Wall clock time and date at job start Mon Mar 30 2020 02:25:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30642 * 1 3 3 Si 1.86805 * 119.99828 * 2 1 4 4 H 1.48502 * 109.46659 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47026 * 299.99848 * 3 2 1 6 6 H 1.48501 * 109.47052 * 60.00268 * 3 2 1 7 7 C 1.40426 * 120.00087 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99951 * 179.97438 * 7 2 1 9 9 C 1.39146 * 120.00230 * 359.97438 * 7 2 1 10 10 O 1.35460 * 126.98960 * 0.02817 * 9 7 2 11 11 C 1.34050 * 107.97972 * 179.97438 * 10 9 7 12 12 N 1.30420 * 110.14192 * 359.74490 * 11 10 9 13 13 C 1.34399 * 109.19782 * 0.41240 * 12 11 10 14 14 C 1.47498 * 126.67187 * 179.86189 * 13 12 11 15 15 C 1.39834 * 119.76590 * 334.69014 * 14 13 12 16 16 C 1.38275 * 119.03632 * 180.02562 * 15 14 13 17 17 C 1.38887 * 118.54733 * 359.97438 * 16 15 14 18 18 C 1.38401 * 119.43454 * 0.26392 * 17 16 15 19 19 N 1.31646 * 120.93853 * 359.48925 * 18 17 16 20 20 H 0.97002 * 120.00395 * 359.97438 * 1 2 3 21 21 H 1.08003 * 124.93078 * 179.97438 * 11 10 9 22 22 H 1.08004 * 120.47969 * 0.02562 * 15 14 13 23 23 H 1.08008 * 120.72749 * 180.02562 * 16 15 14 24 24 H 1.08002 * 120.27918 * 179.97438 * 17 16 15 25 25 H 1.08003 * 119.52978 * 179.74280 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6178 0.0000 4 1 3.7004 1.3464 -0.0006 5 1 1.8816 2.3965 -1.2125 6 1 1.8817 2.3965 1.2125 7 6 2.0086 -1.2161 0.0005 8 1 3.0886 -1.2161 0.0001 9 6 1.3129 -2.4212 0.0016 10 8 -0.0316 -2.5861 0.0017 11 6 -0.2871 -3.9020 0.0023 12 7 0.8293 -4.5763 -0.0028 13 6 1.8638 -3.7183 0.0021 14 6 3.2971 -4.0665 0.0017 15 6 3.7121 -5.2991 0.5153 16 6 5.0595 -5.6098 0.5080 17 6 5.9519 -4.6814 -0.0121 18 6 5.4738 -3.4777 -0.5000 19 7 4.1858 -3.2058 -0.4869 20 1 -0.4851 0.8400 0.0004 21 1 -1.2742 -4.3404 0.0030 22 1 2.9908 -5.9983 0.9119 23 1 5.4102 -6.5543 0.8974 24 1 7.0104 -4.8949 -0.0312 25 1 6.1669 -2.7528 -0.9009 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075600727.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:28 Heat of formation + Delta-G solvation = 34.518449 kcal Electronic energy + Delta-G solvation = -13564.915932 eV Core-core repulsion = 11123.286517 eV Total energy + Delta-G solvation = -2441.629414 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.064 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.95303 -38.91349 -34.11265 -33.08021 -31.67615 -30.54971 -28.98237 -25.40870 -22.80018 -22.66532 -20.74961 -19.76480 -17.60307 -16.42229 -15.61609 -15.09673 -15.04779 -14.52804 -14.22551 -13.42727 -13.06521 -12.61042 -12.56827 -12.15180 -11.51176 -11.35840 -11.04802 -10.72932 -10.45208 -9.91217 -9.72068 -9.11991 -9.02113 -8.45057 -8.36026 -7.34265 -7.17693 -4.66842 1.83115 2.10137 2.74485 2.92583 3.01691 3.38402 3.70288 4.04454 4.72183 4.76445 5.03339 5.24698 5.44716 5.59194 5.76458 5.97887 6.16270 6.46344 6.67781 6.69869 6.77494 6.93318 7.14563 7.47851 7.53750 8.03730 8.17182 8.36465 8.39985 8.96320 9.55219 9.79238 Molecular weight = 216.06amu Principal moments of inertia in cm(-1) A = 0.027758 B = 0.011700 C = 0.008367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.490317 B = 2392.688906 C = 3345.630053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.750 5.750 2 C 0.059 3.941 3 Si 0.930 3.070 4 H -0.251 1.251 5 H -0.267 1.267 6 H -0.269 1.269 7 C -0.383 4.383 8 H 0.131 0.869 9 C 0.212 3.788 10 O -0.205 6.205 11 C 0.036 3.964 12 N -0.450 5.450 13 C -0.199 4.199 14 C 0.278 3.722 15 C -0.186 4.186 16 C -0.075 4.075 17 C -0.233 4.233 18 C 0.108 3.892 19 N -0.493 5.493 20 H 0.291 0.709 21 H 0.212 0.788 22 H 0.126 0.874 23 H 0.119 0.881 24 H 0.117 0.883 25 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.250 -1.093 0.702 5.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.374 5.374 2 C -0.166 4.166 3 Si 0.753 3.247 4 H -0.174 1.174 5 H -0.192 1.192 6 H -0.193 1.193 7 C -0.411 4.411 8 H 0.148 0.852 9 C 0.156 3.844 10 O -0.094 6.094 11 C -0.189 4.189 12 N -0.178 5.178 13 C -0.320 4.320 14 C 0.145 3.855 15 C -0.207 4.207 16 C -0.101 4.101 17 C -0.253 4.253 18 C -0.051 4.051 19 N -0.203 5.203 20 H 0.102 0.898 21 H 0.228 0.772 22 H 0.144 0.856 23 H 0.137 0.863 24 H 0.136 0.864 25 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 4.721 -0.857 0.365 4.812 hybrid contribution 0.377 0.435 0.327 0.662 sum 5.098 -0.422 0.693 5.162 Atomic orbital electron populations 1.69725 1.08000 1.30695 1.28997 1.26502 0.95136 1.02914 0.92048 0.85861 0.81153 0.78800 0.78931 1.17393 1.19222 1.19344 1.19373 0.96336 0.86583 1.38815 0.85182 1.20451 0.78913 0.94597 0.90478 1.84811 1.24196 1.26182 1.74253 1.26539 0.98276 0.78868 1.15204 1.69414 0.98214 1.35810 1.14354 1.19105 0.89988 0.88807 1.34144 1.18469 0.90189 0.88194 0.88683 1.21970 0.95674 0.98999 1.04026 1.21289 0.93305 0.98484 0.96982 1.21814 0.99799 0.96910 1.06810 1.22570 0.92183 0.94819 0.95563 1.67817 1.01905 1.33856 1.16760 0.89816 0.77182 0.85583 0.86316 0.86445 0.83977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -18.85 12.05 55.58 0.67 -18.19 15 2 C 0.06 1.43 5.50 -17.23 -0.09 1.34 15 3 Si 0.93 17.84 29.56 -169.99 -5.03 12.81 15 4 H -0.25 -4.77 7.11 56.52 0.40 -4.37 15 5 H -0.27 -4.99 7.11 56.52 0.40 -4.58 15 6 H -0.27 -4.99 7.11 56.52 0.40 -4.59 15 7 C -0.38 -10.17 8.93 -38.42 -0.34 -10.52 15 8 H 0.13 3.38 6.30 -52.49 -0.33 3.05 15 9 C 0.21 5.93 6.85 -38.23 -0.26 5.67 15 10 O -0.20 -5.62 9.15 3.07 0.03 -5.59 15 11 C 0.04 0.88 13.14 52.16 0.69 1.57 15 12 N -0.45 -11.62 11.17 -10.57 -0.12 -11.74 15 13 C -0.20 -5.38 6.92 -81.95 -0.57 -5.95 15 14 C 0.28 6.80 6.67 -82.98 -0.55 6.25 15 15 C -0.19 -3.92 9.77 -38.97 -0.38 -4.30 15 16 C -0.08 -1.31 10.16 -39.33 -0.40 -1.71 15 17 C -0.23 -3.86 10.11 -39.28 -0.40 -4.26 15 18 C 0.11 2.02 11.18 -17.57 -0.20 1.82 15 19 N -0.49 -11.46 8.41 -9.82 -0.08 -11.54 15 20 H 0.29 6.44 8.29 -40.82 -0.34 6.10 15 21 H 0.21 3.98 8.06 -52.48 -0.42 3.55 15 22 H 0.13 2.60 8.05 -52.48 -0.42 2.18 15 23 H 0.12 1.65 8.06 -52.48 -0.42 1.23 15 24 H 0.12 1.53 8.06 -52.49 -0.42 1.11 15 25 H 0.14 2.17 8.06 -52.48 -0.42 1.75 15 LS Contribution 235.78 15.07 3.55 3.55 Total: -1.00 -30.30 235.78 -5.06 -35.36 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -1.58 Total: 5.43 kcal Atomic # 6 Polarization: -7.59 SS G_CDS: -2.51 Total: -10.10 kcal Atomic # 7 Polarization: -41.93 SS G_CDS: 0.47 Total: -41.47 kcal Atomic # 8 Polarization: -5.62 SS G_CDS: 0.03 Total: -5.59 kcal Atomic # 14 Polarization: 17.84 SS G_CDS: -5.03 Total: 12.81 kcal Total LS contribution 3.55 Total: 3.55 kcal Total: -30.30 -5.06 -35.36 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075600727.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.880 kcal (2) G-P(sol) polarization free energy of solvation -30.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.361 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds