.00039 1.20974 0.93559 0.99506 1.00016 1.21191 0.95160 0.96051 0.99211 0.89930 0.84742 0.86213 0.86616 0.86251 0.85493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -19.01 11.97 55.50 0.66 -18.34 15 2 C 0.04 1.04 5.50 -17.50 -0.10 0.95 15 3 Si 0.95 16.80 29.55 -169.99 -5.02 11.78 15 4 H -0.26 -4.62 7.11 56.52 0.40 -4.22 15 5 H -0.27 -4.71 7.11 56.52 0.40 -4.31 15 6 H -0.26 -4.27 7.11 56.52 0.40 -3.87 15 7 C -0.29 -7.18 9.11 -14.79 -0.13 -7.32 15 8 H 0.14 2.91 5.67 -52.48 -0.30 2.61 15 9 N -0.15 -4.02 3.80 -9.29 -0.04 -4.06 15 10 N -0.12 -3.49 11.93 60.35 0.72 -2.77 15 11 N -0.14 -4.10 13.35 60.35 0.81 -3.30 15 12 N -0.34 -9.17 12.15 32.55 0.40 -8.78 15 13 C 0.09 2.22 7.66 -153.90 -1.18 1.04 15 14 C 0.03 0.71 5.81 -104.96 -0.61 0.10 15 15 C -0.12 -2.13 8.56 -39.17 -0.34 -2.46 15 16 C -0.12 -1.77 10.03 -39.64 -0.40 -2.16 15 17 C -0.13 -1.82 10.04 -39.48 -0.40 -2.22 15 18 C -0.12 -1.79 10.03 -39.64 -0.40 -2.19 15 19 C -0.10 -1.74 9.75 -39.17 -0.38 -2.12 15 20 H 0.29 6.61 8.30 -40.82 -0.34 6.27 15 21 H 0.13 2.51 5.98 -52.49 -0.31 2.20 15 22 H 0.12 1.43 8.06 -52.49 -0.42 1.00 15 23 H 0.12 1.22 8.06 -52.49 -0.42 0.79 15 24 H 0.12 1.38 8.06 -52.48 -0.42 0.96 15 25 H 0.13 2.29 8.06 -52.49 -0.42 1.86 15 LS Contribution 232.75 15.07 3.51 3.51 Total: -1.00 -30.70 232.75 -4.33 -35.03 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: -1.44 Total: 3.30 kcal Atomic # 6 Polarization: -12.45 SS G_CDS: -3.93 Total: -16.38 kcal Atomic # 7 Polarization: -39.79 SS G_CDS: 2.55 Total: -37.24 kcal Atomic # 14 Polarization: 16.80 SS G_CDS: -5.02 Total: 11.78 kcal Total LS contribution 3.51 Total: 3.51 kcal Total: -30.70 -4.33 -35.03 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075576835.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.007 kcal (2) G-P(sol) polarization free energy of solvation -30.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds