Wall clock time and date at job start Mon Mar 30 2020 02:54:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.46906 * 2 1 4 4 C 1.50700 * 109.47259 * 240.00162 * 2 1 3 5 5 H 1.07997 * 119.99559 * 240.00574 * 4 2 1 6 6 C 1.37874 * 119.99773 * 59.99647 * 4 2 1 7 7 N 1.31509 * 120.00523 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99712 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47035 * 0.02562 * 8 6 4 10 10 H 1.48499 * 109.46974 * 120.00515 * 8 6 4 11 11 H 1.48497 * 109.47113 * 240.00217 * 8 6 4 12 12 S 1.81400 * 109.47039 * 119.99740 * 2 1 3 13 13 O 1.42099 * 109.46918 * 188.60879 * 12 2 1 14 14 C 1.81399 * 103.00326 * 305.00186 * 12 2 1 15 15 C 1.54269 * 110.03124 * 302.90734 * 14 12 2 16 16 C 1.54962 * 104.15686 * 217.13518 * 15 14 12 17 17 C 1.54886 * 102.77927 * 37.89109 * 16 15 14 18 18 C 1.53872 * 110.03290 * 185.68980 * 14 12 2 19 19 H 1.09002 * 109.47115 * 59.99706 * 1 2 3 20 20 H 1.08994 * 109.47079 * 179.97438 * 1 2 3 21 21 H 1.09000 * 109.46985 * 300.00200 * 1 2 3 22 22 H 0.96997 * 120.00326 * 179.97438 * 7 6 4 23 23 H 1.08999 * 110.01495 * 64.29581 * 14 12 2 24 24 H 1.09000 * 110.48226 * 335.78259 * 15 14 12 25 25 H 1.08998 * 110.48594 * 98.42672 * 15 14 12 26 26 H 1.09000 * 110.72216 * 279.57316 * 16 15 14 27 27 H 1.09002 * 110.91683 * 156.29659 * 16 15 14 28 28 H 1.08999 * 110.48386 * 203.40793 * 17 16 15 29 29 H 1.08998 * 110.60278 * 80.81376 * 17 16 15 30 30 H 1.09000 * 110.03326 * 238.57238 * 18 14 12 31 31 H 1.09002 * 110.03129 * 359.97438 * 18 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2393 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3214 -1.1203 -4.0079 9 1 3.1455 -2.2876 -3.6037 10 1 1.1661 -1.5865 -4.8161 11 1 3.1466 -0.1873 -4.8164 12 16 2.1347 -0.8551 1.4812 13 8 3.5414 -0.6839 1.5858 14 6 1.3148 0.0375 2.8309 15 6 1.6642 1.5384 2.7608 16 6 1.7955 1.9667 4.2443 17 6 2.4748 0.7373 4.8970 18 6 1.8295 -0.4718 4.1887 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3633 0.5139 0.8900 22 1 0.7095 1.1618 -3.4844 23 1 0.2353 -0.0980 2.7662 24 1 2.6082 1.6862 2.2362 25 1 0.8639 2.0939 2.2719 26 1 0.8135 2.1438 4.6830 27 1 2.4248 2.8516 4.3396 28 1 2.2657 0.7090 5.9664 29 1 3.5501 0.7540 4.7197 30 1 0.9996 -0.8537 4.7832 31 1 2.5716 -1.2556 4.0365 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082789585.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:48 Heat of formation + Delta-G solvation = -83.234175 kcal Electronic energy + Delta-G solvation = -13100.484697 eV Core-core repulsion = 10892.733440 eV Total energy + Delta-G solvation = -2207.751257 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.093 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.68857 -36.44161 -35.95566 -32.39030 -29.70950 -29.63710 -27.20598 -23.39761 -21.65054 -21.40129 -18.66485 -18.08030 -17.32106 -16.58445 -16.38811 -15.44130 -15.23816 -14.66664 -14.46313 -14.12822 -13.27352 -13.18471 -12.96279 -12.79157 -12.45556 -12.32767 -12.22268 -12.15465 -12.04851 -11.97218 -11.67231 -11.47219 -11.13386 -10.63840 -10.27236 -8.80934 -8.16852 -6.36227 1.00277 1.38156 1.40722 1.53074 2.15361 2.38942 3.05972 3.21455 3.58274 3.70568 3.99755 4.42180 4.45703 4.60833 4.65729 4.79772 4.80383 4.85417 4.97871 5.00001 5.03481 5.12411 5.16848 5.31574 5.40881 5.45655 5.67107 5.91660 6.21946 6.73402 7.32065 8.86901 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.055823 B = 0.008663 C = 0.008139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 501.461150 B = 3231.195071 C = 3439.257362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.234 4.234 3 H -0.002 1.002 4 C -0.531 4.531 5 H 0.058 0.942 6 C 0.021 3.979 7 N -0.909 5.909 8 Si 0.955 3.045 9 H -0.265 1.265 10 H -0.265 1.265 11 H -0.287 1.287 12 S 1.242 4.758 13 O -0.931 6.931 14 C -0.409 4.409 15 C -0.120 4.120 16 C -0.114 4.114 17 C -0.127 4.127 18 C -0.095 4.095 19 H 0.056 0.944 20 H 0.067 0.933 21 H 0.050 0.950 22 H 0.264 0.736 23 H 0.153 0.847 24 H 0.015 0.985 25 H 0.070 0.930 26 H 0.094 0.906 27 H 0.060 0.940 28 H 0.096 0.904 29 H 0.039 0.961 30 H 0.111 0.889 31 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.101 -3.337 12.105 13.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.354 4.354 3 H 0.016 0.984 4 C -0.570 4.570 5 H 0.076 0.924 6 C -0.180 4.180 7 N -0.547 5.547 8 Si 0.780 3.220 9 H -0.189 1.189 10 H -0.190 1.190 11 H -0.213 1.213 12 S 1.447 4.553 13 O -0.927 6.927 14 C -0.528 4.528 15 C -0.159 4.159 16 C -0.152 4.152 17 C -0.165 4.165 18 C -0.133 4.133 19 H 0.075 0.925 20 H 0.086 0.914 21 H 0.069 0.931 22 H 0.073 0.927 23 H 0.171 0.829 24 H 0.034 0.966 25 H 0.089 0.911 26 H 0.112 0.888 27 H 0.079 0.921 28 H 0.115 0.885 29 H 0.058 0.942 30 H 0.129 0.871 31 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.512 -4.015 12.058 13.487 hybrid contribution 1.238 2.290 -1.419 2.965 sum -3.274 -1.725 10.639 11.264 Atomic orbital electron populations 1.21439 0.92860 1.01824 1.01275 1.24730 1.01568 1.01489 1.07654 0.98391 1.20907 1.32124 1.12998 0.90923 0.92428 1.25724 0.94816 0.95552 1.01875 1.70015 1.36896 1.23631 1.24173 0.85541 0.78651 0.78715 0.79086 1.18917 1.18954 1.21293 1.68697 0.87535 1.12722 0.86369 1.92878 1.29233 1.85025 1.85530 1.28220 1.11394 1.02878 1.10287 1.22370 0.99240 0.95383 0.98862 1.22495 1.01792 0.97627 0.93323 1.22409 0.98637 0.94612 1.00839 1.21879 1.00976 0.97596 0.92894 0.92486 0.91421 0.93136 0.92717 0.82912 0.96578 0.91083 0.88760 0.92093 0.88543 0.94223 0.87069 0.92826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.86 8.74 71.98 0.63 -4.23 16 2 C -0.23 -11.61 2.42 29.85 0.07 -11.54 16 3 H 0.00 -0.13 7.92 -2.39 -0.02 -0.15 16 4 C -0.53 -29.57 8.58 25.60 0.22 -29.35 16 5 H 0.06 3.18 7.71 -2.91 -0.02 3.16 16 6 C 0.02 1.19 5.30 84.65 0.45 1.63 16 7 N -0.91 -52.25 11.32 21.45 0.24 -52.01 16 8 Si 0.96 43.65 29.54 68.60 2.03 45.67 16 9 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 10 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 11 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 12 S 1.24 49.86 11.69 -56.49 -0.66 49.20 16 13 O -0.93 -49.36 17.89 -148.98 -2.67 -52.03 16 14 C -0.41 -12.40 2.73 31.32 0.09 -12.31 16 15 C -0.12 -4.12 5.75 31.70 0.18 -3.94 16 16 C -0.11 -3.00 6.91 31.91 0.22 -2.78 16 17 C -0.13 -3.22 6.83 31.67 0.22 -3.01 16 18 C -0.10 -2.40 6.48 31.32 0.20 -2.20 16 19 H 0.06 2.82 6.07 -2.39 -0.01 2.81 16 20 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 21 H 0.05 1.74 6.63 -2.39 -0.02 1.72 16 22 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 23 H 0.15 3.59 7.17 -2.39 -0.02 3.57 16 24 H 0.02 0.67 7.62 -2.39 -0.02 0.65 16 25 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 26 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 27 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.05 1.47 7.58 -2.39 -0.02 1.46 16 Total: -1.00 -73.50 261.51 2.31 -71.19 By element: Atomic # 1 Polarization: 4.62 SS G_CDS: 1.09 Total: 5.70 kcal Atomic # 6 Polarization: -70.00 SS G_CDS: 2.28 Total: -67.73 kcal Atomic # 7 Polarization: -52.25 SS G_CDS: 0.24 Total: -52.01 kcal Atomic # 8 Polarization: -49.36 SS G_CDS: -2.67 Total: -52.03 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.67 kcal Atomic # 16 Polarization: 49.86 SS G_CDS: -0.66 Total: 49.20 kcal Total: -73.50 2.31 -71.19 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082789585.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.047 kcal (2) G-P(sol) polarization free energy of solvation -73.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds