Wall clock time and date at job start Mon Mar 30 2020 02:38:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50703 * 109.47247 * 2 1 4 4 C 1.39020 * 126.69983 * 90.03038 * 3 2 1 5 5 C 1.39721 * 125.53602 * 359.97024 * 4 3 2 6 6 H 1.07998 * 120.00243 * 354.09846 * 5 4 3 7 7 C 1.40275 * 119.99845 * 174.09374 * 5 4 3 8 8 N 1.30705 * 119.99916 * 6.03979 * 7 5 4 9 9 Si 1.86797 * 119.99948 * 186.03721 * 7 5 4 10 10 H 1.48507 * 109.46916 * 94.98629 * 9 7 5 11 11 H 1.48503 * 109.47064 * 214.98071 * 9 7 5 12 12 H 1.48497 * 109.47422 * 334.98501 * 9 7 5 13 13 O 1.35134 * 108.92548 * 179.97438 * 4 3 2 14 14 C 1.35040 * 109.92144 * 359.97438 * 13 4 3 15 15 C 1.38730 * 132.79182 * 179.97438 * 14 13 4 16 16 C 1.38082 * 119.93486 * 180.02562 * 15 14 13 17 17 C 1.38851 * 120.73403 * 0.02562 * 16 15 14 18 18 C 1.36550 * 120.47585 * 359.97438 * 17 16 15 19 19 C 1.40270 * 119.74238 * 359.70780 * 18 17 16 20 20 H 1.09000 * 109.46988 * 59.99452 * 1 2 3 21 21 H 1.08997 * 109.47872 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.47078 * 300.00111 * 1 2 3 23 23 H 1.09004 * 109.47078 * 239.99888 * 2 1 3 24 24 H 1.09000 * 109.47447 * 120.00277 * 2 1 3 25 25 H 0.97005 * 120.00202 * 179.97438 * 8 7 5 26 26 H 1.07998 * 120.03171 * 0.02562 * 15 14 13 27 27 H 1.07992 * 119.62925 * 179.97438 * 16 15 14 28 28 H 1.07996 * 119.76494 * 179.97438 * 17 16 15 29 29 H 1.08005 * 120.13241 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3099 2.2039 1.1146 5 6 2.1679 1.8020 2.4452 6 1 1.7266 0.8436 2.6757 7 6 2.5986 2.6433 3.4818 8 7 3.0231 3.8494 3.2109 9 14 2.5654 2.0398 5.2493 10 1 3.8994 1.4978 5.6124 11 1 2.2278 3.1698 6.1518 12 1 1.5426 0.9723 5.3888 13 8 2.7392 3.4170 0.7021 14 6 2.7562 3.4647 -0.6473 15 6 3.1071 4.4571 -1.5510 16 6 3.0213 4.2153 -2.9077 17 6 2.5858 2.9855 -3.3832 18 6 2.2346 1.9921 -2.5146 19 6 2.3204 2.2139 -1.1322 20 1 -0.3633 0.5139 -0.8899 21 1 -0.3635 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 1.8933 -0.5139 -0.8900 24 1 1.8934 -0.5139 0.8899 25 1 3.3206 4.4313 3.9277 26 1 3.4469 5.4179 -1.1936 27 1 3.2953 4.9915 -3.6068 28 1 2.5243 2.8135 -4.4476 29 1 1.8969 1.0376 -2.8905 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000077067979.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:46 Heat of formation + Delta-G solvation = -9.085534 kcal Electronic energy + Delta-G solvation = -13994.635171 eV Core-core repulsion = 11654.655289 eV Total energy + Delta-G solvation = -2339.979881 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.089 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.71135 -36.54165 -34.07616 -33.44625 -29.96201 -29.10191 -28.73119 -25.39648 -22.52492 -21.62009 -21.01669 -18.55022 -17.81958 -15.74193 -15.36344 -15.17453 -14.42638 -14.11599 -13.40055 -13.10415 -12.79584 -12.47859 -12.07257 -11.58241 -11.47206 -11.29139 -11.22984 -11.05625 -10.77132 -10.48318 -10.22651 -9.89391 -9.68228 -9.49861 -8.62458 -7.48272 -7.12987 -7.01192 -4.61440 2.17702 2.60644 2.84432 2.90579 2.95862 3.67245 3.70445 4.51923 4.86568 5.02332 5.78399 5.83900 5.99267 6.06072 6.16123 6.40880 6.43172 6.48540 6.64962 6.66051 6.74945 6.82862 7.10757 7.15149 7.21306 7.23447 7.49406 7.65660 7.73496 7.82278 8.02038 8.34809 8.46336 8.99831 9.84067 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.033804 B = 0.010429 C = 0.008174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.097101 B = 2684.167317 C = 3424.710764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.008 4.008 3 C -0.389 4.389 4 C 0.247 3.753 5 C -0.422 4.422 6 H 0.112 0.888 7 C 0.065 3.935 8 N -0.757 5.757 9 Si 0.927 3.073 10 H -0.264 1.264 11 H -0.272 1.272 12 H -0.255 1.255 13 O -0.171 6.171 14 C -0.024 4.024 15 C -0.087 4.087 16 C -0.184 4.184 17 C -0.125 4.125 18 C -0.148 4.148 19 C -0.036 4.036 20 H 0.043 0.957 21 H 0.035 0.965 22 H 0.051 0.949 23 H 0.041 0.959 24 H 0.051 0.949 25 H 0.290 0.710 26 H 0.108 0.892 27 H 0.108 0.892 28 H 0.103 0.897 29 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.018 -2.085 -1.619 2.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.046 4.046 3 C -0.391 4.391 4 C 0.196 3.804 5 C -0.450 4.450 6 H 0.130 0.870 7 C -0.159 4.159 8 N -0.380 5.380 9 Si 0.750 3.250 10 H -0.189 1.189 11 H -0.197 1.197 12 H -0.179 1.179 13 O -0.072 6.072 14 C -0.071 4.071 15 C -0.106 4.106 16 C -0.202 4.202 17 C -0.143 4.143 18 C -0.166 4.166 19 C -0.037 4.037 20 H 0.063 0.937 21 H 0.054 0.946 22 H 0.070 0.930 23 H 0.060 0.940 24 H 0.070 0.930 25 H 0.101 0.899 26 H 0.126 0.874 27 H 0.126 0.874 28 H 0.121 0.879 29 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -0.852 -1.627 -1.373 2.293 hybrid contribution 0.033 -0.108 0.635 0.645 sum -0.819 -1.735 -0.738 2.056 Atomic orbital electron populations 1.21781 0.97705 0.98998 1.01439 1.19206 0.93439 0.92453 0.99453 1.19525 1.30328 0.99038 0.90249 1.19390 0.87501 0.80061 0.93408 1.19035 1.35033 1.03948 0.86955 0.87007 1.26316 0.92535 0.94044 1.03039 1.69740 1.26053 1.05918 1.36301 0.85960 0.80087 0.79685 0.79278 1.18891 1.19695 1.17889 1.84628 1.71716 1.33415 1.17407 1.19747 1.07450 0.96633 0.83293 1.19645 1.02860 0.96849 0.91269 1.20315 1.08674 0.97697 0.93519 1.20328 1.01972 0.94012 0.97975 1.20025 1.06342 0.98825 0.91435 1.18647 0.97900 0.93654 0.93471 0.93746 0.94634 0.92996 0.94039 0.93047 0.89879 0.87361 0.87356 0.87903 0.87956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.68 9.89 37.16 0.37 -2.31 15 2 C -0.01 -0.17 6.18 -27.88 -0.17 -0.34 15 3 C -0.39 -9.78 5.55 -103.20 -0.57 -10.35 15 4 C 0.25 6.69 6.74 -38.74 -0.26 6.43 15 5 C -0.42 -10.68 9.00 -38.26 -0.34 -11.03 15 6 H 0.11 2.62 7.29 -52.49 -0.38 2.23 15 7 C 0.06 1.55 5.49 -17.27 -0.09 1.45 15 8 N -0.76 -19.20 11.98 55.57 0.67 -18.53 15 9 Si 0.93 17.36 29.57 -169.99 -5.03 12.33 15 10 H -0.26 -4.88 7.11 56.52 0.40 -4.48 15 11 H -0.27 -4.98 7.11 56.52 0.40 -4.58 15 12 H -0.26 -4.64 7.11 56.52 0.40 -4.24 15 13 O -0.17 -4.83 8.92 1.30 0.01 -4.81 15 14 C -0.02 -0.63 7.37 -38.34 -0.28 -0.91 15 15 C -0.09 -1.96 10.06 -39.46 -0.40 -2.36 15 16 C -0.18 -3.65 10.02 -39.41 -0.40 -4.05 15 17 C -0.12 -2.46 9.97 -39.96 -0.40 -2.86 15 18 C -0.15 -3.23 10.08 -39.43 -0.40 -3.63 15 19 C -0.04 -0.89 6.13 -106.94 -0.66 -1.55 15 20 H 0.04 0.84 8.14 -51.93 -0.42 0.42 15 21 H 0.03 0.56 8.14 -51.93 -0.42 0.14 15 22 H 0.05 1.02 8.14 -51.93 -0.42 0.59 15 23 H 0.04 0.82 8.14 -51.93 -0.42 0.40 15 24 H 0.05 1.05 7.55 -51.93 -0.39 0.66 15 25 H 0.29 6.55 8.29 -40.82 -0.34 6.21 15 26 H 0.11 2.21 8.06 -52.49 -0.42 1.79 15 27 H 0.11 1.79 8.06 -52.49 -0.42 1.37 15 28 H 0.10 1.68 8.06 -52.49 -0.42 1.26 15 29 H 0.10 2.03 8.06 -52.48 -0.42 1.60 15 LS Contribution 256.24 15.07 3.86 3.86 Total: -1.00 -27.90 256.24 -7.38 -35.29 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: -3.29 Total: 3.37 kcal Atomic # 6 Polarization: -27.90 SS G_CDS: -3.61 Total: -31.51 kcal Atomic # 7 Polarization: -19.20 SS G_CDS: 0.67 Total: -18.53 kcal Atomic # 8 Polarization: -4.83 SS G_CDS: 0.01 Total: -4.81 kcal Atomic # 14 Polarization: 17.36 SS G_CDS: -5.03 Total: 12.33 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -27.90 -7.38 -35.29 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077067979.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.200 kcal (2) G-P(sol) polarization free energy of solvation -27.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds