Wall clock time and date at job start Mon Mar 30 2020 02:44:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 120.00332 * 2 1 4 4 H 1.48496 * 109.47064 * 270.00328 * 3 2 1 5 5 H 1.48509 * 109.46960 * 29.99863 * 3 2 1 6 6 H 1.48499 * 109.47376 * 150.00031 * 3 2 1 7 7 C 1.37879 * 119.99942 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00192 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99990 * 0.02562 * 7 2 1 10 10 S 1.81400 * 109.47118 * 179.97438 * 9 7 2 11 11 O 1.42095 * 109.47045 * 296.38652 * 10 9 7 12 12 C 1.81399 * 102.99964 * 179.97438 * 10 9 7 13 13 C 1.53002 * 109.47404 * 179.97438 * 12 10 9 14 14 C 1.55238 * 110.58012 * 289.87798 * 13 12 10 15 15 C 1.54894 * 102.58338 * 203.33342 * 14 13 12 16 16 C 1.54266 * 104.31305 * 37.93170 * 15 14 13 17 17 C 1.53869 * 106.60031 * 336.32486 * 16 15 14 18 18 H 0.96999 * 119.99958 * 359.97438 * 1 2 3 19 19 H 1.08997 * 109.47430 * 59.99593 * 9 7 2 20 20 H 1.09002 * 109.46937 * 299.99643 * 9 7 2 21 21 H 1.09008 * 109.47188 * 60.00033 * 12 10 9 22 22 H 1.09000 * 109.47721 * 300.00289 * 12 10 9 23 23 H 1.09006 * 110.43291 * 52.46048 * 13 12 10 24 24 H 1.08996 * 110.89448 * 85.04906 * 14 13 12 25 25 H 1.08993 * 110.76342 * 321.56571 * 14 13 12 26 26 H 1.09002 * 110.48891 * 279.18596 * 15 14 13 27 27 H 1.08998 * 110.48494 * 156.67683 * 15 14 13 28 28 H 1.09001 * 110.03084 * 95.60669 * 16 15 14 29 29 H 1.08996 * 110.03108 * 216.98559 * 16 15 14 30 30 H 1.08999 * 110.04012 * 119.28327 * 17 16 15 31 31 H 1.09006 * 110.02998 * 240.67078 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 16 2.4298 -3.8780 0.0005 11 8 3.1901 -3.8511 -1.1996 12 6 1.3515 -5.3367 0.0013 13 6 2.2083 -6.6043 0.0008 14 6 2.9223 -6.7797 -1.3665 15 6 3.2014 -8.3028 -1.4084 16 6 1.9495 -8.9377 -0.7686 17 6 1.3180 -7.8578 0.1273 18 1 -0.4850 0.8400 0.0004 19 1 0.6246 -2.5571 -0.8896 20 1 0.6241 -2.5567 0.8903 21 1 0.7220 -5.3237 -0.8885 22 1 0.7225 -5.3232 0.8915 23 1 2.9376 -6.5711 0.8102 24 1 3.8544 -6.2154 -1.3935 25 1 2.2666 -6.4844 -2.1855 26 1 4.0911 -8.5438 -0.8266 27 1 3.3169 -8.6412 -2.4381 28 1 1.2451 -9.2378 -1.5444 29 1 2.2343 -9.8020 -0.1687 30 1 0.3072 -7.6338 -0.2136 31 1 1.2958 -8.1978 1.1628 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082789665.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:24 Heat of formation + Delta-G solvation = -68.320477 kcal Electronic energy + Delta-G solvation = -12558.210524 eV Core-core repulsion = 10351.105974 eV Total energy + Delta-G solvation = -2207.104550 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.093 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -38.03847 -34.50896 -33.09733 -31.06466 -28.63815 -28.46962 -24.97508 -22.98317 -20.39430 -19.63963 -16.72290 -16.36323 -15.81465 -14.95204 -14.66162 -13.98523 -13.83083 -13.31885 -13.14604 -12.56265 -12.16804 -11.85584 -11.45436 -11.17061 -11.03202 -10.98894 -10.81476 -10.66876 -10.49437 -10.43638 -10.29059 -10.14386 -9.54856 -8.68011 -8.54470 -7.11061 -6.15634 -4.21764 2.59005 3.27791 3.33657 3.37960 3.87514 4.36522 4.70285 4.76646 4.83707 4.91533 5.22345 5.35907 5.55768 5.64600 5.72818 5.76671 5.80995 5.92382 6.01001 6.13353 6.18640 6.30979 6.43323 6.52192 6.64947 7.06568 7.15933 7.71584 8.04652 8.82815 9.42827 10.96449 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.077208 B = 0.006331 C = 0.006027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 362.570564 B = 4421.416119 C = 4644.463955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.066 3.934 3 Si 0.900 3.100 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.268 1.268 7 C -0.513 4.513 8 H 0.064 0.936 9 C -0.254 4.254 10 S 1.193 4.807 11 O -0.865 6.865 12 C -0.449 4.449 13 C -0.066 4.066 14 C -0.125 4.125 15 C -0.126 4.126 16 C -0.125 4.125 17 C -0.118 4.118 18 H 0.264 0.736 19 H 0.036 0.964 20 H 0.070 0.930 21 H 0.074 0.926 22 H 0.106 0.894 23 H 0.080 0.920 24 H 0.078 0.922 25 H 0.063 0.937 26 H 0.064 0.936 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.161 -13.779 3.846 14.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.138 4.138 3 Si 0.727 3.273 4 H -0.205 1.205 5 H -0.209 1.209 6 H -0.193 1.193 7 C -0.552 4.552 8 H 0.083 0.917 9 C -0.395 4.395 10 S 1.395 4.605 11 O -0.860 6.860 12 C -0.584 4.584 13 C -0.085 4.085 14 C -0.163 4.163 15 C -0.163 4.163 16 C -0.162 4.162 17 C -0.157 4.157 18 H 0.073 0.927 19 H 0.055 0.945 20 H 0.088 0.912 21 H 0.093 0.907 22 H 0.125 0.875 23 H 0.099 0.901 24 H 0.097 0.903 25 H 0.081 0.919 26 H 0.082 0.918 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.998 -13.687 3.823 14.763 hybrid contribution -1.302 0.942 -1.885 2.477 sum 2.696 -12.746 1.938 13.171 Atomic orbital electron populations 1.69971 1.06243 1.27072 1.49357 1.24994 0.94922 0.99441 0.94413 0.86455 0.79915 0.82526 0.78407 1.20492 1.20928 1.19284 1.20482 0.92797 0.89128 1.52824 0.91747 1.24889 1.06037 1.05914 1.02659 1.69641 0.90706 0.86733 1.13400 1.93012 1.57202 1.84519 1.51288 1.27827 1.11196 1.13181 1.06216 1.21595 0.96359 0.92567 0.97962 1.22734 1.01389 0.95150 0.97013 1.22374 0.97659 0.96078 1.00221 1.22136 0.97337 0.97986 0.98777 1.22240 0.99266 0.94724 0.99436 0.92681 0.94513 0.91203 0.90683 0.87532 0.90119 0.90288 0.91866 0.91753 0.92182 0.92344 0.92203 0.91928 0.91884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.27 13.29 55.43 0.74 -25.54 16 2 C 0.07 1.88 5.46 -17.82 -0.10 1.79 16 3 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 6 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 7 C -0.51 -14.41 9.13 -34.44 -0.31 -14.72 16 8 H 0.06 1.77 7.71 -52.49 -0.40 1.36 16 9 C -0.25 -6.34 5.68 36.01 0.20 -6.13 16 10 S 1.19 23.13 13.00 -107.50 -1.40 21.73 16 11 O -0.86 -21.40 16.49 -35.23 -0.58 -21.98 16 12 C -0.45 -7.14 5.26 37.16 0.20 -6.95 16 13 C -0.07 -0.92 2.85 -88.77 -0.25 -1.17 16 14 C -0.13 -1.92 5.38 -24.55 -0.13 -2.05 16 15 C -0.13 -1.52 6.82 -25.07 -0.17 -1.69 16 16 C -0.12 -1.38 6.80 -25.62 -0.17 -1.55 16 17 C -0.12 -1.41 6.37 -25.62 -0.16 -1.57 16 18 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 19 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 20 H 0.07 1.68 8.14 -51.92 -0.42 1.25 16 21 H 0.07 1.32 8.03 -51.92 -0.42 0.90 16 22 H 0.11 1.45 8.14 -51.92 -0.42 1.03 16 23 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 24 H 0.08 1.33 7.37 -51.93 -0.38 0.95 16 25 H 0.06 1.08 7.98 -51.93 -0.41 0.66 16 26 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.77 7.84 -51.93 -0.41 0.37 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 267.91 15.07 4.04 4.04 Total: -1.00 -33.72 267.91 -8.10 -41.82 By element: Atomic # 1 Polarization: 2.47 SS G_CDS: -4.97 Total: -2.50 kcal Atomic # 6 Polarization: -33.15 SS G_CDS: -0.91 Total: -34.06 kcal Atomic # 7 Polarization: -26.27 SS G_CDS: 0.74 Total: -25.54 kcal Atomic # 8 Polarization: -21.40 SS G_CDS: -0.58 Total: -21.98 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: 23.13 SS G_CDS: -1.40 Total: 21.73 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -33.72 -8.10 -41.82 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082789665.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.502 kcal (2) G-P(sol) polarization free energy of solvation -33.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds