Wall clock time and date at job start Mon Mar 30 2020 02:59:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31439 * 1 3 3 Si 1.86799 * 120.00387 * 2 1 4 4 H 1.48497 * 109.46841 * 275.40150 * 3 2 1 5 5 H 1.48502 * 109.47034 * 35.40038 * 3 2 1 6 6 H 1.48496 * 109.47077 * 155.40230 * 3 2 1 7 7 C 1.38857 * 119.99512 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00222 * 336.32998 * 7 2 1 9 9 N 1.37204 * 119.99727 * 156.33646 * 7 2 1 10 10 C 1.37006 * 125.09066 * 139.70806 * 9 7 2 11 11 C 1.50692 * 125.03706 * 359.97285 * 10 9 7 12 12 N 1.46900 * 109.47538 * 275.00391 * 11 10 9 13 13 C 1.34306 * 109.93308 * 180.24254 * 10 9 7 14 14 C 1.46675 * 107.04569 * 359.59056 * 13 10 9 15 15 C 1.39516 * 133.96503 * 180.11144 * 14 13 10 16 16 C 1.37772 * 119.64976 * 180.35610 * 15 14 13 17 17 C 1.38748 * 120.37245 * 359.96171 * 16 15 14 18 18 C 1.37898 * 120.64260 * 0.02562 * 17 16 15 19 19 C 1.38108 * 125.09244 * 319.67452 * 9 7 2 20 20 H 0.96999 * 119.99699 * 0.02562 * 1 2 3 21 21 H 1.09008 * 109.46942 * 35.00249 * 11 10 9 22 22 H 1.08997 * 109.47741 * 155.00139 * 11 10 9 23 23 H 1.00906 * 111.00346 * 179.97438 * 12 11 10 24 24 H 1.00897 * 110.99561 * 303.95319 * 12 11 10 25 25 H 1.07995 * 126.47534 * 179.73978 * 13 10 9 26 26 H 1.07998 * 120.17125 * 0.31828 * 15 14 13 27 27 H 1.08007 * 119.81563 * 179.97438 * 16 15 14 28 28 H 1.07997 * 119.67975 * 180.02562 * 17 16 15 29 29 H 1.08006 * 120.04043 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2485 1.6177 0.0000 4 1 2.3819 2.1122 -1.3939 5 1 1.5077 2.6170 0.8111 6 1 3.5984 1.4097 0.5828 7 6 2.0086 -1.2026 0.0005 8 1 1.5367 -2.0984 0.3764 9 7 3.2941 -1.2528 -0.4764 10 6 4.3151 -1.9729 0.0858 11 6 4.1932 -2.8276 1.3209 12 7 4.3706 -1.9907 2.5151 13 6 5.4423 -1.7996 -0.6236 14 6 5.1159 -0.9024 -1.7371 15 6 5.8499 -0.3642 -2.7945 16 6 5.2325 0.4767 -3.6944 17 6 3.8879 0.7889 -3.5542 18 6 3.1493 0.2645 -2.5144 19 6 3.7525 -0.5856 -1.5953 20 1 -0.4850 0.8401 -0.0004 21 1 3.2072 -3.2917 1.3457 22 1 4.9593 -3.6028 1.3035 23 1 4.2928 -2.5411 3.3572 24 1 5.2509 -1.4987 2.4843 25 1 6.4062 -2.2398 -0.4151 26 1 6.8967 -0.6051 -2.9066 27 1 5.7983 0.8951 -4.5137 28 1 3.4151 1.4489 -4.2663 29 1 2.1033 0.5144 -2.4143 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082635709.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:52 Heat of formation + Delta-G solvation = 63.790728 kcal Electronic energy + Delta-G solvation = -14291.841833 eV Core-core repulsion = 11987.314854 eV Total energy + Delta-G solvation = -2304.526978 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.096 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.36944 -36.36308 -34.00306 -33.08207 -31.00070 -29.04342 -28.12924 -24.83137 -24.09831 -21.14556 -20.63610 -18.91818 -17.86519 -16.09888 -15.50572 -15.08765 -14.37619 -14.22076 -13.91245 -13.31387 -13.04190 -12.82411 -12.54588 -12.44682 -11.85398 -11.42310 -11.00614 -10.82161 -10.61010 -10.32455 -10.12322 -9.69031 -9.20163 -8.44625 -8.21755 -7.19068 -6.78146 -6.72139 -4.30643 2.00329 2.57913 3.12516 3.25488 3.39915 3.66319 4.09556 4.36300 4.69854 4.94111 5.23758 5.51991 5.75345 5.80308 5.83079 5.97445 6.19343 6.27574 6.40355 6.52995 6.85262 6.86558 6.98737 7.36170 7.39923 7.45257 7.54179 7.79456 7.85745 7.92188 7.98803 8.40720 8.95078 9.29411 10.35086 Molecular weight = 216.10amu Principal moments of inertia in cm(-1) A = 0.021500 B = 0.018486 C = 0.011474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.986047 B = 1514.284636 C = 2439.608756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.839 5.839 2 C 0.084 3.916 3 Si 0.868 3.132 4 H -0.250 1.250 5 H -0.286 1.286 6 H -0.257 1.257 7 C -0.347 4.347 8 H 0.113 0.887 9 N -0.286 5.286 10 C 0.061 3.939 11 C 0.138 3.862 12 N -0.837 5.837 13 C -0.248 4.248 14 C -0.121 4.121 15 C -0.085 4.085 16 C -0.166 4.166 17 C -0.135 4.135 18 C -0.106 4.106 19 C 0.063 3.937 20 H 0.281 0.719 21 H 0.080 0.920 22 H 0.036 0.964 23 H 0.335 0.665 24 H 0.339 0.661 25 H 0.126 0.874 26 H 0.106 0.894 27 H 0.107 0.893 28 H 0.109 0.891 29 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.907 -1.099 -0.559 8.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C -0.128 4.128 3 Si 0.693 3.307 4 H -0.175 1.175 5 H -0.213 1.213 6 H -0.180 1.180 7 C -0.474 4.474 8 H 0.131 0.869 9 N 0.050 4.950 10 C -0.054 4.054 11 C 0.008 3.992 12 N -0.367 5.367 13 C -0.274 4.274 14 C -0.127 4.127 15 C -0.104 4.104 16 C -0.185 4.185 17 C -0.155 4.155 18 C -0.125 4.125 19 C -0.048 4.048 20 H 0.092 0.908 21 H 0.098 0.902 22 H 0.054 0.946 23 H 0.148 0.852 24 H 0.151 0.849 25 H 0.144 0.856 26 H 0.124 0.876 27 H 0.125 0.875 28 H 0.127 0.873 29 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 6.651 -0.636 -0.635 6.711 hybrid contribution 0.988 0.266 0.315 1.070 sum 7.638 -0.370 -0.319 7.654 Atomic orbital electron populations 1.69796 1.06559 1.29154 1.41409 1.25318 0.95097 0.99178 0.93199 0.87057 0.81365 0.82336 0.79933 1.17468 1.21283 1.18016 1.19092 0.85488 0.97965 1.44832 0.86945 1.40153 1.07500 1.31689 1.15691 1.20134 0.87576 1.01432 0.96248 1.20065 1.01000 0.91745 0.86413 1.58510 1.41603 1.33295 1.03325 1.21001 0.97067 1.09119 1.00208 1.18971 0.93279 1.02348 0.98075 1.20247 0.98080 0.97896 0.94185 1.20553 0.95018 1.02421 1.00516 1.20506 0.94402 1.02205 0.98391 1.20170 0.99797 0.97999 0.94580 1.18321 0.93926 1.01376 0.91167 0.90832 0.90178 0.94645 0.85231 0.84905 0.85636 0.87551 0.87507 0.87259 0.86568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.41 13.96 55.49 0.77 -22.63 15 2 C 0.08 2.30 4.75 -17.49 -0.08 2.21 15 3 Si 0.87 21.78 24.51 -169.99 -4.17 17.61 15 4 H -0.25 -6.01 5.54 56.52 0.31 -5.69 15 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 15 6 H -0.26 -6.84 7.11 56.52 0.40 -6.44 15 7 C -0.35 -9.53 9.68 -14.92 -0.14 -9.67 15 8 H 0.11 3.20 7.67 -52.48 -0.40 2.80 15 9 N -0.29 -7.33 2.41 -55.55 -0.13 -7.46 15 10 C 0.06 1.36 6.30 -81.67 -0.51 0.85 15 11 C 0.14 2.52 6.85 -4.98 -0.03 2.49 15 12 N -0.84 -14.20 9.61 -11.41 -0.11 -14.31 15 13 C -0.25 -5.26 10.95 -37.56 -0.41 -5.68 15 14 C -0.12 -2.78 6.37 -105.09 -0.67 -3.45 15 15 C -0.09 -1.70 10.10 -39.28 -0.40 -2.10 15 16 C -0.17 -3.14 10.03 -39.56 -0.40 -3.54 15 17 C -0.13 -2.77 10.02 -39.52 -0.40 -3.17 15 18 C -0.11 -2.52 6.75 -39.44 -0.27 -2.79 15 19 C 0.06 1.58 5.21 -83.84 -0.44 1.15 15 20 H 0.28 7.27 8.31 -40.82 -0.34 6.93 15 21 H 0.08 1.53 7.57 -51.92 -0.39 1.14 15 22 H 0.04 0.54 8.14 -51.93 -0.42 0.12 15 23 H 0.34 4.50 9.08 -39.29 -0.36 4.15 15 24 H 0.34 5.37 8.98 -39.29 -0.35 5.01 15 25 H 0.13 2.25 8.06 -52.49 -0.42 1.82 15 26 H 0.11 1.79 8.06 -52.49 -0.42 1.36 15 27 H 0.11 1.66 8.06 -52.48 -0.42 1.23 15 28 H 0.11 1.92 8.06 -52.49 -0.42 1.50 15 29 H 0.12 2.87 5.78 -52.48 -0.30 2.57 15 LS Contribution 245.02 15.07 3.69 3.69 Total: -1.00 -30.05 245.02 -6.84 -36.89 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: -3.15 Total: 9.91 kcal Atomic # 6 Polarization: -19.95 SS G_CDS: -3.75 Total: -23.70 kcal Atomic # 7 Polarization: -44.94 SS G_CDS: 0.53 Total: -44.41 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.17 Total: 17.61 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -30.05 -6.84 -36.89 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082635709.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.679 kcal (2) G-P(sol) polarization free energy of solvation -30.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.888 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds