Wall clock time and date at job start Mon Mar 30 2020 02:23:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30703 * 1 3 3 Si 1.86804 * 119.99478 * 2 1 4 4 H 1.48498 * 109.47065 * 85.17334 * 3 2 1 5 5 H 1.48503 * 109.46665 * 205.16887 * 3 2 1 6 6 H 1.48497 * 109.47062 * 325.16515 * 3 2 1 7 7 C 1.40354 * 120.00296 * 180.27778 * 2 1 3 8 8 H 1.08004 * 120.00037 * 187.06656 * 7 2 1 9 9 C 1.39164 * 120.00014 * 7.06893 * 7 2 1 10 10 O 1.35487 * 126.99234 * 351.94383 * 9 7 2 11 11 C 1.34066 * 107.97124 * 179.89612 * 10 9 7 12 12 N 1.30422 * 110.13796 * 0.37872 * 11 10 9 13 13 C 1.34395 * 109.20328 * 359.76682 * 12 11 10 14 14 C 1.47534 * 126.66598 * 180.02562 * 13 12 11 15 15 C 1.40271 * 120.58227 * 324.96715 * 14 13 12 16 16 C 1.38264 * 118.27033 * 179.97438 * 15 14 13 17 17 C 1.38432 * 119.33089 * 0.02562 * 16 15 14 18 18 N 1.31959 * 121.14285 * 0.02562 * 17 16 15 19 19 C 1.31650 * 121.89626 * 359.68002 * 18 17 16 20 20 H 0.96999 * 120.00676 * 359.97438 * 1 2 3 21 21 H 1.07997 * 124.92970 * 180.11689 * 11 10 9 22 22 H 1.07998 * 120.86598 * 359.96104 * 15 14 13 23 23 H 1.07999 * 120.33305 * 180.02562 * 16 15 14 24 24 H 1.08006 * 119.43099 * 180.02562 * 17 16 15 25 25 H 1.08004 * 119.73892 * 180.30930 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3070 0.0000 0.0000 3 14 2.2409 1.6179 0.0000 4 1 2.3863 2.1054 1.3951 5 1 3.5858 1.4130 -0.5955 6 1 1.4931 2.6210 -0.7997 7 6 2.0089 -1.2155 -0.0059 8 1 3.0827 -1.2195 0.1092 9 6 1.3210 -2.4154 -0.1600 10 8 -0.0225 -2.5903 -0.1632 11 6 -0.2692 -3.8960 -0.3410 12 7 0.8517 -4.5551 -0.4423 13 6 1.8803 -3.6963 -0.3385 14 6 3.3161 -4.0299 -0.4001 15 6 3.7916 -5.2380 0.1311 16 6 5.1461 -5.5022 0.0471 17 6 5.9819 -4.5756 -0.5521 18 7 5.5080 -3.4460 -1.0430 19 6 4.2263 -3.1495 -0.9932 20 1 -0.4851 0.8400 0.0004 21 1 -1.2532 -4.3385 -0.3889 22 1 3.1172 -5.9432 0.5940 23 1 5.5480 -6.4224 0.4448 24 1 7.0402 -4.7805 -0.6191 25 1 3.8755 -2.2171 -1.4104 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075600725.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:53 Heat of formation + Delta-G solvation = 29.906902 kcal Electronic energy + Delta-G solvation = -13564.665214 eV Core-core repulsion = 11122.835828 eV Total energy + Delta-G solvation = -2441.829386 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.064 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.06553 -39.00422 -34.19950 -33.37258 -31.47809 -30.93649 -28.85900 -25.46813 -22.86106 -22.70699 -20.85067 -19.74396 -17.74586 -16.36358 -16.00932 -15.31900 -15.14762 -14.57273 -14.06433 -13.45894 -13.15941 -12.70637 -12.42470 -12.27250 -11.65834 -11.55242 -11.30132 -10.72152 -10.51026 -9.99414 -9.78092 -9.09733 -9.01691 -8.76580 -8.41303 -7.41778 -7.24896 -4.78744 1.79738 2.04002 2.70210 2.88044 2.94680 3.30270 3.63071 4.02865 4.58924 4.68760 4.94314 5.18024 5.51816 5.56505 5.77729 5.87725 6.04838 6.44255 6.58802 6.64712 6.74193 6.88479 7.18449 7.38537 7.48392 7.85036 8.02167 8.21834 8.26216 8.74162 9.44436 9.71929 Molecular weight = 216.06amu Principal moments of inertia in cm(-1) A = 0.027271 B = 0.011698 C = 0.008390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.489102 B = 2393.078976 C = 3336.321509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.751 5.751 2 C 0.065 3.935 3 Si 0.926 3.074 4 H -0.263 1.263 5 H -0.251 1.251 6 H -0.270 1.270 7 C -0.414 4.414 8 H 0.116 0.884 9 C 0.204 3.796 10 O -0.199 6.199 11 C 0.032 3.968 12 N -0.451 5.451 13 C -0.199 4.199 14 C 0.031 3.969 15 C -0.096 4.096 16 C -0.168 4.168 17 C 0.044 3.956 18 N -0.482 5.482 19 C 0.076 3.924 20 H 0.292 0.708 21 H 0.212 0.788 22 H 0.125 0.875 23 H 0.121 0.879 24 H 0.141 0.859 25 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.649 -1.060 0.544 3.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.375 5.375 2 C -0.160 4.160 3 Si 0.748 3.252 4 H -0.188 1.188 5 H -0.174 1.174 6 H -0.194 1.194 7 C -0.441 4.441 8 H 0.134 0.866 9 C 0.148 3.852 10 O -0.088 6.088 11 C -0.192 4.192 12 N -0.179 5.179 13 C -0.320 4.320 14 C 0.029 3.971 15 C -0.122 4.122 16 C -0.188 4.188 17 C -0.112 4.112 18 N -0.190 5.190 19 C -0.082 4.082 20 H 0.103 0.897 21 H 0.228 0.772 22 H 0.143 0.857 23 H 0.139 0.861 24 H 0.158 0.842 25 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 3.976 -1.013 0.075 4.104 hybrid contribution -0.632 0.629 0.572 1.060 sum 3.344 -0.384 0.647 3.427 Atomic orbital electron populations 1.69723 1.07898 1.30853 1.29005 1.26337 0.95134 1.02582 0.91913 0.85955 0.80773 0.78736 0.79752 1.18791 1.17376 1.19440 1.18969 0.95848 0.87381 1.41931 0.86623 1.20421 0.79300 0.94130 0.91323 1.84812 1.24236 1.27098 1.72668 1.26561 0.98368 0.79433 1.14855 1.69496 0.98293 1.35375 1.14719 1.19440 0.90921 0.89482 1.32168 1.18691 0.91156 0.93526 0.93765 1.21598 0.94697 0.97318 0.98571 1.21872 0.94436 1.00525 1.02005 1.22414 0.99485 0.90728 0.98612 1.67511 1.15907 1.18796 1.16794 1.23032 0.87662 1.00235 0.97308 0.89665 0.77208 0.85705 0.86103 0.84189 0.82365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -18.27 12.09 55.57 0.67 -17.60 15 2 C 0.07 1.52 5.49 -17.24 -0.09 1.43 15 3 Si 0.93 17.09 29.57 -169.99 -5.03 12.06 15 4 H -0.26 -4.78 7.11 56.52 0.40 -4.38 15 5 H -0.25 -4.58 7.11 56.52 0.40 -4.18 15 6 H -0.27 -4.84 7.11 56.52 0.40 -4.44 15 7 C -0.41 -10.26 8.22 -38.44 -0.32 -10.58 15 8 H 0.12 2.72 6.10 -52.48 -0.32 2.40 15 9 C 0.20 5.39 6.82 -38.23 -0.26 5.13 15 10 O -0.20 -5.27 9.19 2.95 0.03 -5.24 15 11 C 0.03 0.75 13.14 52.16 0.69 1.44 15 12 N -0.45 -11.31 11.25 -10.56 -0.12 -11.43 15 13 C -0.20 -5.08 6.78 -81.95 -0.56 -5.64 15 14 C 0.03 0.72 5.82 -104.75 -0.61 0.11 15 15 C -0.10 -1.94 9.94 -38.81 -0.39 -2.33 15 16 C -0.17 -2.89 10.10 -39.50 -0.40 -3.29 15 17 C 0.04 0.78 11.17 -17.43 -0.19 0.58 15 18 N -0.48 -9.85 10.34 -12.81 -0.13 -9.98 15 19 C 0.08 1.67 9.73 -17.03 -0.17 1.50 15 20 H 0.29 6.30 8.29 -40.82 -0.34 5.96 15 21 H 0.21 3.89 8.06 -52.49 -0.42 3.46 15 22 H 0.12 2.46 8.06 -52.49 -0.42 2.04 15 23 H 0.12 1.63 8.06 -52.49 -0.42 1.21 15 24 H 0.14 1.96 8.06 -52.48 -0.42 1.53 15 25 H 0.16 3.46 6.50 -52.48 -0.34 3.12 15 LS Contribution 234.10 15.07 3.53 3.53 Total: -1.00 -28.74 234.10 -4.83 -33.57 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -1.49 Total: 6.73 kcal Atomic # 6 Polarization: -9.34 SS G_CDS: -2.30 Total: -11.64 kcal Atomic # 7 Polarization: -39.43 SS G_CDS: 0.42 Total: -39.01 kcal Atomic # 8 Polarization: -5.27 SS G_CDS: 0.03 Total: -5.24 kcal Atomic # 14 Polarization: 17.09 SS G_CDS: -5.03 Total: 12.06 kcal Total LS contribution 3.53 Total: 3.53 kcal Total: -28.74 -4.83 -33.57 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075600725.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.478 kcal (2) G-P(sol) polarization free energy of solvation -28.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds