Wall clock time and date at job start Mon Mar 30 2020 02:54:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.47109 * 2 1 4 4 C 1.50697 * 109.47303 * 239.99210 * 2 1 3 5 5 H 1.07991 * 120.00449 * 239.72787 * 4 2 1 6 6 C 1.37885 * 119.99686 * 60.00618 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.72095 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.72528 * 6 4 2 9 9 H 1.48498 * 109.47416 * 59.99812 * 8 6 4 10 10 H 1.48508 * 109.46609 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.46903 * 299.99397 * 8 6 4 12 12 S 1.81402 * 109.46584 * 119.99605 * 2 1 3 13 13 O 1.42103 * 109.47007 * 61.39114 * 12 2 1 14 14 C 1.81392 * 103.00234 * 304.99818 * 12 2 1 15 15 C 1.54270 * 110.03592 * 302.91057 * 14 12 2 16 16 C 1.54962 * 104.16094 * 217.13566 * 15 14 12 17 17 C 1.54896 * 102.77826 * 37.88317 * 16 15 14 18 18 C 1.53874 * 110.03523 * 185.68840 * 14 12 2 19 19 H 1.08994 * 109.47204 * 300.00358 * 1 2 3 20 20 H 1.09006 * 109.46531 * 60.00353 * 1 2 3 21 21 H 1.08998 * 109.47109 * 180.02562 * 1 2 3 22 22 H 0.97000 * 119.99651 * 180.02562 * 7 6 4 23 23 H 1.09005 * 110.01660 * 64.30354 * 14 12 2 24 24 H 1.08997 * 110.48143 * 335.78091 * 15 14 12 25 25 H 1.09000 * 110.48614 * 98.42406 * 15 14 12 26 26 H 1.08997 * 110.71811 * 279.57348 * 16 15 14 27 27 H 1.09000 * 110.92073 * 156.29465 * 16 15 14 28 28 H 1.08995 * 110.48416 * 203.40327 * 17 16 15 29 29 H 1.09000 * 110.59566 * 80.81843 * 17 16 15 30 30 H 1.08998 * 110.03722 * 238.57138 * 18 14 12 31 31 H 1.08998 * 110.03281 * 359.95538 * 18 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7106 -1.2303 5 1 2.6569 -1.5860 -1.1312 6 6 1.6994 -0.2395 -2.4827 7 7 0.9389 0.8266 -2.6035 8 14 2.3284 -1.1158 -4.0078 9 1 1.8395 -2.5180 -4.0102 10 1 1.8329 -0.4161 -5.2204 11 1 3.8135 -1.1093 -4.0053 12 16 2.1346 -0.8551 1.4812 13 8 1.6876 -2.2039 1.4651 14 6 1.3148 0.0376 2.8309 15 6 1.6642 1.5386 2.7607 16 6 1.7955 1.9670 4.2442 17 6 2.4746 0.7374 4.8970 18 6 1.8293 -0.4716 4.1887 19 1 -0.3633 0.5139 0.8899 20 1 -0.3632 0.5138 -0.8901 21 1 -0.3633 -1.0276 0.0005 22 1 0.7043 1.1577 -3.4845 23 1 0.2352 -0.0979 2.7662 24 1 2.6082 1.6863 2.2362 25 1 0.8639 2.0941 2.2718 26 1 0.8135 2.1440 4.6827 27 1 2.4248 2.8518 4.3395 28 1 2.2656 0.7093 5.9664 29 1 3.5499 0.7541 4.7198 30 1 0.9994 -0.8534 4.7833 31 1 2.5711 -1.2557 4.0367 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082789588.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:51 Heat of formation + Delta-G solvation = -83.465306 kcal Electronic energy + Delta-G solvation = -13066.518606 eV Core-core repulsion = 10858.757327 eV Total energy + Delta-G solvation = -2207.761279 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.093 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.55344 -36.48304 -35.99520 -32.47613 -29.61839 -29.45222 -27.32979 -23.42728 -21.52674 -21.30355 -18.55357 -18.08184 -17.41445 -16.60175 -16.33136 -15.51828 -14.96065 -14.65915 -14.26217 -14.16465 -13.66929 -13.23206 -12.90795 -12.81998 -12.60187 -12.37378 -12.26952 -11.97718 -11.87055 -11.77488 -11.66807 -11.33416 -11.21462 -10.64180 -10.26199 -8.87790 -8.16847 -6.36027 0.99259 1.38747 1.41005 1.48763 2.13094 2.38185 3.05769 3.18181 3.72698 3.79849 4.12988 4.53541 4.58175 4.62514 4.63781 4.71409 4.79861 4.83027 4.93952 5.02396 5.20467 5.30807 5.34485 5.38212 5.38948 5.59800 5.61216 5.71166 6.10865 6.71468 7.31511 8.85576 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.052285 B = 0.008704 C = 0.008097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.398356 B = 3216.072472 C = 3457.129946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.238 4.238 3 H 0.087 0.913 4 C -0.533 4.533 5 H 0.051 0.949 6 C 0.025 3.975 7 N -0.906 5.906 8 Si 0.951 3.049 9 H -0.285 1.285 10 H -0.277 1.277 11 H -0.255 1.255 12 S 1.244 4.756 13 O -0.932 6.932 14 C -0.408 4.408 15 C -0.097 4.097 16 C -0.116 4.116 17 C -0.115 4.115 18 C -0.097 4.097 19 H 0.040 0.960 20 H 0.068 0.932 21 H 0.000 1.000 22 H 0.265 0.735 23 H 0.062 0.938 24 H 0.094 0.906 25 H 0.059 0.941 26 H 0.061 0.939 27 H 0.092 0.908 28 H 0.080 0.920 29 H 0.090 0.910 30 H 0.058 0.942 31 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.532 5.153 12.184 14.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.358 4.358 3 H 0.104 0.896 4 C -0.572 4.572 5 H 0.070 0.930 6 C -0.176 4.176 7 N -0.544 5.544 8 Si 0.776 3.224 9 H -0.211 1.211 10 H -0.202 1.202 11 H -0.180 1.180 12 S 1.449 4.551 13 O -0.928 6.928 14 C -0.527 4.527 15 C -0.135 4.135 16 C -0.154 4.154 17 C -0.153 4.153 18 C -0.136 4.136 19 H 0.059 0.941 20 H 0.087 0.913 21 H 0.019 0.981 22 H 0.074 0.926 23 H 0.081 0.919 24 H 0.113 0.887 25 H 0.078 0.922 26 H 0.079 0.921 27 H 0.110 0.890 28 H 0.098 0.902 29 H 0.109 0.891 30 H 0.077 0.923 31 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 6.073 4.449 12.117 14.265 hybrid contribution -2.644 -0.840 -1.437 3.124 sum 3.428 3.610 10.681 11.784 Atomic orbital electron populations 1.21707 0.98183 0.97718 1.01403 1.24782 0.98076 1.05316 1.07639 0.89550 1.20819 1.32613 1.12610 0.91144 0.93034 1.25666 0.94841 0.95491 1.01650 1.69958 1.36330 1.23707 1.24373 0.85711 0.79891 0.78137 0.78644 1.21075 1.20150 1.17960 1.68725 1.16401 0.83140 0.86859 1.92879 1.83613 1.30327 1.86008 1.28061 1.07277 1.06924 1.10445 1.22152 1.02645 0.89746 0.98983 1.22498 1.00965 0.98505 0.93413 1.22396 1.00937 0.92447 0.99538 1.21832 1.00080 0.99233 0.92413 0.94114 0.91337 0.98111 0.92581 0.91918 0.88742 0.92175 0.92065 0.88956 0.90165 0.89105 0.92293 0.91813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.72 8.74 71.98 0.63 -6.09 16 2 C -0.24 -11.63 2.42 29.85 0.07 -11.56 16 3 H 0.09 4.04 7.92 -2.39 -0.02 4.02 16 4 C -0.53 -29.83 8.57 25.60 0.22 -29.61 16 5 H 0.05 2.91 7.71 -2.92 -0.02 2.89 16 6 C 0.02 1.38 5.31 84.66 0.45 1.83 16 7 N -0.91 -51.38 11.31 21.45 0.24 -51.14 16 8 Si 0.95 43.81 29.54 68.60 2.03 45.84 16 9 H -0.28 -13.44 7.11 99.48 0.71 -12.74 16 10 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 11 H -0.26 -11.00 7.11 99.48 0.71 -10.30 16 12 S 1.24 50.18 11.64 -56.49 -0.66 49.52 16 13 O -0.93 -49.87 18.12 -148.98 -2.70 -52.57 16 14 C -0.41 -13.04 2.73 31.32 0.09 -12.96 16 15 C -0.10 -2.48 5.75 31.70 0.18 -2.30 16 16 C -0.12 -2.21 6.91 31.91 0.22 -1.99 16 17 C -0.12 -2.11 6.83 31.67 0.22 -1.89 16 18 C -0.10 -2.53 6.48 31.32 0.20 -2.32 16 19 H 0.04 1.78 6.63 -2.39 -0.02 1.77 16 20 H 0.07 3.80 6.06 -2.38 -0.01 3.78 16 21 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 22 H 0.26 14.26 8.31 -92.71 -0.77 13.49 16 23 H 0.06 2.28 7.18 -2.38 -0.02 2.26 16 24 H 0.09 2.14 7.81 -2.39 -0.02 2.12 16 25 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 26 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.06 1.54 8.14 -2.39 -0.02 1.53 16 31 H 0.06 1.66 7.60 -2.39 -0.02 1.64 16 Total: -1.00 -71.98 261.87 2.28 -69.70 By element: Atomic # 1 Polarization: 4.46 SS G_CDS: 1.09 Total: 5.55 kcal Atomic # 6 Polarization: -69.18 SS G_CDS: 2.28 Total: -66.90 kcal Atomic # 7 Polarization: -51.38 SS G_CDS: 0.24 Total: -51.14 kcal Atomic # 8 Polarization: -49.87 SS G_CDS: -2.70 Total: -52.57 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Atomic # 16 Polarization: 50.18 SS G_CDS: -0.66 Total: 49.52 kcal Total: -71.98 2.28 -69.70 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082789588.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.766 kcal (2) G-P(sol) polarization free energy of solvation -71.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds