Wall clock time and date at job start Mon Mar 30 2020 02:53:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 109.46765 * 2 1 4 4 C 1.52997 * 109.46943 * 240.00241 * 2 1 3 5 5 C 1.52996 * 109.47131 * 179.97438 * 4 2 1 6 6 C 1.53002 * 109.46972 * 60.00459 * 5 4 2 7 7 C 1.52997 * 109.46817 * 299.99733 * 6 5 4 8 8 H 1.09001 * 109.47502 * 300.00518 * 7 6 5 9 9 S 1.81399 * 109.47065 * 180.02562 * 7 6 5 10 10 O 1.42105 * 109.47108 * 305.94300 * 9 7 6 11 11 C 1.76195 * 103.00075 * 54.99962 * 9 7 6 12 12 H 1.07995 * 119.99831 * 0.02562 * 11 9 7 13 13 C 1.37879 * 119.99717 * 179.97438 * 11 9 7 14 14 N 1.31510 * 120.00361 * 0.02562 * 13 11 9 15 15 Si 1.86802 * 119.99594 * 179.97438 * 13 11 9 16 16 H 1.48494 * 109.47281 * 0.02562 * 15 13 11 17 17 H 1.48505 * 109.46844 * 120.00218 * 15 13 11 18 18 H 1.48503 * 109.47279 * 239.99897 * 15 13 11 19 19 C 1.52999 * 109.47000 * 120.00585 * 2 1 3 20 20 H 1.09000 * 109.46866 * 299.99600 * 1 2 3 21 21 H 1.09001 * 109.47372 * 60.00008 * 1 2 3 22 22 H 1.09004 * 109.47107 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47289 * 59.99701 * 4 2 1 24 24 H 1.09000 * 109.47611 * 300.00272 * 4 2 1 25 25 H 1.08996 * 109.47452 * 300.00000 * 5 4 2 26 26 H 1.09000 * 109.47054 * 180.02562 * 5 4 2 27 27 H 1.09002 * 109.47070 * 179.97438 * 6 5 4 28 28 H 1.08996 * 109.47407 * 59.99513 * 6 5 4 29 29 H 0.96999 * 120.00057 * 180.02562 * 14 13 11 30 30 H 1.08993 * 109.47839 * 60.00073 * 19 2 1 31 31 H 1.09000 * 109.47160 * 299.99635 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5700 -0.7207 -1.2496 6 6 4.0805 -1.4417 -0.0005 7 6 3.5705 -0.7205 1.2488 8 1 3.9335 0.3073 1.2487 9 16 4.1764 -1.5749 2.7299 10 8 3.8203 -2.9490 2.6630 11 6 5.9209 -1.6052 2.4842 12 1 6.3487 -1.1657 1.5953 13 6 6.7398 -2.1891 3.4274 14 7 6.2188 -2.7238 4.5101 15 14 8.5892 -2.2218 3.1666 16 1 8.9194 -1.5596 1.8792 17 1 9.2588 -1.5014 4.2793 18 1 9.0598 -3.6299 3.1345 19 6 2.0400 -0.7214 1.2492 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.6766 -0.2074 -2.1392 24 1 1.6767 -1.7488 -1.2494 25 1 3.9330 0.3071 -1.2498 26 1 3.9333 -1.2341 -2.1399 27 1 5.1705 -1.4417 -0.0009 28 1 3.7175 -2.4694 -0.0003 29 1 6.7950 -3.1342 5.1738 30 1 1.6768 -1.7490 1.2492 31 1 1.6767 -0.2076 2.1392 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082787870.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:39 Heat of formation + Delta-G solvation = -83.996445 kcal Electronic energy + Delta-G solvation = -13080.467740 eV Core-core repulsion = 10872.683429 eV Total energy + Delta-G solvation = -2207.784311 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.093 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.05184 -33.51029 -32.73702 -32.13232 -30.16277 -26.30822 -25.46194 -22.16358 -20.84134 -19.25465 -17.84389 -15.38308 -15.28182 -14.63446 -14.12103 -13.90703 -13.60169 -13.20143 -12.90284 -12.14789 -12.00645 -11.71081 -11.41390 -11.21433 -11.03751 -10.92256 -10.64474 -10.49819 -10.41016 -10.20561 -10.06385 -9.75723 -9.53719 -8.94943 -8.03733 -6.72986 -6.22990 -4.72959 3.12619 3.21087 3.26109 3.72662 4.23177 4.90516 5.05971 5.13801 5.24031 5.41050 5.59229 5.62396 5.85713 5.89139 6.00142 6.00486 6.06999 6.15552 6.24113 6.30196 6.35415 6.37685 6.60803 6.66847 6.74141 6.88139 6.93317 7.11529 7.54542 8.27130 9.15496 10.53223 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.051796 B = 0.008891 C = 0.008018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.451202 B = 3148.435470 C = 3491.426518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.089 4.089 3 H 0.066 0.934 4 C -0.110 4.110 5 C -0.116 4.116 6 C -0.098 4.098 7 C -0.442 4.442 8 H 0.096 0.904 9 S 1.340 4.660 10 O -0.904 6.904 11 C -0.817 4.817 12 H 0.080 0.920 13 C 0.119 3.881 14 N -0.857 5.857 15 Si 0.903 3.097 16 H -0.268 1.268 17 H -0.274 1.274 18 H -0.278 1.278 19 C -0.084 4.084 20 H 0.054 0.946 21 H 0.047 0.953 22 H 0.051 0.949 23 H 0.050 0.950 24 H 0.056 0.944 25 H 0.056 0.944 26 H 0.048 0.952 27 H 0.065 0.935 28 H 0.055 0.945 29 H 0.278 0.722 30 H 0.058 0.942 31 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.246 7.907 -5.090 11.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.108 4.108 3 H 0.085 0.915 4 C -0.147 4.147 5 C -0.155 4.155 6 C -0.136 4.136 7 C -0.553 4.553 8 H 0.114 0.886 9 S 1.539 4.461 10 O -0.899 6.899 11 C -0.958 4.958 12 H 0.099 0.901 13 C -0.094 4.094 14 N -0.491 5.491 15 Si 0.728 3.272 16 H -0.192 1.192 17 H -0.199 1.199 18 H -0.204 1.204 19 C -0.122 4.122 20 H 0.073 0.927 21 H 0.066 0.934 22 H 0.070 0.930 23 H 0.069 0.931 24 H 0.075 0.925 25 H 0.074 0.926 26 H 0.067 0.933 27 H 0.083 0.917 28 H 0.074 0.926 29 H 0.088 0.912 30 H 0.077 0.923 31 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -6.802 7.444 -4.189 10.920 hybrid contribution 1.921 -1.090 -2.117 3.059 sum -4.882 6.355 -6.307 10.197 Atomic orbital electron populations 1.21854 0.96048 1.01495 1.01028 1.21128 0.94392 0.99540 0.95730 0.91516 1.21541 0.96050 1.00220 0.96937 1.21566 0.95302 1.00394 0.98234 1.21384 1.00495 0.98605 0.93138 1.28057 1.00432 1.09793 1.16995 0.88579 1.68911 0.86858 0.95349 0.95032 1.92806 1.83086 1.34463 1.79569 1.27518 1.10277 1.45908 1.12129 0.90136 1.24749 1.00189 0.91037 0.93415 1.69910 1.37064 1.33262 1.08830 0.86413 0.83558 0.78293 0.78912 1.19198 1.19948 1.20404 1.21163 0.94114 1.00218 0.96701 0.92733 0.93359 0.92962 0.93098 0.92532 0.92557 0.93291 0.91661 0.92577 0.91188 0.92336 0.91837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 9.19 37.16 0.34 -1.46 16 2 C -0.09 -1.29 2.72 -90.62 -0.25 -1.53 16 3 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 4 C -0.11 -1.65 5.20 -26.73 -0.14 -1.79 16 5 C -0.12 -1.93 5.92 -26.73 -0.16 -2.09 16 6 C -0.10 -2.02 4.94 -26.73 -0.13 -2.15 16 7 C -0.44 -8.69 2.69 -26.71 -0.07 -8.76 16 8 H 0.10 1.71 8.14 -51.92 -0.42 1.29 16 9 S 1.34 32.48 12.54 -107.50 -1.35 31.13 16 10 O -0.90 -27.60 17.69 -35.23 -0.62 -28.22 16 11 C -0.82 -22.18 8.74 30.60 0.27 -21.92 16 12 H 0.08 2.13 6.66 -52.49 -0.35 1.78 16 13 C 0.12 3.28 5.46 -17.82 -0.10 3.19 16 14 N -0.86 -24.55 13.15 55.43 0.73 -23.82 16 15 Si 0.90 20.91 29.54 -169.99 -5.02 15.89 16 16 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 17 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 18 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 19 C -0.08 -1.44 4.50 -26.70 -0.12 -1.56 16 20 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 21 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 22 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 23 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 25 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 26 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.06 1.44 6.51 -51.93 -0.34 1.10 16 28 H 0.06 1.29 8.10 -51.93 -0.42 0.87 16 29 H 0.28 7.33 8.31 -40.82 -0.34 6.99 16 30 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 LS Contribution 262.75 15.07 3.96 3.96 Total: -1.00 -33.25 262.75 -7.55 -40.81 By element: Atomic # 1 Polarization: 3.21 SS G_CDS: -4.89 Total: -1.68 kcal Atomic # 6 Polarization: -37.71 SS G_CDS: -0.36 Total: -38.06 kcal Atomic # 7 Polarization: -24.55 SS G_CDS: 0.73 Total: -23.82 kcal Atomic # 8 Polarization: -27.60 SS G_CDS: -0.62 Total: -28.22 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Atomic # 16 Polarization: 32.48 SS G_CDS: -1.35 Total: 31.13 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -33.25 -7.55 -40.81 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082787870.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.188 kcal (2) G-P(sol) polarization free energy of solvation -33.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds