Wall clock time and date at job start Mon Mar 30 2020 02:44:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 120.00332 * 2 1 4 4 H 1.48496 * 109.47064 * 270.00328 * 3 2 1 5 5 H 1.48509 * 109.46960 * 29.99863 * 3 2 1 6 6 H 1.48499 * 109.47376 * 150.00031 * 3 2 1 7 7 C 1.37879 * 119.99942 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00192 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99990 * 0.02562 * 7 2 1 10 10 S 1.81400 * 109.47118 * 179.97438 * 9 7 2 11 11 O 1.42095 * 109.47045 * 296.38652 * 10 9 7 12 12 C 1.81399 * 102.99964 * 179.97438 * 10 9 7 13 13 C 1.53002 * 109.47404 * 179.97438 * 12 10 9 14 14 C 1.55238 * 110.58012 * 289.87798 * 13 12 10 15 15 C 1.54894 * 102.58338 * 203.33342 * 14 13 12 16 16 C 1.54266 * 104.31305 * 37.93170 * 15 14 13 17 17 C 1.53869 * 106.60031 * 336.32486 * 16 15 14 18 18 H 0.96999 * 119.99958 * 359.97438 * 1 2 3 19 19 H 1.08997 * 109.47430 * 59.99593 * 9 7 2 20 20 H 1.09002 * 109.46937 * 299.99643 * 9 7 2 21 21 H 1.09008 * 109.47188 * 60.00033 * 12 10 9 22 22 H 1.09000 * 109.47721 * 300.00289 * 12 10 9 23 23 H 1.09006 * 110.43291 * 52.46048 * 13 12 10 24 24 H 1.08996 * 110.89448 * 85.04906 * 14 13 12 25 25 H 1.08993 * 110.76342 * 321.56571 * 14 13 12 26 26 H 1.09002 * 110.48891 * 279.18596 * 15 14 13 27 27 H 1.08998 * 110.48494 * 156.67683 * 15 14 13 28 28 H 1.09001 * 110.03084 * 95.60669 * 16 15 14 29 29 H 1.08996 * 110.03108 * 216.98559 * 16 15 14 30 30 H 1.08999 * 110.04012 * 119.28327 * 17 16 15 31 31 H 1.09006 * 110.02998 * 240.67078 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 16 2.4298 -3.8780 0.0005 11 8 3.1901 -3.8511 -1.1996 12 6 1.3515 -5.3367 0.0013 13 6 2.2083 -6.6043 0.0008 14 6 2.9223 -6.7797 -1.3665 15 6 3.2014 -8.3028 -1.4084 16 6 1.9495 -8.9377 -0.7686 17 6 1.3180 -7.8578 0.1273 18 1 -0.4850 0.8400 0.0004 19 1 0.6246 -2.5571 -0.8896 20 1 0.6241 -2.5567 0.8903 21 1 0.7220 -5.3237 -0.8885 22 1 0.7225 -5.3232 0.8915 23 1 2.9376 -6.5711 0.8102 24 1 3.8544 -6.2154 -1.3935 25 1 2.2666 -6.4844 -2.1855 26 1 4.0911 -8.5438 -0.8266 27 1 3.3169 -8.6412 -2.4381 28 1 1.2451 -9.2378 -1.5444 29 1 2.2343 -9.8020 -0.1687 30 1 0.3072 -7.6338 -0.2136 31 1 1.2958 -8.1978 1.1628 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082789665.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:24 Heat of formation + Delta-G solvation = -90.882516 kcal Electronic energy + Delta-G solvation = -12559.188887 eV Core-core repulsion = 10351.105974 eV Total energy + Delta-G solvation = -2208.082913 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.093 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.09327 -36.38759 -35.23131 -32.22173 -30.67289 -29.54018 -26.28938 -24.96938 -21.42709 -20.70728 -18.69128 -18.16220 -17.03533 -16.70087 -15.98584 -15.48411 -15.28612 -14.94925 -14.30270 -14.23698 -14.12463 -13.30488 -13.09498 -12.86343 -12.65427 -12.45905 -12.15662 -11.99285 -11.87593 -11.67014 -11.59176 -11.48599 -11.20287 -10.71179 -10.41045 -8.86934 -8.30902 -6.44740 0.97034 1.38288 1.40139 1.52266 2.18113 2.36425 3.01308 3.21886 3.69950 3.72114 3.82124 4.28603 4.51773 4.57938 4.61528 4.70688 4.80360 4.87049 4.95891 5.01668 5.09537 5.11693 5.12930 5.25247 5.34392 5.49021 5.54641 5.55293 5.94147 6.69936 7.24367 8.81989 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.077208 B = 0.006331 C = 0.006027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 362.570564 B = 4421.416119 C = 4644.463955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.009 3.991 3 Si 0.965 3.035 4 H -0.282 1.282 5 H -0.272 1.272 6 H -0.252 1.252 7 C -0.538 4.538 8 H 0.065 0.935 9 C -0.272 4.272 10 S 1.266 4.734 11 O -0.919 6.919 12 C -0.438 4.438 13 C -0.071 4.071 14 C -0.136 4.136 15 C -0.121 4.121 16 C -0.122 4.122 17 C -0.115 4.115 18 H 0.267 0.733 19 H -0.006 1.006 20 H 0.074 0.926 21 H 0.056 0.944 22 H 0.140 0.860 23 H 0.108 0.892 24 H 0.056 0.944 25 H 0.034 0.966 26 H 0.081 0.919 27 H 0.062 0.938 28 H 0.058 0.942 29 H 0.084 0.916 30 H 0.055 0.945 31 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.878 -15.211 5.326 16.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.191 4.191 3 Si 0.789 3.211 4 H -0.208 1.208 5 H -0.197 1.197 6 H -0.175 1.175 7 C -0.576 4.576 8 H 0.083 0.917 9 C -0.411 4.411 10 S 1.469 4.531 11 O -0.915 6.915 12 C -0.576 4.576 13 C -0.090 4.090 14 C -0.174 4.174 15 C -0.158 4.158 16 C -0.160 4.160 17 C -0.154 4.154 18 H 0.076 0.924 19 H 0.013 0.987 20 H 0.092 0.908 21 H 0.075 0.925 22 H 0.159 0.841 23 H 0.126 0.874 24 H 0.075 0.925 25 H 0.052 0.948 26 H 0.099 0.901 27 H 0.081 0.919 28 H 0.077 0.923 29 H 0.103 0.897 30 H 0.074 0.926 31 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 4.726 -15.078 5.306 16.668 hybrid contribution -1.562 1.237 -2.365 3.093 sum 3.164 -13.840 2.942 14.499 Atomic orbital electron populations 1.70082 1.07834 1.28178 1.50339 1.25966 0.95855 1.03403 0.93900 0.85438 0.79337 0.78011 0.78343 1.20790 1.19668 1.17523 1.20953 0.93221 0.90875 1.52579 0.91668 1.25074 1.06896 1.08420 1.00690 1.68848 0.88371 0.85091 1.10818 1.92903 1.59642 1.85477 1.53471 1.27731 1.10860 1.11890 1.07089 1.21770 0.96982 0.92351 0.97911 1.22751 0.99883 0.97625 0.97099 1.22369 0.99106 0.93308 1.01062 1.22148 0.96541 0.98388 0.98917 1.22237 0.98252 0.93570 1.01303 0.92410 0.98736 0.90836 0.92480 0.84148 0.87434 0.92527 0.94754 0.90073 0.91939 0.92325 0.89716 0.92616 0.89198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.86 13.29 21.45 0.28 -55.58 16 2 C 0.01 0.52 5.46 84.66 0.46 0.98 16 3 Si 0.97 44.22 29.54 68.60 2.03 46.25 16 4 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 5 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 6 H -0.25 -10.76 7.11 99.48 0.71 -10.05 16 7 C -0.54 -30.78 9.13 25.60 0.23 -30.55 16 8 H 0.07 3.62 7.71 -2.91 -0.02 3.59 16 9 C -0.27 -13.98 5.68 71.24 0.40 -13.58 16 10 S 1.27 49.01 13.00 -56.49 -0.73 48.28 16 11 O -0.92 -46.39 16.49 -148.98 -2.46 -48.85 16 12 C -0.44 -13.31 5.26 71.98 0.38 -12.93 16 13 C -0.07 -1.80 2.85 -9.60 -0.03 -1.83 16 14 C -0.14 -4.08 5.38 32.01 0.17 -3.91 16 15 C -0.12 -2.66 6.82 31.67 0.22 -2.44 16 16 C -0.12 -2.29 6.80 31.32 0.21 -2.08 16 17 C -0.11 -2.34 6.37 31.32 0.20 -2.14 16 18 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 19 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 20 H 0.07 3.61 8.14 -2.39 -0.02 3.59 16 21 H 0.06 1.99 8.03 -2.39 -0.02 1.97 16 22 H 0.14 3.40 8.14 -2.39 -0.02 3.38 16 23 H 0.11 2.21 8.14 -2.38 -0.02 2.19 16 24 H 0.06 1.92 7.37 -2.39 -0.02 1.91 16 25 H 0.03 1.20 7.98 -2.39 -0.02 1.18 16 26 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.05 1.22 7.84 -2.39 -0.02 1.20 16 31 H 0.09 1.40 8.14 -2.38 -0.02 1.38 16 Total: -1.00 -74.87 267.91 2.45 -72.42 By element: Atomic # 1 Polarization: 4.87 SS G_CDS: 1.08 Total: 5.95 kcal Atomic # 6 Polarization: -70.72 SS G_CDS: 2.25 Total: -68.47 kcal Atomic # 7 Polarization: -55.86 SS G_CDS: 0.28 Total: -55.58 kcal Atomic # 8 Polarization: -46.39 SS G_CDS: -2.46 Total: -48.85 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Atomic # 16 Polarization: 49.01 SS G_CDS: -0.73 Total: 48.28 kcal Total: -74.87 2.45 -72.42 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082789665.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.461 kcal (2) G-P(sol) polarization free energy of solvation -74.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds