Wall clock time and date at job start Mon Mar 30 2020 02:54:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.47109 * 2 1 4 4 C 1.50697 * 109.47303 * 239.99210 * 2 1 3 5 5 H 1.07991 * 120.00449 * 239.72787 * 4 2 1 6 6 C 1.37885 * 119.99686 * 60.00618 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.72095 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.72528 * 6 4 2 9 9 H 1.48498 * 109.47416 * 59.99812 * 8 6 4 10 10 H 1.48508 * 109.46609 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.46903 * 299.99397 * 8 6 4 12 12 S 1.81402 * 109.46584 * 119.99605 * 2 1 3 13 13 O 1.42103 * 109.47007 * 61.39114 * 12 2 1 14 14 C 1.81392 * 103.00234 * 304.99818 * 12 2 1 15 15 C 1.54270 * 110.03592 * 302.91057 * 14 12 2 16 16 C 1.54962 * 104.16094 * 217.13566 * 15 14 12 17 17 C 1.54896 * 102.77826 * 37.88317 * 16 15 14 18 18 C 1.53874 * 110.03523 * 185.68840 * 14 12 2 19 19 H 1.08994 * 109.47204 * 300.00358 * 1 2 3 20 20 H 1.09006 * 109.46531 * 60.00353 * 1 2 3 21 21 H 1.08998 * 109.47109 * 180.02562 * 1 2 3 22 22 H 0.97000 * 119.99651 * 180.02562 * 7 6 4 23 23 H 1.09005 * 110.01660 * 64.30354 * 14 12 2 24 24 H 1.08997 * 110.48143 * 335.78091 * 15 14 12 25 25 H 1.09000 * 110.48614 * 98.42406 * 15 14 12 26 26 H 1.08997 * 110.71811 * 279.57348 * 16 15 14 27 27 H 1.09000 * 110.92073 * 156.29465 * 16 15 14 28 28 H 1.08995 * 110.48416 * 203.40327 * 17 16 15 29 29 H 1.09000 * 110.59566 * 80.81843 * 17 16 15 30 30 H 1.08998 * 110.03722 * 238.57138 * 18 14 12 31 31 H 1.08998 * 110.03281 * 359.95538 * 18 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7106 -1.2303 5 1 2.6569 -1.5860 -1.1312 6 6 1.6994 -0.2395 -2.4827 7 7 0.9389 0.8266 -2.6035 8 14 2.3284 -1.1158 -4.0078 9 1 1.8395 -2.5180 -4.0102 10 1 1.8329 -0.4161 -5.2204 11 1 3.8135 -1.1093 -4.0053 12 16 2.1346 -0.8551 1.4812 13 8 1.6876 -2.2039 1.4651 14 6 1.3148 0.0376 2.8309 15 6 1.6642 1.5386 2.7607 16 6 1.7955 1.9670 4.2442 17 6 2.4746 0.7374 4.8970 18 6 1.8293 -0.4716 4.1887 19 1 -0.3633 0.5139 0.8899 20 1 -0.3632 0.5138 -0.8901 21 1 -0.3633 -1.0276 0.0005 22 1 0.7043 1.1577 -3.4845 23 1 0.2352 -0.0979 2.7662 24 1 2.6082 1.6863 2.2362 25 1 0.8639 2.0941 2.2718 26 1 0.8135 2.1440 4.6827 27 1 2.4248 2.8518 4.3395 28 1 2.2656 0.7093 5.9664 29 1 3.5499 0.7541 4.7198 30 1 0.9994 -0.8534 4.7833 31 1 2.5711 -1.2557 4.0367 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082789588.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:51 Heat of formation + Delta-G solvation = -61.526836 kcal Electronic energy + Delta-G solvation = -13065.567282 eV Core-core repulsion = 10858.757327 eV Total energy + Delta-G solvation = -2206.809956 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.093 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -37.44538 -34.54878 -33.96633 -30.46639 -28.46945 -28.30655 -25.25662 -21.47231 -20.38544 -20.16391 -16.74276 -16.23693 -15.92940 -15.05153 -14.74207 -13.81876 -13.44298 -13.13644 -12.88198 -12.54920 -11.76103 -11.30435 -11.11935 -10.98941 -10.92616 -10.87634 -10.78558 -10.72046 -10.47674 -10.39330 -10.24394 -10.16162 -9.19100 -8.67985 -8.38355 -7.08486 -6.08648 -4.20726 2.63408 3.28900 3.32511 3.37713 3.83047 4.36421 4.67315 4.86832 5.07185 5.13196 5.22750 5.64153 5.71058 5.77877 5.86846 5.99093 6.05804 6.11468 6.23909 6.43387 6.46110 6.56878 6.66119 6.77525 6.83674 7.39237 7.68923 7.81955 8.16340 8.80440 9.44188 10.95476 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.052285 B = 0.008704 C = 0.008097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.398356 B = 3216.072472 C = 3457.129946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.222 4.222 3 H 0.079 0.921 4 C -0.508 4.508 5 H 0.062 0.938 6 C 0.071 3.929 7 N -0.884 5.884 8 Si 0.897 3.103 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.272 1.272 12 S 1.193 4.807 13 O -0.868 6.868 14 C -0.420 4.420 15 C -0.090 4.090 16 C -0.122 4.122 17 C -0.122 4.122 18 C -0.090 4.090 19 H 0.013 0.987 20 H 0.091 0.909 21 H 0.029 0.971 22 H 0.263 0.737 23 H 0.082 0.918 24 H 0.078 0.922 25 H 0.068 0.932 26 H 0.060 0.940 27 H 0.065 0.935 28 H 0.059 0.941 29 H 0.070 0.930 30 H 0.058 0.942 31 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.344 4.026 10.821 12.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.344 4.344 3 H 0.097 0.903 4 C -0.547 4.547 5 H 0.080 0.920 6 C -0.133 4.133 7 N -0.521 5.521 8 Si 0.724 3.276 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.197 1.197 12 S 1.395 4.605 13 O -0.864 6.864 14 C -0.535 4.535 15 C -0.129 4.129 16 C -0.160 4.160 17 C -0.160 4.160 18 C -0.129 4.129 19 H 0.032 0.968 20 H 0.109 0.891 21 H 0.048 0.952 22 H 0.073 0.927 23 H 0.101 0.899 24 H 0.097 0.903 25 H 0.087 0.913 26 H 0.079 0.921 27 H 0.084 0.916 28 H 0.078 0.922 29 H 0.089 0.911 30 H 0.077 0.923 31 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.868 3.332 10.793 12.300 hybrid contribution -2.217 -0.532 -1.138 2.548 sum 2.651 2.800 9.655 10.397 Atomic orbital electron populations 1.21828 0.97145 0.99746 1.01180 1.24676 0.99011 1.04595 1.06074 0.90291 1.20485 1.32355 1.12568 0.89335 0.92013 1.24919 0.94620 0.94772 0.98940 1.69867 1.35737 1.22787 1.23727 0.86572 0.79472 0.79869 0.81710 1.20115 1.21099 1.19727 1.69566 1.17070 0.85527 0.88304 1.92995 1.82081 1.26258 1.85055 1.28188 1.08925 1.05307 1.11098 1.22007 1.02162 0.92306 0.96398 1.22495 1.00156 0.97365 0.95982 1.22365 1.00085 0.94738 0.98806 1.21705 0.99719 0.97558 0.93879 0.96848 0.89087 0.95167 0.92728 0.89944 0.90333 0.91344 0.92138 0.91584 0.92189 0.91100 0.92348 0.91862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.51 8.74 37.16 0.32 -3.19 16 2 C -0.22 -5.37 2.42 -27.88 -0.07 -5.44 16 3 H 0.08 1.85 7.92 -51.92 -0.41 1.44 16 4 C -0.51 -13.99 8.57 -34.44 -0.30 -14.29 16 5 H 0.06 1.71 7.71 -52.49 -0.40 1.30 16 6 C 0.07 1.96 5.31 -17.82 -0.09 1.87 16 7 N -0.88 -24.84 11.31 55.43 0.63 -24.21 16 8 Si 0.90 21.32 29.54 -169.99 -5.02 16.30 16 9 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 10 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 12 S 1.19 24.12 11.64 -107.50 -1.25 22.87 16 13 O -0.87 -22.77 18.12 -35.23 -0.64 -23.41 16 14 C -0.42 -7.01 2.73 -25.61 -0.07 -7.08 16 15 C -0.09 -1.28 5.75 -25.03 -0.14 -1.42 16 16 C -0.12 -1.41 6.91 -24.70 -0.17 -1.58 16 17 C -0.12 -1.38 6.83 -25.07 -0.17 -1.55 16 18 C -0.09 -1.28 6.48 -25.61 -0.17 -1.45 16 19 H 0.01 0.28 6.63 -51.93 -0.34 -0.06 16 20 H 0.09 2.47 6.06 -51.93 -0.31 2.15 16 21 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 22 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 23 H 0.08 1.53 7.18 -51.93 -0.37 1.16 16 24 H 0.08 1.01 7.81 -51.93 -0.41 0.60 16 25 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 26 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.06 0.89 7.60 -51.93 -0.39 0.49 16 LS Contribution 261.87 15.07 3.95 3.95 Total: -1.00 -32.96 261.87 -7.93 -40.89 By element: Atomic # 1 Polarization: 2.48 SS G_CDS: -4.74 Total: -2.26 kcal Atomic # 6 Polarization: -33.27 SS G_CDS: -0.85 Total: -34.12 kcal Atomic # 7 Polarization: -24.84 SS G_CDS: 0.63 Total: -24.21 kcal Atomic # 8 Polarization: -22.77 SS G_CDS: -0.64 Total: -23.41 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: 24.12 SS G_CDS: -1.25 Total: 22.87 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -32.96 -7.93 -40.89 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082789588.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.635 kcal (2) G-P(sol) polarization free energy of solvation -32.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds